Wall clock time and date at job start Tue Mar 31 2020 01:56:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47580 * 2 1 4 4 N 1.46907 * 109.47004 * 120.00300 * 2 1 3 5 5 C 1.46890 * 111.00002 * 170.99075 * 4 2 1 6 6 C 1.50708 * 109.47324 * 293.95118 * 5 4 2 7 7 H 1.07994 * 119.99660 * 0.02562 * 6 5 4 8 8 C 1.37872 * 120.00158 * 180.02562 * 6 5 4 9 9 N 1.31520 * 120.00253 * 359.97438 * 8 6 5 10 10 Si 1.86794 * 120.00228 * 180.02562 * 8 6 5 11 11 H 1.48496 * 109.47484 * 89.99766 * 10 8 6 12 12 H 1.48497 * 109.47365 * 209.99872 * 10 8 6 13 13 H 1.48502 * 109.47101 * 329.99713 * 10 8 6 14 14 C 1.46902 * 110.99574 * 294.94625 * 4 2 1 15 15 C 1.50698 * 109.46938 * 163.59876 * 14 4 2 16 16 N 1.28335 * 124.90793 * 89.24826 * 15 14 4 17 17 C 1.33487 * 117.83948 * 179.85615 * 16 15 14 18 18 C 1.33865 * 113.18222 * 0.39995 * 17 16 15 19 19 S 1.70751 * 124.90370 * 269.55678 * 15 14 4 20 20 C 1.51711 * 110.89128 * 179.82291 * 18 17 16 21 21 C 1.54304 * 104.80950 * 17.23364 * 20 18 17 22 22 C 1.52619 * 137.15087 * 180.02562 * 17 16 15 23 23 H 1.09002 * 109.46916 * 306.55917 * 1 2 3 24 24 H 1.09003 * 109.46751 * 66.55226 * 1 2 3 25 25 H 1.08995 * 109.47902 * 186.55459 * 1 2 3 26 26 H 1.09000 * 109.47113 * 239.99552 * 2 1 3 27 27 H 1.09002 * 109.47022 * 179.97438 * 3 2 1 28 28 H 1.08994 * 109.47240 * 300.00377 * 3 2 1 29 29 H 1.09003 * 109.46948 * 60.00041 * 3 2 1 30 30 H 1.08997 * 109.47460 * 53.95269 * 5 4 2 31 31 H 1.09000 * 109.47173 * 173.95318 * 5 4 2 32 32 H 0.97001 * 120.00349 * 179.97438 * 9 8 6 33 33 H 1.08996 * 109.46877 * 283.59415 * 14 4 2 34 34 H 1.09000 * 109.47599 * 43.59918 * 14 4 2 35 35 H 1.09003 * 110.37142 * 136.06265 * 20 18 17 36 36 H 1.09002 * 110.37272 * 258.28808 * 20 18 17 37 37 H 1.09001 * 110.97537 * 91.91624 * 21 20 18 38 38 H 1.08998 * 110.97418 * 215.65221 * 21 20 18 39 39 H 1.09001 * 110.31688 * 44.04820 * 22 17 16 40 40 H 1.09001 * 110.31931 * 281.85554 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0196 -0.6926 1.1995 5 6 3.4720 -0.9010 1.1309 6 6 3.7901 -1.8569 0.0101 7 1 2.9930 -2.2681 -0.5914 8 6 5.0987 -2.2065 -0.2474 9 7 6.0695 -1.7054 0.4848 10 14 5.4930 -3.3908 -1.6371 11 1 5.7110 -2.6269 -2.8917 12 1 6.7218 -4.1547 -1.3029 13 1 4.3596 -4.3325 -1.8215 14 6 1.6497 0.0397 2.4180 15 6 1.7986 -0.8661 3.6131 16 7 2.8731 -1.0034 4.3013 17 6 2.8468 -1.8449 5.3371 18 6 1.6609 -2.4443 5.4990 19 16 0.5641 -1.8637 4.2428 20 6 1.6902 -3.3901 6.6849 21 6 2.9294 -2.9633 7.4992 22 6 3.8182 -2.3299 6.4097 23 1 -0.3633 0.6122 0.8255 24 1 -0.3633 0.4089 -0.9428 25 1 -0.3635 -1.0208 0.1173 26 1 1.8933 -0.5139 -0.8899 27 1 3.1301 1.4423 0.0005 28 1 1.6768 1.9563 -0.8899 29 1 1.6768 1.9563 0.8900 30 1 3.9677 0.0522 0.9471 31 1 3.8243 -1.3175 2.0746 32 1 6.9902 -1.9516 0.3039 33 1 2.3025 0.9048 2.5342 34 1 0.6148 0.3732 2.3416 35 1 0.7859 -3.2769 7.2829 36 1 1.7934 -4.4208 6.3458 37 1 2.6627 -2.2300 8.2603 38 1 3.4182 -3.8281 7.9479 39 1 4.3792 -1.4902 6.8198 40 1 4.4982 -3.0744 5.9957 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611410766.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:56:14 Heat of formation + Delta-G solvation = 28.944218 kcal Electronic energy + Delta-G solvation = -20071.954605 eV Core-core repulsion = 17205.606861 eV Total energy + Delta-G solvation = -2866.347745 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 280.130 amu Computer time = 3.31 seconds Orbital eigenvalues (eV) -41.23808 -39.45514 -36.91988 -34.89810 -32.75429 -30.74472 -29.35578 -28.44914 -27.96932 -26.69631 -24.15607 -23.62040 -21.99464 -20.53565 -19.70246 -18.85007 -18.30489 -17.08502 -16.87066 -16.54134 -15.91369 -15.35740 -14.98065 -14.84489 -14.44800 -14.34778 -14.11813 -13.99118 -13.78461 -13.56939 -13.17690 -12.87340 -12.74623 -12.64563 -12.58939 -12.36703 -12.10087 -12.08723 -12.05067 -11.86323 -11.75901 -11.49063 -11.19277 -10.61035 -10.37529 -10.06920 -9.43425 -9.01646 -8.18795 -6.28698 -0.17070 0.37509 0.89689 1.36102 1.38264 1.49418 1.82195 2.38404 2.87114 3.13238 3.38907 3.62153 3.80350 4.05992 4.11180 4.14683 4.26851 4.35968 4.49082 4.55403 4.58383 4.71164 4.76596 4.79700 4.82881 4.89500 4.98860 5.01629 5.09349 5.11086 5.27023 5.29242 5.30044 5.33859 5.48801 5.54831 5.67281 6.08338 6.36683 6.59726 6.87990 6.93490 7.39645 8.92119 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.014227 B = 0.006239 C = 0.004857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1967.606570 B = 4487.048987 C = 5763.731334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.075 3.925 3 C -0.173 4.173 4 N -0.529 5.529 5 C 0.210 3.790 6 C -0.519 4.519 7 H 0.062 0.938 8 C -0.001 4.001 9 N -0.934 5.934 10 Si 0.966 3.034 11 H -0.270 1.270 12 H -0.284 1.284 13 H -0.265 1.265 14 C 0.127 3.873 15 C 0.056 3.944 16 N -0.505 5.505 17 C 0.007 3.993 18 C -0.263 4.263 19 S 0.175 5.825 20 C -0.033 4.033 21 C -0.098 4.098 22 C -0.046 4.046 23 H 0.064 0.936 24 H 0.077 0.923 25 H 0.057 0.943 26 H 0.068 0.932 27 H 0.024 0.976 28 H 0.078 0.922 29 H 0.062 0.938 30 H -0.036 1.036 31 H 0.008 0.992 32 H 0.261 0.739 33 H 0.041 0.959 34 H 0.120 0.880 35 H 0.100 0.900 36 H 0.092 0.908 37 H 0.091 0.909 38 H 0.113 0.887 39 H 0.078 0.922 40 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.138 -0.268 11.070 17.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.033 4.033 3 C -0.232 4.232 4 N -0.253 5.253 5 C 0.083 3.917 6 C -0.557 4.557 7 H 0.080 0.920 8 C -0.198 4.198 9 N -0.575 5.575 10 Si 0.791 3.209 11 H -0.195 1.195 12 H -0.210 1.210 13 H -0.189 1.189 14 C -0.004 4.004 15 C -0.223 4.223 16 N -0.220 5.220 17 C -0.123 4.123 18 C -0.384 4.384 19 S 0.432 5.568 20 C -0.073 4.073 21 C -0.137 4.137 22 C -0.086 4.086 23 H 0.083 0.917 24 H 0.096 0.904 25 H 0.076 0.924 26 H 0.086 0.914 27 H 0.043 0.957 28 H 0.097 0.903 29 H 0.081 0.919 30 H -0.019 1.019 31 H 0.026 0.974 32 H 0.070 0.930 33 H 0.059 0.941 34 H 0.138 0.862 35 H 0.118 0.882 36 H 0.110 0.890 37 H 0.110 0.890 38 H 0.131 0.869 39 H 0.097 0.903 40 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -13.800 -0.585 10.617 17.421 hybrid contribution 2.289 0.376 -0.548 2.383 sum -11.511 -0.209 10.070 15.295 Atomic orbital electron populations 1.21821 0.92238 1.02276 1.02652 1.21728 0.96520 0.92165 0.92871 1.22351 1.00100 0.97997 1.02766 1.62266 1.15690 1.46674 1.00695 1.19366 0.82655 0.93537 0.96110 1.21466 0.92273 1.26537 1.15455 0.92018 1.25918 0.96183 0.98390 0.99352 1.70143 1.00009 1.45928 1.41389 0.85431 0.77666 0.78812 0.79014 1.19527 1.20977 1.18914 1.20686 1.02324 0.91682 0.85714 1.26817 0.91777 1.02657 1.01042 1.65373 1.28305 1.21221 1.07053 1.22259 0.97655 0.96178 0.96234 1.27658 0.97596 1.07644 1.05500 1.83026 1.14756 1.37556 1.21451 1.20827 1.00715 0.95977 0.89800 1.22368 0.93644 1.02006 0.95695 1.21033 0.95867 1.00192 0.91482 0.91677 0.90416 0.92421 0.91361 0.95655 0.90299 0.91948 1.01880 0.97399 0.93005 0.94062 0.86233 0.88165 0.89020 0.89040 0.86887 0.90343 0.90535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.61 8.97 71.98 0.65 -2.96 16 2 C 0.08 2.83 2.79 44.91 0.13 2.95 16 3 C -0.17 -6.02 8.51 71.98 0.61 -5.41 16 4 N -0.53 -23.42 4.40 -880.08 -3.87 -27.28 16 5 C 0.21 11.85 4.44 85.56 0.38 12.23 16 6 C -0.52 -30.76 8.39 25.60 0.21 -30.55 16 7 H 0.06 3.56 7.17 -2.91 -0.02 3.54 16 8 C 0.00 -0.05 5.46 84.65 0.46 0.41 16 9 N -0.93 -59.49 13.29 21.45 0.28 -59.20 16 10 Si 0.97 46.21 29.54 68.60 2.03 48.23 16 11 H -0.27 -12.33 7.11 99.48 0.71 -11.63 16 12 H -0.28 -13.34 7.11 99.48 0.71 -12.64 16 13 H -0.26 -12.18 7.11 99.48 0.71 -11.47 16 14 C 0.13 4.87 4.31 85.56 0.37 5.24 16 15 C 0.06 2.25 6.28 88.62 0.56 2.81 16 16 N -0.50 -22.49 9.60 -176.80 -1.70 -24.19 16 17 C 0.01 0.25 7.70 41.93 0.32 0.57 16 18 C -0.26 -8.07 7.42 25.01 0.19 -7.89 16 19 S 0.18 5.48 23.18 -56.49 -1.31 4.17 16 20 C -0.03 -0.67 6.80 30.61 0.21 -0.46 16 21 C -0.10 -1.70 7.12 31.45 0.22 -1.48 16 22 C -0.05 -1.27 6.81 30.88 0.21 -1.06 16 23 H 0.06 1.52 6.53 -2.39 -0.02 1.50 16 24 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 25 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 26 H 0.07 2.92 6.66 -2.39 -0.02 2.91 16 27 H 0.02 1.06 6.54 -2.39 -0.02 1.04 16 28 H 0.08 2.25 8.14 -2.39 -0.02 2.24 16 29 H 0.06 1.93 6.71 -2.39 -0.02 1.91 16 30 H -0.04 -2.25 6.35 -2.39 -0.02 -2.26 16 31 H 0.01 0.50 6.58 -2.39 -0.02 0.49 16 32 H 0.26 15.66 8.31 -92.71 -0.77 14.89 16 33 H 0.04 1.70 7.16 -2.39 -0.02 1.69 16 34 H 0.12 3.59 5.99 -2.39 -0.01 3.58 16 35 H 0.10 1.50 8.14 -2.39 -0.02 1.49 16 36 H 0.09 1.69 8.14 -2.39 -0.02 1.68 16 37 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 38 H 0.11 1.34 8.14 -2.39 -0.02 1.32 16 39 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 40 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 Total: -1.00 -75.67 327.59 0.98 -74.69 By element: Atomic # 1 Polarization: 8.13 SS G_CDS: 1.03 Total: 9.16 kcal Atomic # 6 Polarization: -30.10 SS G_CDS: 4.52 Total: -25.58 kcal Atomic # 7 Polarization: -105.39 SS G_CDS: -5.28 Total: -110.67 kcal Atomic # 14 Polarization: 46.21 SS G_CDS: 2.03 Total: 48.23 kcal Atomic # 16 Polarization: 5.48 SS G_CDS: -1.31 Total: 4.17 kcal Total: -75.67 0.98 -74.69 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611410766.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.638 kcal (2) G-P(sol) polarization free energy of solvation -75.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.694 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.31 seconds