Wall clock time and date at job start Tue Mar 31 2020 02:25:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46949 * 2 1 4 4 C 1.50694 * 109.47174 * 120.00530 * 2 1 3 5 5 H 1.08000 * 120.00563 * 119.99919 * 4 2 1 6 6 C 1.37885 * 119.99902 * 300.00082 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46903 * 109.47120 * 240.00492 * 2 1 3 13 13 C 1.46906 * 110.99973 * 84.99803 * 12 2 1 14 14 C 1.50699 * 109.47093 * 179.97438 * 13 12 2 15 15 O 1.21284 * 119.99801 * 0.02562 * 14 13 12 16 16 N 1.34772 * 120.00293 * 180.02562 * 14 13 12 17 17 C 1.46500 * 120.00224 * 180.02562 * 16 14 13 18 18 C 1.50700 * 109.46798 * 179.97438 * 17 16 14 19 19 C 1.38246 * 119.97347 * 269.72499 * 18 17 16 20 20 C 1.38194 * 120.02506 * 179.72999 * 19 18 17 21 21 C 1.38459 * 119.97352 * 0.56934 * 20 19 18 22 22 F 1.35100 * 120.02950 * 179.68443 * 21 20 19 23 23 C 1.38460 * 119.94872 * 359.70445 * 21 20 19 24 24 C 1.38199 * 119.97100 * 359.97438 * 23 21 20 25 25 H 1.09007 * 109.47356 * 59.99532 * 1 2 3 26 26 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47359 * 300.00009 * 1 2 3 28 28 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 29 29 H 1.00894 * 111.00044 * 208.95721 * 12 2 1 30 30 H 1.08993 * 109.47070 * 299.99958 * 13 12 2 31 31 H 1.08998 * 109.46583 * 59.99950 * 13 12 2 32 32 H 0.97005 * 119.99290 * 359.97438 * 16 14 13 33 33 H 1.09001 * 109.47138 * 299.99921 * 17 16 14 34 34 H 1.09004 * 109.46798 * 60.00147 * 17 16 14 35 35 H 1.08003 * 119.98740 * 359.97438 * 19 18 17 36 36 H 1.08000 * 120.01555 * 180.24906 * 20 19 18 37 37 H 1.08001 * 120.01748 * 179.97438 * 23 21 20 38 38 H 1.08005 * 119.98637 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1207 4.0078 9 1 1.8269 -0.4203 5.2204 10 1 1.8258 -2.5205 4.0075 11 1 3.8063 -1.1213 4.0080 12 7 2.0197 -0.6924 -1.1995 13 6 2.0824 0.2228 -2.3469 14 6 2.5885 -0.5212 -3.5558 15 8 2.8688 -1.6981 -3.4701 16 7 2.7296 0.1212 -4.7322 17 6 3.2210 -0.6023 -5.9075 18 6 3.2855 0.3367 -7.0845 19 6 2.1922 0.4735 -7.9195 20 6 2.2482 1.3384 -8.9959 21 6 3.4039 2.0592 -9.2448 22 9 3.4621 2.9002 -10.3005 23 6 4.5002 1.9170 -8.4111 24 6 4.4395 1.0565 -7.3314 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 0.7089 1.1611 3.4845 29 1 2.9172 -1.1204 -1.0288 30 1 1.0871 0.6165 -2.5525 31 1 2.7588 1.0464 -2.1181 32 1 2.5050 1.0624 -4.8007 33 1 4.2162 -0.9964 -5.7017 34 1 2.5443 -1.4255 -6.1366 35 1 1.2926 -0.0927 -7.7283 36 1 1.3926 1.4482 -9.6458 37 1 5.4024 2.4784 -8.6044 38 1 5.2946 0.9451 -6.6812 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602868678.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:25:34 Heat of formation + Delta-G solvation = -58.930116 kcal Electronic energy + Delta-G solvation = -20439.067955 eV Core-core repulsion = 17002.696517 eV Total energy + Delta-G solvation = -3436.371438 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.133 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -49.27425 -39.94282 -38.98045 -35.70405 -34.76023 -32.51524 -31.57398 -31.35737 -29.14079 -26.67262 -25.32550 -24.28895 -23.48324 -21.79420 -20.38561 -19.73794 -18.10158 -17.40619 -16.81777 -16.22027 -16.14399 -15.92214 -15.40271 -15.25639 -14.71177 -14.30232 -14.16198 -13.93659 -13.69271 -13.44459 -13.15520 -12.67081 -12.56331 -12.41723 -11.94053 -11.71379 -11.41558 -11.26137 -10.90966 -10.76934 -10.37337 -10.14766 -10.06670 -9.60551 -9.54712 -9.05305 -8.99675 -8.83822 -8.47500 -7.30257 -6.03619 -4.09578 0.62361 0.80125 2.94482 2.97466 3.32663 3.36410 3.40203 3.52750 3.84227 4.28574 4.28993 4.41192 4.48310 4.82409 4.83834 5.11185 5.26842 5.28511 5.40516 5.49694 5.50677 5.64484 5.69183 5.78497 5.86967 5.89566 6.10703 6.41409 6.45812 6.82706 7.10023 7.17953 7.41857 7.59361 7.78497 7.87147 8.25393 8.35908 8.46495 8.65013 9.00414 9.56326 11.02891 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.040397 B = 0.002524 C = 0.002496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 692.958595 B =11089.672073 C =11214.256831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.212 3.788 3 H 0.002 0.998 4 C -0.518 4.518 5 H 0.061 0.939 6 C 0.062 3.938 7 N -0.892 5.892 8 Si 0.899 3.101 9 H -0.287 1.287 10 H -0.276 1.276 11 H -0.277 1.277 12 N -0.673 5.673 13 C 0.044 3.956 14 C 0.513 3.487 15 O -0.524 6.524 16 N -0.738 5.738 17 C 0.162 3.838 18 C -0.114 4.114 19 C -0.071 4.071 20 C -0.156 4.156 21 C 0.102 3.898 22 F -0.140 7.140 23 C -0.156 4.156 24 C -0.071 4.071 25 H 0.003 0.997 26 H 0.033 0.967 27 H 0.082 0.918 28 H 0.262 0.738 29 H 0.341 0.659 30 H 0.093 0.907 31 H 0.049 0.951 32 H 0.400 0.600 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.137 0.863 36 H 0.137 0.863 37 H 0.137 0.863 38 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.492 4.139 -22.823 23.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.105 3.895 3 H 0.020 0.980 4 C -0.557 4.557 5 H 0.079 0.921 6 C -0.140 4.140 7 N -0.530 5.530 8 Si 0.727 3.273 9 H -0.213 1.213 10 H -0.201 1.201 11 H -0.203 1.203 12 N -0.306 5.306 13 C -0.089 4.089 14 C 0.300 3.700 15 O -0.398 6.398 16 N -0.393 5.393 17 C 0.039 3.961 18 C -0.115 4.115 19 C -0.089 4.089 20 C -0.174 4.174 21 C 0.082 3.918 22 F -0.119 7.119 23 C -0.174 4.174 24 C -0.090 4.090 25 H 0.022 0.978 26 H 0.052 0.948 27 H 0.100 0.900 28 H 0.071 0.929 29 H 0.159 0.841 30 H 0.111 0.889 31 H 0.067 0.933 32 H 0.234 0.766 33 H 0.094 0.906 34 H 0.095 0.905 35 H 0.154 0.846 36 H 0.155 0.845 37 H 0.155 0.845 38 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 3.995 3.151 -22.788 23.349 hybrid contribution 0.919 0.844 0.702 1.432 sum 4.914 3.996 -22.086 22.976 Atomic orbital electron populations 1.21739 0.97770 0.99563 0.99326 1.19152 0.92719 0.92273 0.85329 0.98039 1.21222 1.31555 1.12613 0.90311 0.92079 1.24915 0.95016 0.94999 0.99058 1.69884 1.36631 1.22890 1.23620 0.86548 0.79083 0.79833 0.81874 1.21315 1.20117 1.20306 1.60509 1.33428 1.31721 1.04938 1.21811 1.01259 0.94963 0.90874 1.21125 0.76948 0.87842 0.84045 1.90685 1.48639 1.15948 1.84509 1.46133 1.69505 1.14198 1.09436 1.20100 1.00952 0.92913 0.82124 1.20030 0.94405 0.99407 0.97671 1.21029 0.98343 0.96593 0.92985 1.21182 0.97625 0.98520 1.00102 1.17801 0.95621 0.91984 0.86355 1.91511 1.96897 1.68969 1.54500 1.21181 0.98477 1.01622 0.96168 1.21021 0.97917 0.94039 0.96011 0.97783 0.94772 0.89963 0.92850 0.84074 0.88890 0.93340 0.76628 0.90598 0.90542 0.84562 0.84513 0.84528 0.84608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.11 9.19 37.16 0.34 -2.77 16 2 C 0.21 5.37 2.60 -68.87 -0.18 5.20 16 3 H 0.00 0.05 7.80 -51.93 -0.40 -0.35 16 4 C -0.52 -14.37 8.59 -34.44 -0.30 -14.66 16 5 H 0.06 1.69 7.62 -52.49 -0.40 1.29 16 6 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 7 N -0.89 -25.31 11.32 55.43 0.63 -24.69 16 8 Si 0.90 21.39 29.54 -169.99 -5.02 16.37 16 9 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 10 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 12 N -0.67 -14.92 5.93 -109.22 -0.65 -15.57 16 13 C 0.04 0.76 5.97 -4.97 -0.03 0.73 16 14 C 0.51 8.18 7.87 -10.99 -0.09 8.09 16 15 O -0.52 -10.41 16.20 5.55 0.09 -10.32 16 16 N -0.74 -8.30 5.55 -61.47 -0.34 -8.64 16 17 C 0.16 1.59 5.80 -5.19 -0.03 1.56 16 18 C -0.11 -0.91 5.25 -104.62 -0.55 -1.46 16 19 C -0.07 -0.52 9.70 -39.59 -0.38 -0.91 16 20 C -0.16 -1.16 10.03 -39.52 -0.40 -1.55 16 21 C 0.10 0.85 7.30 -39.42 -0.29 0.56 16 22 F -0.14 -1.31 17.27 2.25 0.04 -1.27 16 23 C -0.16 -1.16 10.03 -39.51 -0.40 -1.55 16 24 C -0.07 -0.52 9.70 -39.60 -0.38 -0.91 16 25 H 0.00 0.07 7.45 -51.93 -0.39 -0.32 16 26 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 27 H 0.08 2.20 6.07 -51.93 -0.32 1.89 16 28 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 29 H 0.34 7.74 7.92 -39.30 -0.31 7.43 16 30 H 0.09 1.52 7.44 -51.93 -0.39 1.13 16 31 H 0.05 0.79 8.05 -51.93 -0.42 0.37 16 32 H 0.40 3.60 8.46 -40.82 -0.35 3.25 16 33 H 0.08 0.77 8.09 -51.93 -0.42 0.35 16 34 H 0.08 0.79 8.08 -51.93 -0.42 0.37 16 35 H 0.14 0.84 8.06 -52.48 -0.42 0.41 16 36 H 0.14 0.80 8.06 -52.49 -0.42 0.37 16 37 H 0.14 0.80 8.06 -52.49 -0.42 0.37 16 38 H 0.14 0.83 8.06 -52.48 -0.42 0.41 16 LS Contribution 330.11 15.07 4.97 4.97 Total: -1.00 -31.54 330.11 -8.11 -39.65 By element: Atomic # 1 Polarization: 10.60 SS G_CDS: -5.06 Total: 5.54 kcal Atomic # 6 Polarization: -3.28 SS G_CDS: -2.77 Total: -6.05 kcal Atomic # 7 Polarization: -48.53 SS G_CDS: -0.36 Total: -48.89 kcal Atomic # 8 Polarization: -10.41 SS G_CDS: 0.09 Total: -10.32 kcal Atomic # 9 Polarization: -1.31 SS G_CDS: 0.04 Total: -1.27 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -31.54 -8.11 -39.65 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602868678.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.284 kcal (2) G-P(sol) polarization free energy of solvation -31.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.646 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds