Wall clock time and date at job start Tue Mar 31 2020 02:25:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09007 * 109.47002 * 2 1 4 4 C 1.50695 * 109.47206 * 239.99820 * 2 1 3 5 5 H 1.07999 * 119.99928 * 245.62848 * 4 2 1 6 6 C 1.37875 * 120.00048 * 65.63108 * 4 2 1 7 7 N 1.31520 * 119.99613 * 197.14809 * 6 4 2 8 8 Si 1.86797 * 120.00328 * 17.42222 * 6 4 2 9 9 H 1.48497 * 109.47527 * 179.72605 * 8 6 4 10 10 H 1.48494 * 109.47062 * 299.72984 * 8 6 4 11 11 H 1.48502 * 109.46663 * 59.72455 * 8 6 4 12 12 N 1.46903 * 109.47099 * 119.99286 * 2 1 3 13 13 C 1.46901 * 111.00062 * 275.00162 * 12 2 1 14 14 C 1.50704 * 109.46926 * 180.02562 * 13 12 2 15 15 O 1.21283 * 119.99947 * 359.97438 * 14 13 12 16 16 N 1.34771 * 119.99629 * 180.02562 * 14 13 12 17 17 C 1.46505 * 119.99565 * 179.97438 * 16 14 13 18 18 C 1.50707 * 109.46878 * 179.97438 * 17 16 14 19 19 C 1.38220 * 120.01062 * 105.00252 * 18 17 16 20 20 C 1.38224 * 120.02378 * 179.97438 * 19 18 17 21 21 C 1.38270 * 120.04829 * 0.02562 * 20 19 18 22 22 C 1.38168 * 120.03034 * 359.97438 * 21 20 19 23 23 C 1.38432 * 120.01279 * 284.72157 * 18 17 16 24 24 F 1.35105 * 120.02476 * 0.02562 * 23 18 17 25 25 H 1.08995 * 109.47103 * 306.36950 * 1 2 3 26 26 H 1.08994 * 109.47447 * 66.37792 * 1 2 3 27 27 H 1.09003 * 109.46645 * 186.37047 * 1 2 3 28 28 H 0.96992 * 120.00292 * 355.20107 * 7 6 4 29 29 H 1.00899 * 110.99424 * 151.04940 * 12 2 1 30 30 H 1.08998 * 109.47341 * 300.00360 * 13 12 2 31 31 H 1.09000 * 109.46876 * 60.00301 * 13 12 2 32 32 H 0.96994 * 120.00747 * 0.02562 * 16 14 13 33 33 H 1.08998 * 109.47418 * 300.00133 * 17 16 14 34 34 H 1.09000 * 109.47148 * 60.00288 * 17 16 14 35 35 H 1.07998 * 119.98751 * 0.02562 * 19 18 17 36 36 H 1.08003 * 119.97387 * 179.97438 * 20 19 18 37 37 H 1.08004 * 119.98291 * 179.97438 * 21 20 19 38 38 H 1.07998 * 120.01303 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.5762 -1.6385 -1.1339 6 6 1.7976 -0.1756 -2.4793 7 7 1.9232 -0.9278 -3.5509 8 14 1.3088 1.6192 -2.6501 9 1 1.1221 1.9469 -4.0864 10 1 0.0388 1.8580 -1.9187 11 1 2.3771 2.4794 -2.0809 12 7 2.0197 -0.6924 1.1995 13 6 2.0824 0.2229 2.3469 14 6 2.5885 -0.5212 3.5558 15 8 2.8688 -1.6981 3.4701 16 7 2.7286 0.1210 4.7324 17 6 3.2200 -0.6024 5.9077 18 6 3.2845 0.3365 7.0848 19 6 2.3338 0.2576 8.0850 20 6 2.3930 1.1183 9.1650 21 6 3.4028 2.0594 9.2457 22 6 4.3542 2.1402 8.2471 23 6 4.2993 1.2745 7.1675 24 9 5.2320 1.3491 6.1930 25 1 -0.3633 0.6094 0.8274 26 1 -0.3634 0.4118 -0.9415 27 1 -0.3633 -1.0214 0.1140 28 1 2.2478 -1.8381 -3.4691 29 1 2.9173 -1.1203 1.0288 30 1 2.7587 1.0465 2.1182 31 1 1.0870 0.6165 2.5525 32 1 2.5034 1.0620 4.8012 33 1 2.5439 -1.4262 6.1363 34 1 4.2156 -0.9957 5.7023 35 1 1.5450 -0.4774 8.0231 36 1 1.6495 1.0562 9.9458 37 1 3.4478 2.7317 10.0898 38 1 5.1426 2.8756 8.3102 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602863215.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:25:30 Heat of formation + Delta-G solvation = -82.384621 kcal Electronic energy + Delta-G solvation = -20897.019249 eV Core-core repulsion = 17459.630748 eV Total energy + Delta-G solvation = -3437.388501 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.133 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -49.96626 -40.92259 -39.89669 -37.65231 -36.06287 -34.59342 -32.73201 -31.59266 -31.33468 -28.21548 -26.90368 -25.72321 -23.78116 -22.57247 -21.75053 -21.46212 -19.79499 -18.69855 -18.10456 -17.53540 -17.39603 -16.93619 -16.60806 -16.35194 -16.12764 -15.66681 -15.25598 -15.12392 -14.87130 -14.39456 -14.22216 -14.08104 -13.90654 -13.83534 -13.32718 -13.23052 -13.05839 -12.81703 -12.55954 -12.27700 -11.99370 -11.87915 -11.55359 -11.05073 -10.99842 -10.42378 -10.24137 -10.00993 -9.69805 -9.25041 -8.76825 -6.40085 0.04790 0.21432 1.46840 1.54982 1.58095 1.74078 2.07785 2.49853 2.67994 3.04882 3.24909 3.43777 3.52264 3.73021 3.85403 4.03913 4.25314 4.35089 4.35855 4.39984 4.52603 4.55651 4.59964 4.86015 4.88038 4.92397 5.07250 5.08074 5.17508 5.27937 5.36887 5.44378 5.59290 5.74961 5.90044 5.99503 6.21056 6.38460 6.63700 6.68809 7.19546 7.40234 8.60779 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.031593 B = 0.003065 C = 0.003015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 886.070767 B = 9133.636226 C = 9283.494400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.191 3.809 3 H 0.009 0.991 4 C -0.613 4.613 5 H 0.014 0.986 6 C -0.021 4.021 7 N -0.937 5.937 8 Si 1.090 2.910 9 H -0.290 1.290 10 H -0.235 1.235 11 H -0.263 1.263 12 N -0.680 5.680 13 C 0.040 3.960 14 C 0.517 3.483 15 O -0.572 6.572 16 N -0.714 5.714 17 C 0.165 3.835 18 C -0.150 4.150 19 C -0.075 4.075 20 C -0.126 4.126 21 C -0.079 4.079 22 C -0.161 4.161 23 C 0.088 3.912 24 F -0.152 7.152 25 H 0.058 0.942 26 H 0.049 0.951 27 H 0.034 0.966 28 H 0.250 0.750 29 H 0.333 0.667 30 H 0.070 0.930 31 H 0.120 0.880 32 H 0.413 0.587 33 H 0.082 0.918 34 H 0.057 0.943 35 H 0.149 0.851 36 H 0.161 0.839 37 H 0.164 0.836 38 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.089 12.072 31.023 33.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.082 3.918 3 H 0.027 0.973 4 C -0.651 4.651 5 H 0.033 0.967 6 C -0.219 4.219 7 N -0.572 5.572 8 Si 0.909 3.091 9 H -0.216 1.216 10 H -0.159 1.159 11 H -0.188 1.188 12 N -0.312 5.312 13 C -0.092 4.092 14 C 0.304 3.696 15 O -0.450 6.450 16 N -0.368 5.368 17 C 0.042 3.958 18 C -0.152 4.152 19 C -0.094 4.094 20 C -0.144 4.144 21 C -0.097 4.097 22 C -0.179 4.179 23 C 0.068 3.932 24 F -0.131 7.131 25 H 0.077 0.923 26 H 0.068 0.932 27 H 0.053 0.947 28 H 0.059 0.941 29 H 0.150 0.850 30 H 0.088 0.912 31 H 0.138 0.862 32 H 0.249 0.751 33 H 0.100 0.900 34 H 0.075 0.925 35 H 0.166 0.834 36 H 0.178 0.822 37 H 0.182 0.818 38 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -0.737 12.092 30.000 32.354 hybrid contribution 1.887 -1.177 0.078 2.225 sum 1.150 10.915 30.079 32.019 Atomic orbital electron populations 1.22049 0.96611 1.00321 1.00238 1.19361 0.93335 0.92246 0.86823 0.97316 1.22342 1.40096 1.08888 0.93800 0.96726 1.27382 0.94038 1.08995 0.91511 1.70985 1.44096 1.09498 1.32663 0.83533 0.79156 0.69842 0.76520 1.21578 1.15945 1.18798 1.60291 1.33394 1.32612 1.04881 1.21975 1.03384 0.94522 0.89343 1.20935 0.76680 0.87133 0.84877 1.90683 1.51073 1.17971 1.85243 1.45874 1.67600 1.14680 1.08627 1.20010 0.99932 0.93573 0.82285 1.19867 0.97618 0.98987 0.98685 1.21282 0.96763 0.98984 0.92336 1.21628 0.99399 0.94890 0.98465 1.21500 0.92427 0.97773 0.97972 1.21450 1.02516 1.00155 0.93816 1.17973 0.88476 0.98702 0.88045 1.91497 1.64102 1.95675 1.61787 0.92290 0.93241 0.94687 0.94119 0.84983 0.91191 0.86189 0.75073 0.89977 0.92513 0.83355 0.82186 0.81836 0.83322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.79 9.05 71.98 0.65 -5.14 16 2 C 0.19 9.10 2.18 44.17 0.10 9.20 16 3 H 0.01 0.42 6.46 -2.38 -0.02 0.40 16 4 C -0.61 -36.14 8.83 25.60 0.23 -35.92 16 5 H 0.01 0.96 7.92 -2.91 -0.02 0.94 16 6 C -0.02 -1.26 5.29 84.65 0.45 -0.81 16 7 N -0.94 -60.18 13.70 21.45 0.29 -59.89 16 8 Si 1.09 49.16 26.29 68.60 1.80 50.97 16 9 H -0.29 -13.26 7.11 99.48 0.71 -12.55 16 10 H -0.24 -9.19 5.76 99.48 0.57 -8.62 16 11 H -0.26 -10.87 7.11 99.48 0.71 -10.17 16 12 N -0.68 -30.12 5.93 -499.45 -2.96 -33.08 16 13 C 0.04 1.30 5.97 85.56 0.51 1.81 16 14 C 0.52 16.86 7.87 87.66 0.69 17.55 16 15 O -0.57 -24.17 16.20 -3.04 -0.05 -24.21 16 16 N -0.71 -16.87 5.55 -466.77 -2.59 -19.46 16 17 C 0.17 3.66 5.49 85.63 0.47 4.13 16 18 C -0.15 -2.52 5.25 -19.82 -0.10 -2.63 16 19 C -0.08 -0.87 9.67 22.26 0.22 -0.65 16 20 C -0.13 -0.96 10.04 22.27 0.22 -0.73 16 21 C -0.08 -0.60 10.04 22.26 0.22 -0.37 16 22 C -0.16 -1.95 10.03 22.31 0.22 -1.73 16 23 C 0.09 1.56 7.25 22.38 0.16 1.72 16 24 F -0.15 -3.49 16.75 44.97 0.75 -2.74 16 25 H 0.06 2.04 7.62 -2.39 -0.02 2.02 16 26 H 0.05 2.16 4.88 -2.39 -0.01 2.14 16 27 H 0.03 1.59 8.14 -2.39 -0.02 1.57 16 28 H 0.25 16.47 8.73 -92.71 -0.81 15.67 16 29 H 0.33 16.20 7.96 -89.69 -0.71 15.48 16 30 H 0.07 2.05 8.05 -2.39 -0.02 2.03 16 31 H 0.12 3.27 7.56 -2.39 -0.02 3.25 16 32 H 0.41 7.46 8.46 -92.71 -0.78 6.68 16 33 H 0.08 1.79 7.95 -2.39 -0.02 1.77 16 34 H 0.06 1.49 8.07 -2.39 -0.02 1.47 16 35 H 0.15 1.28 8.00 -2.91 -0.02 1.26 16 36 H 0.16 0.32 8.06 -2.91 -0.02 0.30 16 37 H 0.16 0.24 8.06 -2.91 -0.02 0.22 16 38 H 0.15 1.35 8.06 -2.91 -0.02 1.33 16 Total: -1.00 -77.50 325.32 0.71 -76.79 By element: Atomic # 1 Polarization: 25.77 SS G_CDS: -0.58 Total: 25.20 kcal Atomic # 6 Polarization: -17.61 SS G_CDS: 4.04 Total: -13.58 kcal Atomic # 7 Polarization: -107.17 SS G_CDS: -5.26 Total: -112.43 kcal Atomic # 8 Polarization: -24.17 SS G_CDS: -0.05 Total: -24.21 kcal Atomic # 9 Polarization: -3.49 SS G_CDS: 0.75 Total: -2.74 kcal Atomic # 14 Polarization: 49.16 SS G_CDS: 1.80 Total: 50.97 kcal Total: -77.50 0.71 -76.79 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602863215.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.593 kcal (2) G-P(sol) polarization free energy of solvation -77.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds