Wall clock time and date at job start Tue Mar 31 2020 02:56:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46910 * 110.99862 * 2 1 4 4 C 1.39190 * 110.99878 * 123.95153 * 2 1 3 5 5 C 1.39146 * 119.93647 * 299.99974 * 4 2 1 6 6 C 1.37653 * 120.09497 * 180.02562 * 5 4 2 7 7 C 1.39773 * 119.97128 * 359.97438 * 6 5 4 8 8 C 1.47513 * 120.06558 * 179.97438 * 7 6 5 9 9 O 1.21604 * 120.00067 * 20.69417 * 8 7 6 10 10 N 1.34782 * 120.00244 * 200.69620 * 8 7 6 11 11 C 1.46494 * 119.99938 * 6.95671 * 10 8 7 12 12 C 1.46493 * 119.99885 * 186.96055 * 10 8 7 13 13 C 1.50701 * 109.47177 * 269.99559 * 12 10 8 14 14 H 1.08003 * 120.00188 * 0.02562 * 13 12 10 15 15 C 1.37872 * 120.00350 * 180.02562 * 13 12 10 16 16 N 1.31516 * 120.00327 * 180.02562 * 15 13 12 17 17 Si 1.86804 * 120.00068 * 359.97438 * 15 13 12 18 18 H 1.48503 * 109.46716 * 90.00156 * 17 15 13 19 19 H 1.48497 * 109.47272 * 209.99836 * 17 15 13 20 20 H 1.48498 * 109.46949 * 330.00520 * 17 15 13 21 21 C 1.39815 * 119.87227 * 0.25399 * 7 6 5 22 22 C 1.37797 * 119.90430 * 359.51240 * 21 7 6 23 23 F 1.35096 * 119.98723 * 180.22737 * 22 21 7 24 24 H 1.09001 * 109.47333 * 296.04868 * 1 2 3 25 25 H 1.08997 * 109.46789 * 56.04643 * 1 2 3 26 26 H 1.08997 * 109.46681 * 176.04603 * 1 2 3 27 27 H 1.08993 * 109.46922 * 183.95637 * 3 2 1 28 28 H 1.09003 * 109.46557 * 303.95236 * 3 2 1 29 29 H 1.09002 * 109.47019 * 63.95350 * 3 2 1 30 30 H 1.07999 * 119.95294 * 0.02562 * 5 4 2 31 31 H 1.07995 * 120.01440 * 179.97438 * 6 5 4 32 32 H 1.09006 * 109.47504 * 266.60943 * 11 10 8 33 33 H 1.09001 * 109.47062 * 26.60907 * 11 10 8 34 34 H 1.08996 * 109.47234 * 146.61118 * 11 10 8 35 35 H 1.09007 * 109.47256 * 149.99971 * 12 10 8 36 36 H 1.08994 * 109.47859 * 29.99800 * 12 10 8 37 37 H 0.96996 * 120.00157 * 180.02562 * 16 15 13 38 38 H 1.08003 * 120.04622 * 179.74816 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.9678 -0.7257 1.0779 5 6 1.6538 -0.3422 2.3781 6 6 2.1457 -1.0573 3.4465 7 6 2.9614 -2.1706 3.2255 8 6 3.4902 -2.9380 4.3689 9 8 2.9474 -2.8633 5.4545 10 7 4.5750 -3.7221 4.2105 11 6 5.3194 -3.6964 2.9491 12 6 5.0096 -4.5999 5.2998 13 6 5.9839 -3.8620 6.1814 14 1 6.2522 -2.8409 5.9534 15 6 6.5328 -4.4901 7.2791 16 7 7.3827 -3.8459 8.0488 17 14 6.0683 -6.2559 7.6741 18 1 7.0062 -7.1798 6.9872 19 1 6.1463 -6.4719 9.1412 20 1 4.6833 -6.5195 7.2077 21 6 3.2801 -2.5519 1.9187 22 6 2.7808 -1.8353 0.8528 23 9 3.0839 -2.2051 -0.4107 24 1 -0.3634 0.4513 0.9233 25 1 -0.3633 0.5740 -0.8524 26 1 -0.3632 -1.0252 -0.0709 27 1 3.0827 1.3433 -0.0709 28 1 1.5898 1.9163 -0.8525 29 1 1.7044 1.8724 0.9233 30 1 1.0232 0.5177 2.5492 31 1 1.9015 -0.7582 4.4551 32 1 4.9469 -4.4817 2.2912 33 1 5.1869 -2.7270 2.4687 34 1 6.3781 -3.8615 3.1485 35 1 5.4937 -5.4834 4.8834 36 1 4.1444 -4.9035 5.8891 37 1 7.7691 -4.2880 8.8208 38 1 3.9134 -3.4093 1.7447 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000604529962.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:56:37 Heat of formation + Delta-G solvation = -10.966199 kcal Electronic energy + Delta-G solvation = -21775.115174 eV Core-core repulsion = 18340.823608 eV Total energy + Delta-G solvation = -3434.291566 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.133 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -48.80109 -40.31403 -38.91430 -36.41087 -35.21934 -32.66613 -30.94941 -30.30382 -28.27151 -27.92074 -26.58656 -25.08753 -23.12962 -22.40608 -21.34579 -19.43263 -17.42732 -17.12477 -16.94803 -16.64890 -15.90045 -15.67194 -15.27392 -14.90288 -14.81529 -14.61772 -14.25954 -13.98770 -13.52237 -13.07925 -12.80061 -12.71224 -12.63211 -12.37240 -12.18260 -12.05379 -11.97964 -11.85102 -11.65549 -11.04520 -10.89178 -10.56641 -10.13863 -9.59749 -9.27064 -9.00255 -8.87939 -8.69333 -8.61338 -7.80977 -6.10373 -4.09648 0.65990 1.09518 2.98183 3.25571 3.33628 3.37520 3.45522 3.62676 3.87874 4.17848 4.37822 4.56600 4.78223 4.84142 4.97547 4.99902 5.07821 5.17166 5.21767 5.28938 5.33307 5.53572 5.55796 5.57750 5.65681 5.75168 5.90477 6.07398 6.11656 6.20755 6.46714 6.49116 6.61279 6.89447 7.04144 7.21956 7.56935 8.09624 8.42972 8.79678 8.93629 9.48993 11.02992 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.035370 B = 0.003913 C = 0.003780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 791.450066 B = 7154.648043 C = 7405.460185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.509 5.509 3 C 0.028 3.972 4 C 0.063 3.937 5 C -0.132 4.132 6 C -0.064 4.064 7 C -0.092 4.092 8 C 0.546 3.454 9 O -0.527 6.527 10 N -0.588 5.588 11 C 0.067 3.933 12 C 0.216 3.784 13 C -0.530 4.530 14 H 0.075 0.925 15 C 0.073 3.927 16 N -0.896 5.896 17 Si 0.875 3.125 18 H -0.275 1.275 19 H -0.283 1.283 20 H -0.264 1.264 21 C -0.143 4.143 22 C 0.113 3.887 23 F -0.128 7.128 24 H 0.034 0.966 25 H 0.074 0.926 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.075 0.925 29 H 0.034 0.966 30 H 0.132 0.868 31 H 0.142 0.858 32 H 0.054 0.946 33 H 0.075 0.925 34 H 0.079 0.921 35 H 0.029 0.971 36 H 0.042 0.958 37 H 0.265 0.735 38 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.399 6.642 -17.652 22.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 N -0.230 5.230 3 C -0.119 4.119 4 C -0.032 4.032 5 C -0.152 4.152 6 C -0.084 4.084 7 C -0.095 4.095 8 C 0.333 3.667 9 O -0.405 6.405 10 N -0.319 5.319 11 C -0.076 4.076 12 C 0.096 3.904 13 C -0.568 4.568 14 H 0.093 0.907 15 C -0.130 4.130 16 N -0.535 5.535 17 Si 0.702 3.298 18 H -0.200 1.200 19 H -0.209 1.209 20 H -0.188 1.188 21 C -0.162 4.162 22 C 0.093 3.907 23 F -0.106 7.106 24 H 0.053 0.947 25 H 0.093 0.907 26 H 0.090 0.910 27 H 0.091 0.909 28 H 0.093 0.907 29 H 0.053 0.947 30 H 0.150 0.850 31 H 0.160 0.840 32 H 0.072 0.928 33 H 0.093 0.907 34 H 0.098 0.902 35 H 0.047 0.953 36 H 0.060 0.940 37 H 0.075 0.925 38 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -11.386 6.407 -17.396 21.755 hybrid contribution -0.238 -0.474 0.765 0.932 sum -11.624 5.933 -16.630 21.139 Atomic orbital electron populations 1.22484 0.85422 1.02952 1.01066 1.59375 1.08822 1.14472 1.40346 1.22487 1.01307 0.87026 1.01067 1.18882 0.99020 0.95415 0.89932 1.21417 1.01217 1.00751 0.91779 1.21207 0.94260 0.92934 0.99991 1.20109 0.99180 0.97216 0.92997 1.17986 0.81270 0.80123 0.87309 1.90787 1.59855 1.63737 1.26079 1.47737 1.26516 1.41669 1.15937 1.22305 0.98341 1.00873 0.86095 1.19733 0.96321 0.89124 0.85250 1.21304 1.24295 1.01346 1.09851 0.90664 1.24858 0.94532 0.98030 0.95574 1.69893 1.29950 1.37266 1.16364 0.86864 0.79632 0.85185 0.78165 1.20046 1.20885 1.18838 1.22366 1.00756 1.02162 0.90919 1.17364 0.98747 0.95200 0.79415 1.91499 1.91374 1.90719 1.37012 0.94741 0.90675 0.90986 0.90917 0.90668 0.94737 0.84973 0.84034 0.92788 0.90683 0.90248 0.95288 0.94006 0.92517 0.81483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 9.34 60.07 0.56 0.78 16 2 N -0.51 -5.31 4.80 -186.78 -0.90 -6.21 16 3 C 0.03 0.23 9.38 60.07 0.56 0.79 16 4 C 0.06 0.76 4.73 -83.76 -0.40 0.36 16 5 C -0.13 -1.52 8.53 -39.46 -0.34 -1.86 16 6 C -0.06 -0.91 9.57 -39.22 -0.38 -1.28 16 7 C -0.09 -1.47 5.57 -104.95 -0.58 -2.05 16 8 C 0.55 11.29 7.50 -12.48 -0.09 11.20 16 9 O -0.53 -12.99 16.18 5.27 0.09 -12.91 16 10 N -0.59 -12.07 2.86 -184.21 -0.53 -12.59 16 11 C 0.07 1.02 8.64 59.84 0.52 1.54 16 12 C 0.22 5.22 4.19 -5.20 -0.02 5.20 16 13 C -0.53 -15.16 9.94 -34.44 -0.34 -15.50 16 14 H 0.08 2.37 8.06 -52.48 -0.42 1.95 16 15 C 0.07 2.11 5.47 -17.82 -0.10 2.01 16 16 N -0.90 -27.57 13.96 55.43 0.77 -26.80 16 17 Si 0.87 21.31 27.47 -169.99 -4.67 16.64 16 18 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 19 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 20 H -0.26 -6.25 6.54 56.52 0.37 -5.88 16 21 C -0.14 -1.95 7.57 -39.15 -0.30 -2.24 16 22 C 0.11 1.48 7.30 -39.32 -0.29 1.19 16 23 F -0.13 -1.71 17.07 2.25 0.04 -1.68 16 24 H 0.03 0.26 7.10 -51.93 -0.37 -0.11 16 25 H 0.07 0.48 8.12 -51.93 -0.42 0.06 16 26 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 27 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.07 0.49 8.12 -51.93 -0.42 0.07 16 29 H 0.03 0.26 7.32 -51.93 -0.38 -0.12 16 30 H 0.13 1.22 6.99 -52.49 -0.37 0.85 16 31 H 0.14 2.03 7.78 -52.49 -0.41 1.62 16 32 H 0.05 0.66 6.97 -51.93 -0.36 0.30 16 33 H 0.07 1.02 5.28 -51.93 -0.27 0.75 16 34 H 0.08 1.24 8.10 -51.93 -0.42 0.82 16 35 H 0.03 0.65 7.50 -51.92 -0.39 0.26 16 36 H 0.04 1.08 6.59 -51.93 -0.34 0.74 16 37 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 38 H 0.17 2.06 4.02 -52.48 -0.21 1.85 16 LS Contribution 317.35 15.07 4.78 4.78 Total: -1.00 -33.88 317.35 -6.40 -40.28 By element: Atomic # 1 Polarization: 3.14 SS G_CDS: -4.80 Total: -1.66 kcal Atomic # 6 Polarization: 1.33 SS G_CDS: -1.19 Total: 0.14 kcal Atomic # 7 Polarization: -44.95 SS G_CDS: -0.65 Total: -45.60 kcal Atomic # 8 Polarization: -12.99 SS G_CDS: 0.09 Total: -12.91 kcal Atomic # 9 Polarization: -1.71 SS G_CDS: 0.04 Total: -1.68 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -4.67 Total: 16.64 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -33.88 -6.40 -40.28 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000604529962.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.317 kcal (2) G-P(sol) polarization free energy of solvation -33.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds