Wall clock time and date at job start Tue Mar 31 2020 02:23:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09005 * 109.47092 * 2 1 4 4 C 1.50702 * 109.47247 * 239.99910 * 2 1 3 5 5 H 1.08006 * 119.99630 * 239.99626 * 4 2 1 6 6 C 1.37874 * 120.00144 * 59.99994 * 4 2 1 7 7 N 1.31516 * 119.99696 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 120.00030 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47049 * 60.00055 * 8 6 4 10 10 H 1.48500 * 109.46900 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.47250 * 299.99953 * 8 6 4 12 12 N 1.46901 * 109.47169 * 119.99775 * 2 1 3 13 13 C 1.46903 * 111.00137 * 274.99756 * 12 2 1 14 14 C 1.50694 * 109.47341 * 179.97438 * 13 12 2 15 15 C 1.33639 * 122.74613 * 95.02954 * 14 13 12 16 16 S 1.76199 * 107.92517 * 179.97438 * 15 14 13 17 17 C 1.70972 * 90.28298 * 359.97438 * 16 15 14 18 18 C 1.50695 * 124.92008 * 180.26713 * 17 16 15 19 19 C 1.54265 * 110.03056 * 56.85682 * 18 17 16 20 20 C 1.54893 * 104.20042 * 217.10653 * 19 18 17 21 21 C 1.54895 * 102.74545 * 37.94173 * 20 19 18 22 22 C 1.53873 * 110.03240 * 299.69595 * 18 17 16 23 23 N 1.29034 * 110.16603 * 359.97438 * 17 16 15 24 24 H 1.08996 * 109.47058 * 300.00102 * 1 2 3 25 25 H 1.08996 * 109.47316 * 60.00446 * 1 2 3 26 26 H 1.09005 * 109.47092 * 179.97438 * 1 2 3 27 27 H 0.97001 * 119.99672 * 180.02562 * 7 6 4 28 28 H 1.00898 * 111.00327 * 38.95161 * 12 2 1 29 29 H 1.09007 * 109.46921 * 60.00248 * 13 12 2 30 30 H 1.08994 * 109.47353 * 300.00432 * 13 12 2 31 31 H 1.08002 * 126.03942 * 359.95431 * 15 14 13 32 32 H 1.08998 * 110.01995 * 178.30242 * 18 17 16 33 33 H 1.08992 * 110.48861 * 335.78764 * 19 18 17 34 34 H 1.09004 * 110.48519 * 98.43060 * 19 18 17 35 35 H 1.09002 * 110.75365 * 279.63447 * 20 19 18 36 36 H 1.08998 * 110.75960 * 156.26054 * 20 19 18 37 37 H 1.08999 * 110.48569 * 203.37896 * 21 20 19 38 38 H 1.08997 * 110.59722 * 80.79287 * 21 20 19 39 39 H 1.09000 * 110.03409 * 238.56859 * 22 18 17 40 40 H 1.09004 * 110.03136 * 359.97438 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3214 -1.1205 -4.0079 9 1 1.8258 -2.5203 -4.0076 10 1 1.8260 -0.4207 -5.2204 11 1 3.8064 -1.1211 -4.0081 12 7 2.0196 -0.6924 1.1995 13 6 2.0825 0.2227 2.3469 14 6 2.5873 -0.5216 3.5560 15 6 3.8741 -0.5264 3.9168 16 16 4.0258 -1.5084 5.3719 17 6 2.3438 -1.8143 5.3509 18 6 1.6066 -2.6516 6.3641 19 6 1.8401 -2.0918 7.7825 20 6 1.9358 -3.3523 8.6775 21 6 2.7075 -4.3511 7.7796 22 6 2.1581 -4.0881 6.3623 23 7 1.7959 -1.2195 4.3454 24 1 -0.3633 0.5138 0.8899 25 1 -0.3634 0.5137 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 0.7081 1.1607 -3.4844 28 1 1.4495 -1.4978 1.4102 29 1 1.0870 0.6164 2.5526 30 1 2.7588 1.0463 2.1182 31 1 4.6790 -0.0183 3.4064 32 1 0.5408 -2.6605 6.1362 33 1 2.7705 -1.5253 7.8207 34 1 1.0001 -1.4687 8.0898 35 1 0.9427 -3.7339 8.9148 36 1 2.4963 -3.1383 9.5876 37 1 2.5005 -5.3769 8.0847 38 1 3.7784 -4.1518 7.8167 39 1 1.3598 -4.7943 6.1343 40 1 2.9587 -4.1797 5.6282 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602861773.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:23:44 Heat of formation + Delta-G solvation = 25.211021 kcal Electronic energy + Delta-G solvation = -19193.563486 eV Core-core repulsion = 16327.053858 eV Total energy + Delta-G solvation = -2866.509628 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 280.130 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -39.89968 -38.17856 -35.81862 -32.74295 -31.29038 -29.05374 -28.99134 -27.93110 -25.32196 -24.91078 -23.16241 -21.00992 -20.26779 -20.14475 -19.52582 -17.42522 -16.28046 -16.16664 -15.54288 -14.91102 -14.79187 -14.33024 -14.04019 -13.68613 -13.42542 -13.12609 -12.82064 -12.56795 -11.83616 -11.78171 -11.53622 -11.40602 -11.38966 -11.34596 -11.28008 -10.96072 -10.87330 -10.82739 -10.69255 -10.49332 -10.10632 -9.88801 -9.47982 -9.21772 -9.00100 -8.50957 -8.33518 -7.21878 -5.95935 -3.99229 0.89007 1.50746 1.90028 3.00296 3.36488 3.39961 3.43795 3.99841 4.31042 4.36234 4.46859 4.68126 5.12958 5.15469 5.23808 5.29426 5.35431 5.37787 5.38868 5.45161 5.59261 5.60856 5.62979 5.67220 5.80510 5.92262 6.02260 6.05592 6.08833 6.27969 6.45273 6.74112 6.89814 7.13034 7.37107 7.77451 7.90360 7.97700 8.28783 8.55123 8.62680 9.07487 9.65812 11.11108 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.031857 B = 0.003274 C = 0.003263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 878.713907 B = 8550.184452 C = 8579.563694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.212 3.788 3 H 0.034 0.966 4 C -0.495 4.495 5 H 0.062 0.938 6 C 0.055 3.945 7 N -0.898 5.898 8 Si 0.899 3.101 9 H -0.278 1.278 10 H -0.289 1.289 11 H -0.277 1.277 12 N -0.678 5.678 13 C 0.131 3.869 14 C 0.083 3.917 15 C -0.240 4.240 16 S 0.092 5.908 17 C 0.056 3.944 18 C -0.016 4.016 19 C -0.119 4.119 20 C -0.123 4.123 21 C -0.125 4.125 22 C -0.120 4.120 23 N -0.465 5.465 24 H 0.006 0.994 25 H 0.089 0.911 26 H 0.028 0.972 27 H 0.260 0.740 28 H 0.330 0.670 29 H 0.038 0.962 30 H 0.080 0.920 31 H 0.177 0.823 32 H 0.101 0.899 33 H 0.070 0.930 34 H 0.073 0.927 35 H 0.070 0.930 36 H 0.069 0.931 37 H 0.068 0.932 38 H 0.067 0.933 39 H 0.074 0.926 40 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.676 -6.411 22.211 23.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.105 3.895 3 H 0.052 0.948 4 C -0.534 4.534 5 H 0.080 0.920 6 C -0.145 4.145 7 N -0.538 5.538 8 Si 0.727 3.273 9 H -0.204 1.204 10 H -0.215 1.215 11 H -0.203 1.203 12 N -0.308 5.308 13 C -0.001 4.001 14 C -0.048 4.048 15 C -0.379 4.379 16 S 0.346 5.654 17 C -0.223 4.223 18 C -0.039 4.039 19 C -0.157 4.157 20 C -0.161 4.161 21 C -0.163 4.163 22 C -0.159 4.159 23 N -0.179 5.179 24 H 0.025 0.975 25 H 0.108 0.892 26 H 0.047 0.953 27 H 0.070 0.930 28 H 0.146 0.854 29 H 0.056 0.944 30 H 0.099 0.901 31 H 0.194 0.806 32 H 0.119 0.881 33 H 0.089 0.911 34 H 0.092 0.908 35 H 0.089 0.911 36 H 0.088 0.912 37 H 0.087 0.913 38 H 0.086 0.914 39 H 0.093 0.907 40 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 4.529 -6.528 22.430 23.795 hybrid contribution -0.967 0.205 -1.581 1.864 sum 3.562 -6.323 20.849 22.076 Atomic orbital electron populations 1.22425 1.00578 0.99303 1.00514 1.19192 0.89732 0.94407 0.86212 0.94784 1.21112 1.30266 1.12447 0.89564 0.92021 1.24946 0.95345 0.95220 0.99006 1.69878 1.37246 1.23218 1.23435 0.86555 0.79153 0.79620 0.82007 1.20377 1.21454 1.20294 1.60901 1.58305 1.08931 1.02636 1.20452 0.99074 0.94223 0.86349 1.20447 0.88953 0.98069 0.97321 1.26831 1.01429 1.08469 1.01195 1.83660 1.10212 1.46198 1.25339 1.26982 0.94383 1.02232 0.98729 1.20456 0.99898 0.92521 0.90985 1.22552 1.02476 0.97903 0.92806 1.22500 1.00656 0.95090 0.97844 1.22388 1.00010 0.99431 0.94440 1.22308 1.01132 0.94676 0.97767 1.66116 1.38494 1.09427 1.03893 0.97504 0.89227 0.95325 0.93015 0.85384 0.94445 0.90134 0.80565 0.88094 0.91094 0.90830 0.91138 0.91233 0.91321 0.91414 0.90721 0.91154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.21 8.94 37.16 0.33 -3.88 16 2 C 0.21 5.47 2.57 -68.87 -0.18 5.29 16 3 H 0.03 0.95 7.80 -51.93 -0.40 0.54 16 4 C -0.50 -14.00 8.84 -34.44 -0.30 -14.31 16 5 H 0.06 1.76 7.81 -52.48 -0.41 1.35 16 6 C 0.06 1.56 5.30 -17.82 -0.09 1.46 16 7 N -0.90 -26.03 11.32 55.43 0.63 -25.40 16 8 Si 0.90 21.82 29.54 -169.99 -5.02 16.80 16 9 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 10 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 11 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 12 N -0.68 -15.22 6.22 -109.22 -0.68 -15.90 16 13 C 0.13 2.54 5.92 -4.98 -0.03 2.51 16 14 C 0.08 1.44 6.25 -84.23 -0.53 0.91 16 15 C -0.24 -3.60 11.11 29.12 0.32 -3.28 16 16 S 0.09 1.13 22.04 -107.50 -2.37 -1.24 16 17 C 0.06 0.76 5.86 -13.46 -0.08 0.68 16 18 C -0.02 -0.17 3.40 -90.66 -0.31 -0.48 16 19 C -0.12 -1.00 6.32 -25.07 -0.16 -1.16 16 20 C -0.12 -0.83 6.91 -24.73 -0.17 -1.00 16 21 C -0.13 -0.89 6.83 -25.07 -0.17 -1.06 16 22 C -0.12 -1.09 6.37 -25.61 -0.16 -1.26 16 23 N -0.47 -7.88 10.53 -8.06 -0.08 -7.96 16 24 H 0.01 0.14 7.45 -51.93 -0.39 -0.25 16 25 H 0.09 2.44 6.07 -51.93 -0.32 2.13 16 26 H 0.03 0.69 8.13 -51.93 -0.42 0.27 16 27 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 28 H 0.33 7.42 8.46 -39.29 -0.33 7.09 16 29 H 0.04 0.74 7.44 -51.92 -0.39 0.36 16 30 H 0.08 1.50 8.01 -51.93 -0.42 1.08 16 31 H 0.18 2.37 8.06 -52.49 -0.42 1.95 16 32 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 33 H 0.07 0.62 7.16 -51.93 -0.37 0.25 16 34 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 39 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.07 0.72 7.44 -51.93 -0.39 0.33 16 LS Contribution 334.74 15.07 5.04 5.04 Total: -1.00 -29.90 334.74 -10.36 -40.25 By element: Atomic # 1 Polarization: 10.32 SS G_CDS: -6.35 Total: 3.97 kcal Atomic # 6 Polarization: -14.05 SS G_CDS: -1.53 Total: -15.57 kcal Atomic # 7 Polarization: -49.12 SS G_CDS: -0.14 Total: -49.26 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Atomic # 16 Polarization: 1.13 SS G_CDS: -2.37 Total: -1.24 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -29.90 -10.36 -40.25 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602861773.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.465 kcal (2) G-P(sol) polarization free energy of solvation -29.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.254 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds