Wall clock time and date at job start Tue Mar 31 2020 02:17:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.47200 * 2 1 4 4 N 1.46899 * 109.47170 * 120.00133 * 2 1 3 5 5 C 1.46895 * 110.99981 * 274.78926 * 4 2 1 6 6 C 1.53039 * 109.44830 * 153.44975 * 5 4 2 7 7 C 1.53194 * 109.31232 * 181.37505 * 6 5 4 8 8 N 1.46923 * 108.77721 * 305.36644 * 7 6 5 9 9 C 1.36939 * 120.63079 * 233.59017 * 8 7 6 10 10 H 1.08003 * 120.00188 * 29.21651 * 9 8 7 11 11 C 1.38813 * 119.99815 * 209.22314 * 9 8 7 12 12 N 1.31617 * 120.00347 * 16.31053 * 11 9 8 13 13 Si 1.86799 * 120.00066 * 196.30758 * 11 9 8 14 14 H 1.48501 * 109.47031 * 0.02562 * 13 11 9 15 15 H 1.48503 * 109.47072 * 120.00019 * 13 11 9 16 16 H 1.48501 * 109.47432 * 240.00219 * 13 11 9 17 17 C 1.46924 * 118.74038 * 53.60597 * 8 7 6 18 18 C 1.53048 * 109.45709 * 273.50864 * 5 4 2 19 19 C 1.50703 * 109.46759 * 240.00126 * 2 1 3 20 20 C 1.33393 * 125.20157 * 99.72220 * 19 2 1 21 21 C 1.38429 * 114.91678 * 179.85881 * 20 19 2 22 22 C 1.33387 * 114.92130 * 0.43001 * 21 20 19 23 23 S 1.75879 * 125.20232 * 280.02240 * 19 2 1 24 24 H 1.09000 * 109.47578 * 185.07082 * 1 2 3 25 25 H 1.08999 * 109.46982 * 305.06897 * 1 2 3 26 26 H 1.09002 * 109.47224 * 65.06671 * 1 2 3 27 27 H 1.00898 * 110.99713 * 150.83224 * 4 2 1 28 28 H 1.08993 * 109.46515 * 33.48060 * 5 4 2 29 29 H 1.08996 * 109.49884 * 301.32222 * 6 5 4 30 30 H 1.08997 * 109.50110 * 61.42917 * 6 5 4 31 31 H 1.09000 * 109.58844 * 185.57747 * 7 6 5 32 32 H 1.09005 * 109.70508 * 65.21847 * 7 6 5 33 33 H 0.97002 * 120.00567 * 179.97438 * 12 11 9 34 34 H 1.09004 * 109.58994 * 186.60859 * 17 8 7 35 35 H 1.08993 * 109.70364 * 66.25206 * 17 8 7 36 36 H 1.09000 * 109.49453 * 298.58023 * 18 5 4 37 37 H 1.08996 * 109.49606 * 58.64430 * 18 5 4 38 38 H 1.07994 * 122.53830 * 0.02562 * 20 19 2 39 39 H 1.07996 * 122.53457 * 180.19791 * 21 20 19 40 40 H 1.07995 * 125.20201 * 179.75508 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 2.0872 0.2237 2.3456 6 6 1.9428 -0.5731 3.6441 7 6 1.9792 0.3890 4.8357 8 7 3.2050 1.1950 4.7555 9 6 4.0679 1.2599 5.8168 10 1 4.1483 0.4267 6.4993 11 6 4.8394 2.3968 6.0154 12 7 4.5280 3.5189 5.4021 13 14 6.3194 2.3341 7.1533 14 1 6.4541 0.9662 7.7154 15 1 7.5458 2.6778 6.3897 16 1 6.1355 3.3082 8.2590 17 6 3.4871 1.9302 3.5152 18 6 3.4339 0.9508 2.3384 19 6 2.0323 -0.7104 -1.2305 20 6 2.4621 -0.1118 -2.3424 21 6 2.8795 -0.9717 -3.3437 22 6 2.7803 -2.2687 -3.0482 23 16 2.1343 -2.4556 -1.4230 24 1 -0.3634 -1.0236 0.0908 25 1 -0.3633 0.5905 0.8411 26 1 -0.3634 0.4332 -0.9319 27 1 2.9157 -1.1234 1.0276 28 1 1.2804 0.9531 2.2755 29 1 0.9938 -1.1092 3.6384 30 1 2.7633 -1.2858 3.7269 31 1 1.9763 -0.1803 5.7653 32 1 1.1085 1.0442 4.8058 33 1 5.0668 4.3134 5.5412 34 1 4.4793 2.3779 3.5733 35 1 2.7412 2.7122 3.3738 36 1 4.2404 0.2237 2.4334 37 1 3.5464 1.4988 1.4029 38 1 2.4852 0.9623 -2.4520 39 1 3.2535 -0.6192 -4.2935 40 1 3.0544 -3.0798 -3.7064 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610812993.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:17:15 Heat of formation + Delta-G solvation = 32.284780 kcal Electronic energy + Delta-G solvation = -19864.673079 eV Core-core repulsion = 16998.470192 eV Total energy + Delta-G solvation = -2866.202887 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 280.130 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.00357 -38.77681 -36.95143 -34.56018 -32.58523 -31.51294 -29.95677 -29.19539 -26.61624 -25.08105 -23.81792 -23.33172 -22.02589 -21.00441 -20.05888 -18.86619 -18.02626 -16.94326 -16.53676 -16.11260 -15.90850 -15.37124 -15.33983 -14.95452 -14.78054 -14.32000 -14.00560 -13.77424 -13.51969 -13.21658 -13.06729 -13.02785 -12.94264 -12.67767 -12.57744 -12.49661 -12.18310 -12.07957 -11.92587 -11.78111 -11.53374 -11.37566 -11.18601 -10.58175 -9.57085 -9.39539 -9.32008 -8.67339 -7.88585 -5.35251 0.10848 0.76698 1.19761 1.44831 1.46725 1.57530 1.86115 2.50282 3.10975 3.28294 3.68112 3.70246 3.98075 4.13020 4.27158 4.34307 4.36469 4.45943 4.54590 4.63157 4.69766 4.72131 4.75819 4.84612 4.96423 4.96936 5.08690 5.21059 5.23338 5.24231 5.33809 5.37379 5.41266 5.48831 5.58530 5.63784 5.69701 6.08497 6.38934 6.39630 7.14205 7.85344 8.37625 9.17765 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.029089 B = 0.003779 C = 0.003653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.340591 B = 7407.324322 C = 7662.146641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.152 3.848 3 H 0.054 0.946 4 N -0.674 5.674 5 C 0.108 3.892 6 C -0.103 4.103 7 C 0.141 3.859 8 N -0.610 5.610 9 C -0.263 4.263 10 H 0.065 0.935 11 C -0.050 4.050 12 N -0.935 5.935 13 Si 0.966 3.034 14 H -0.266 1.266 15 H -0.290 1.290 16 H -0.291 1.291 17 C 0.184 3.816 18 C -0.150 4.150 19 C -0.191 4.191 20 C -0.146 4.146 21 C -0.143 4.143 22 C -0.224 4.224 23 S 0.117 5.883 24 H 0.061 0.939 25 H 0.056 0.944 26 H 0.067 0.933 27 H 0.340 0.660 28 H 0.068 0.932 29 H 0.079 0.921 30 H 0.051 0.949 31 H 0.054 0.946 32 H 0.014 0.986 33 H 0.249 0.751 34 H 0.048 0.952 35 H -0.004 1.004 36 H 0.049 0.951 37 H 0.057 0.943 38 H 0.144 0.856 39 H 0.158 0.842 40 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.970 -10.578 -17.519 21.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.041 3.959 3 H 0.072 0.928 4 N -0.304 5.304 5 C -0.002 4.002 6 C -0.142 4.142 7 C 0.015 3.985 8 N -0.334 5.334 9 C -0.394 4.394 10 H 0.083 0.917 11 C -0.245 4.245 12 N -0.582 5.582 13 Si 0.794 3.206 14 H -0.191 1.191 15 H -0.217 1.217 16 H -0.218 1.218 17 C 0.058 3.942 18 C -0.191 4.191 19 C -0.309 4.309 20 C -0.177 4.177 21 C -0.174 4.174 22 C -0.359 4.359 23 S 0.380 5.620 24 H 0.080 0.920 25 H 0.075 0.925 26 H 0.086 0.914 27 H 0.159 0.841 28 H 0.087 0.913 29 H 0.098 0.902 30 H 0.070 0.930 31 H 0.073 0.927 32 H 0.032 0.968 33 H 0.059 0.941 34 H 0.067 0.933 35 H 0.014 0.986 36 H 0.068 0.932 37 H 0.076 0.924 38 H 0.162 0.838 39 H 0.175 0.825 40 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -6.882 -11.960 -16.422 21.449 hybrid contribution 2.010 2.308 -0.391 3.086 sum -4.872 -9.651 -16.813 19.989 Atomic orbital electron populations 1.21774 0.92630 1.02567 1.01821 1.20009 0.96399 0.94710 0.84778 0.92783 1.60894 1.33495 1.32248 1.03762 1.21316 0.95443 0.92830 0.90564 1.21788 1.01662 0.97425 0.93329 1.21078 0.87764 0.92541 0.97101 1.44316 1.21780 1.55579 1.11745 1.19556 1.16330 0.98020 1.05470 0.91682 1.25823 1.03395 0.94362 1.00927 1.70185 1.39947 1.00146 1.47880 0.85226 0.79387 0.77780 0.78182 1.19052 1.21697 1.21781 1.20438 0.98688 0.91108 0.84015 1.22644 0.98526 0.99539 0.98381 1.24677 1.08661 0.97250 1.00277 1.20381 1.02230 1.01959 0.93137 1.20374 1.03283 0.92308 1.01389 1.26056 1.08452 1.01342 1.00083 1.84462 1.62449 1.03677 1.11362 0.91977 0.92503 0.91367 0.84129 0.91339 0.90232 0.93027 0.92723 0.96798 0.94141 0.93340 0.98617 0.93193 0.92425 0.83788 0.82453 0.79844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.84 9.36 71.98 0.67 -2.17 16 2 C 0.15 3.68 2.85 44.17 0.13 3.81 16 3 H 0.05 1.41 7.20 -2.39 -0.02 1.39 16 4 N -0.67 -18.24 5.86 -473.17 -2.77 -21.01 16 5 C 0.11 3.51 2.23 44.95 0.10 3.61 16 6 C -0.10 -3.50 5.69 30.67 0.17 -3.33 16 7 C 0.14 5.93 6.52 86.36 0.56 6.49 16 8 N -0.61 -31.23 2.99 -699.09 -2.09 -33.31 16 9 C -0.26 -14.77 9.57 84.03 0.80 -13.96 16 10 H 0.07 3.57 7.88 -2.91 -0.02 3.54 16 11 C -0.05 -2.82 4.92 84.86 0.42 -2.40 16 12 N -0.94 -56.09 11.24 21.65 0.24 -55.84 16 13 Si 0.97 45.39 29.58 68.60 2.03 47.42 16 14 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 15 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 16 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 17 C 0.18 9.02 5.29 86.36 0.46 9.48 16 18 C -0.15 -5.69 5.31 30.68 0.16 -5.53 16 19 C -0.19 -4.25 5.14 24.59 0.13 -4.12 16 20 C -0.15 -2.95 10.04 21.22 0.21 -2.74 16 21 C -0.14 -2.49 10.18 21.22 0.22 -2.27 16 22 C -0.22 -3.77 11.23 66.72 0.75 -3.02 16 23 S 0.12 2.37 22.88 -56.49 -1.29 1.08 16 24 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 25 H 0.06 1.29 7.53 -2.39 -0.02 1.27 16 26 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 27 H 0.34 9.39 7.87 -89.70 -0.71 8.68 16 28 H 0.07 2.29 7.17 -2.39 -0.02 2.28 16 29 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 30 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 31 H 0.05 2.26 7.93 -2.39 -0.02 2.24 16 32 H 0.01 0.60 8.14 -2.38 -0.02 0.58 16 33 H 0.25 14.43 8.31 -92.71 -0.77 13.66 16 34 H 0.05 2.71 6.12 -2.39 -0.01 2.69 16 35 H 0.00 -0.22 8.14 -2.39 -0.02 -0.24 16 36 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 37 H 0.06 2.00 7.53 -2.39 -0.02 1.99 16 38 H 0.14 2.61 8.06 -2.91 -0.02 2.59 16 39 H 0.16 1.98 8.06 -2.91 -0.02 1.96 16 40 H 0.18 2.11 8.06 -2.91 -0.02 2.09 16 Total: -1.00 -62.52 330.92 1.21 -61.31 By element: Atomic # 1 Polarization: 16.20 SS G_CDS: 0.31 Total: 16.51 kcal Atomic # 6 Polarization: -20.93 SS G_CDS: 4.78 Total: -16.14 kcal Atomic # 7 Polarization: -105.55 SS G_CDS: -4.62 Total: -110.17 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 2.03 Total: 47.42 kcal Atomic # 16 Polarization: 2.37 SS G_CDS: -1.29 Total: 1.08 kcal Total: -62.52 1.21 -61.31 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610812993.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.595 kcal (2) G-P(sol) polarization free energy of solvation -62.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.310 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds