Wall clock time and date at job start Tue Mar 31 2020 02:25:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09007 * 109.47002 * 2 1 4 4 C 1.50695 * 109.47206 * 239.99820 * 2 1 3 5 5 H 1.07999 * 119.99928 * 245.62848 * 4 2 1 6 6 C 1.37875 * 120.00048 * 65.63108 * 4 2 1 7 7 N 1.31520 * 119.99613 * 197.14809 * 6 4 2 8 8 Si 1.86797 * 120.00328 * 17.42222 * 6 4 2 9 9 H 1.48497 * 109.47527 * 179.72605 * 8 6 4 10 10 H 1.48494 * 109.47062 * 299.72984 * 8 6 4 11 11 H 1.48502 * 109.46663 * 59.72455 * 8 6 4 12 12 N 1.46903 * 109.47099 * 119.99286 * 2 1 3 13 13 C 1.46901 * 111.00062 * 275.00162 * 12 2 1 14 14 C 1.50704 * 109.46926 * 180.02562 * 13 12 2 15 15 O 1.21283 * 119.99947 * 359.97438 * 14 13 12 16 16 N 1.34771 * 119.99629 * 180.02562 * 14 13 12 17 17 C 1.46505 * 119.99565 * 179.97438 * 16 14 13 18 18 C 1.50707 * 109.46878 * 179.97438 * 17 16 14 19 19 C 1.38220 * 120.01062 * 105.00252 * 18 17 16 20 20 C 1.38224 * 120.02378 * 179.97438 * 19 18 17 21 21 C 1.38270 * 120.04829 * 0.02562 * 20 19 18 22 22 C 1.38168 * 120.03034 * 359.97438 * 21 20 19 23 23 C 1.38432 * 120.01279 * 284.72157 * 18 17 16 24 24 F 1.35105 * 120.02476 * 0.02562 * 23 18 17 25 25 H 1.08995 * 109.47103 * 306.36950 * 1 2 3 26 26 H 1.08994 * 109.47447 * 66.37792 * 1 2 3 27 27 H 1.09003 * 109.46645 * 186.37047 * 1 2 3 28 28 H 0.96992 * 120.00292 * 355.20107 * 7 6 4 29 29 H 1.00899 * 110.99424 * 151.04940 * 12 2 1 30 30 H 1.08998 * 109.47341 * 300.00360 * 13 12 2 31 31 H 1.09000 * 109.46876 * 60.00301 * 13 12 2 32 32 H 0.96994 * 120.00747 * 0.02562 * 16 14 13 33 33 H 1.08998 * 109.47418 * 300.00133 * 17 16 14 34 34 H 1.09000 * 109.47148 * 60.00288 * 17 16 14 35 35 H 1.07998 * 119.98751 * 0.02562 * 19 18 17 36 36 H 1.08003 * 119.97387 * 179.97438 * 20 19 18 37 37 H 1.08004 * 119.98291 * 179.97438 * 21 20 19 38 38 H 1.07998 * 120.01303 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.5762 -1.6385 -1.1339 6 6 1.7976 -0.1756 -2.4793 7 7 1.9232 -0.9278 -3.5509 8 14 1.3088 1.6192 -2.6501 9 1 1.1221 1.9469 -4.0864 10 1 0.0388 1.8580 -1.9187 11 1 2.3771 2.4794 -2.0809 12 7 2.0197 -0.6924 1.1995 13 6 2.0824 0.2229 2.3469 14 6 2.5885 -0.5212 3.5558 15 8 2.8688 -1.6981 3.4701 16 7 2.7286 0.1210 4.7324 17 6 3.2200 -0.6024 5.9077 18 6 3.2845 0.3365 7.0848 19 6 2.3338 0.2576 8.0850 20 6 2.3930 1.1183 9.1650 21 6 3.4028 2.0594 9.2457 22 6 4.3542 2.1402 8.2471 23 6 4.2993 1.2745 7.1675 24 9 5.2320 1.3491 6.1930 25 1 -0.3633 0.6094 0.8274 26 1 -0.3634 0.4118 -0.9415 27 1 -0.3633 -1.0214 0.1140 28 1 2.2478 -1.8381 -3.4691 29 1 2.9173 -1.1203 1.0288 30 1 2.7587 1.0465 2.1182 31 1 1.0870 0.6165 2.5525 32 1 2.5034 1.0620 4.8012 33 1 2.5439 -1.4262 6.1363 34 1 4.2156 -0.9957 5.7023 35 1 1.5450 -0.4774 8.0231 36 1 1.6495 1.0562 9.9458 37 1 3.4478 2.7317 10.0898 38 1 5.1426 2.8756 8.3102 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602863215.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:25:30 Heat of formation + Delta-G solvation = -56.899972 kcal Electronic energy + Delta-G solvation = -20895.914152 eV Core-core repulsion = 17459.630748 eV Total energy + Delta-G solvation = -3436.283404 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.133 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -49.22097 -39.86481 -39.06263 -35.91006 -34.94425 -32.52848 -31.84234 -30.91844 -29.76232 -27.05097 -25.23269 -24.08042 -23.23301 -21.89859 -20.39292 -19.63655 -18.09039 -17.69509 -16.85319 -16.83325 -16.32341 -15.87973 -15.61657 -15.39174 -14.60395 -14.47913 -14.09846 -13.80325 -13.53862 -13.42562 -13.22622 -12.79630 -12.68938 -12.44615 -12.06035 -11.85589 -11.75175 -11.42689 -11.25274 -10.96725 -10.40378 -9.98262 -9.80253 -9.68705 -9.37334 -9.13793 -9.03633 -8.87796 -8.22109 -7.52259 -6.45431 -4.06085 0.62085 0.73654 2.89333 2.97142 3.37921 3.40850 3.43143 3.59798 3.83568 4.14753 4.29473 4.48372 4.49899 4.74823 4.85498 5.02269 5.19072 5.21749 5.29148 5.34894 5.54656 5.60313 5.69119 5.72873 5.76000 5.88258 5.93227 6.36399 6.41505 6.42553 6.67868 6.77647 6.89595 7.46992 7.49975 7.74173 8.11975 8.38840 8.41842 8.51092 8.97541 9.63096 10.95010 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.031593 B = 0.003065 C = 0.003015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 886.070767 B = 9133.636226 C = 9283.494400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.189 3.811 3 H -0.006 1.006 4 C -0.605 4.605 5 H 0.062 0.938 6 C 0.031 3.969 7 N -0.905 5.905 8 Si 1.048 2.952 9 H -0.285 1.285 10 H -0.273 1.273 11 H -0.285 1.285 12 N -0.664 5.664 13 C 0.041 3.959 14 C 0.515 3.485 15 O -0.522 6.522 16 N -0.736 5.736 17 C 0.164 3.836 18 C -0.140 4.140 19 C -0.072 4.072 20 C -0.133 4.133 21 C -0.086 4.086 22 C -0.157 4.157 23 C 0.114 3.886 24 F -0.132 7.132 25 H 0.017 0.983 26 H 0.053 0.947 27 H 0.051 0.949 28 H 0.269 0.731 29 H 0.347 0.653 30 H 0.051 0.949 31 H 0.094 0.906 32 H 0.399 0.601 33 H 0.080 0.920 34 H 0.077 0.923 35 H 0.136 0.864 36 H 0.132 0.868 37 H 0.133 0.867 38 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.637 8.835 27.837 29.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.081 3.919 3 H 0.011 0.989 4 C -0.643 4.643 5 H 0.080 0.920 6 C -0.174 4.174 7 N -0.539 5.539 8 Si 0.877 3.123 9 H -0.211 1.211 10 H -0.200 1.200 11 H -0.212 1.212 12 N -0.297 5.297 13 C -0.092 4.092 14 C 0.301 3.699 15 O -0.396 6.396 16 N -0.390 5.390 17 C 0.040 3.960 18 C -0.141 4.141 19 C -0.091 4.091 20 C -0.151 4.151 21 C -0.104 4.104 22 C -0.176 4.176 23 C 0.095 3.905 24 F -0.110 7.110 25 H 0.036 0.964 26 H 0.072 0.928 27 H 0.070 0.930 28 H 0.079 0.921 29 H 0.166 0.834 30 H 0.068 0.932 31 H 0.112 0.888 32 H 0.233 0.767 33 H 0.099 0.901 34 H 0.095 0.905 35 H 0.154 0.846 36 H 0.149 0.851 37 H 0.151 0.849 38 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 0.818 8.828 26.743 28.174 hybrid contribution 1.352 -0.118 0.908 1.633 sum 2.169 8.710 27.650 29.071 Atomic orbital electron populations 1.22148 0.98213 1.00483 0.98793 1.19466 0.92233 0.92284 0.87965 0.98853 1.22090 1.40785 1.10343 0.91101 0.92013 1.25740 0.94654 1.05051 0.92001 1.70840 1.41580 1.10024 1.31414 0.83997 0.77028 0.75243 0.76056 1.21081 1.19979 1.21202 1.60370 1.34041 1.31175 1.04150 1.21862 1.01302 0.95061 0.91010 1.21017 0.77067 0.87836 0.83943 1.90695 1.48559 1.15906 1.84419 1.46061 1.69379 1.14126 1.09452 1.20024 1.01157 0.92866 0.81919 1.20043 0.96404 0.98853 0.98795 1.21066 0.97076 0.98426 0.92525 1.21253 0.99138 0.96033 0.98651 1.21089 0.93557 0.97859 0.97927 1.21204 1.01694 1.00461 0.94241 1.17651 0.88234 0.97302 0.87348 1.91552 1.63247 1.95417 1.60791 0.96435 0.92794 0.92952 0.92120 0.83382 0.93165 0.88823 0.76748 0.90134 0.90459 0.84614 0.85052 0.84890 0.84539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.16 9.05 37.16 0.34 -2.83 16 2 C 0.19 4.61 2.18 -68.87 -0.15 4.46 16 3 H -0.01 -0.14 6.46 -51.92 -0.34 -0.48 16 4 C -0.61 -17.40 8.83 -34.44 -0.30 -17.70 16 5 H 0.06 1.93 7.92 -52.49 -0.42 1.52 16 6 C 0.03 0.91 5.29 -17.82 -0.09 0.81 16 7 N -0.90 -28.12 13.70 55.43 0.76 -27.37 16 8 Si 1.05 25.20 26.29 -169.99 -4.47 20.73 16 9 H -0.28 -6.89 7.11 56.52 0.40 -6.48 16 10 H -0.27 -6.05 5.76 56.52 0.33 -5.72 16 11 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 12 N -0.66 -14.80 5.93 -109.22 -0.65 -15.45 16 13 C 0.04 0.70 5.97 -4.97 -0.03 0.67 16 14 C 0.51 8.55 7.87 -10.99 -0.09 8.46 16 15 O -0.52 -10.78 16.20 5.55 0.09 -10.69 16 16 N -0.74 -9.08 5.55 -61.47 -0.34 -9.42 16 17 C 0.16 1.83 5.49 -5.19 -0.03 1.80 16 18 C -0.14 -1.26 5.25 -104.55 -0.55 -1.81 16 19 C -0.07 -0.51 9.67 -39.59 -0.38 -0.89 16 20 C -0.13 -0.76 10.04 -39.57 -0.40 -1.16 16 21 C -0.09 -0.49 10.04 -39.60 -0.40 -0.89 16 22 C -0.16 -1.13 10.03 -39.52 -0.40 -1.53 16 23 C 0.11 1.07 7.25 -39.42 -0.29 0.79 16 24 F -0.13 -1.50 16.75 2.25 0.04 -1.47 16 25 H 0.02 0.33 7.62 -51.93 -0.40 -0.06 16 26 H 0.05 1.26 4.88 -51.93 -0.25 1.01 16 27 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 28 H 0.27 8.37 8.73 -40.82 -0.36 8.01 16 29 H 0.35 8.17 7.96 -39.29 -0.31 7.85 16 30 H 0.05 0.81 8.05 -51.93 -0.42 0.39 16 31 H 0.09 1.46 7.56 -51.93 -0.39 1.07 16 32 H 0.40 4.01 8.46 -40.82 -0.35 3.67 16 33 H 0.08 0.88 7.95 -51.93 -0.41 0.47 16 34 H 0.08 0.97 8.07 -51.93 -0.42 0.55 16 35 H 0.14 0.77 8.00 -52.49 -0.42 0.35 16 36 H 0.13 0.46 8.06 -52.48 -0.42 0.04 16 37 H 0.13 0.43 8.06 -52.48 -0.42 0.00 16 38 H 0.14 0.77 8.06 -52.49 -0.42 0.35 16 LS Contribution 325.32 15.07 4.90 4.90 Total: -1.00 -33.88 325.32 -7.47 -41.35 By element: Atomic # 1 Polarization: 12.24 SS G_CDS: -5.04 Total: 7.20 kcal Atomic # 6 Polarization: -7.03 SS G_CDS: -2.77 Total: -9.80 kcal Atomic # 7 Polarization: -52.01 SS G_CDS: -0.23 Total: -52.24 kcal Atomic # 8 Polarization: -10.78 SS G_CDS: 0.09 Total: -10.69 kcal Atomic # 9 Polarization: -1.50 SS G_CDS: 0.04 Total: -1.47 kcal Atomic # 14 Polarization: 25.20 SS G_CDS: -4.47 Total: 20.73 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -33.88 -7.47 -41.35 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602863215.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.545 kcal (2) G-P(sol) polarization free energy of solvation -33.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds