Wall clock time and date at job start Tue Mar 31 2020 01:47:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53002 * 109.46993 * 2 1 4 4 H 1.08991 * 109.47178 * 55.09174 * 3 2 1 5 5 C 1.50699 * 109.46746 * 175.09716 * 3 2 1 6 6 H 1.08005 * 119.99634 * 119.99799 * 5 3 2 7 7 C 1.37876 * 120.00262 * 299.99454 * 5 3 2 8 8 N 1.31510 * 119.99880 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 120.00143 * 180.02562 * 7 5 3 10 10 H 1.48506 * 109.47116 * 89.99906 * 9 7 5 11 11 H 1.48497 * 109.47238 * 209.99896 * 9 7 5 12 12 H 1.48504 * 109.47190 * 330.00168 * 9 7 5 13 13 N 1.46902 * 109.46931 * 295.09387 * 3 2 1 14 14 C 1.46903 * 111.00123 * 154.21065 * 13 3 2 15 15 C 1.50695 * 109.47226 * 185.22023 * 14 13 3 16 16 N 1.28665 * 124.93230 * 90.02136 * 15 14 13 17 17 C 1.32522 * 117.87972 * 179.97438 * 16 15 14 18 18 C 1.34614 * 113.15771 * 0.02588 * 17 16 15 19 19 S 1.70917 * 124.92588 * 269.99976 * 15 14 13 20 20 C 1.50998 * 125.22533 * 179.70377 * 18 17 16 21 21 C 1.53143 * 108.65486 * 344.37090 * 20 18 17 22 22 C 1.53143 * 109.12628 * 48.95037 * 21 20 18 23 23 C 1.52129 * 124.20265 * 180.02562 * 17 16 15 24 24 H 1.09001 * 109.46908 * 180.24455 * 1 2 3 25 25 H 1.08998 * 109.47337 * 300.24628 * 1 2 3 26 26 H 1.08993 * 109.46704 * 60.25252 * 1 2 3 27 27 H 1.08998 * 109.47409 * 239.99553 * 2 1 3 28 28 H 1.09006 * 109.46607 * 119.99676 * 2 1 3 29 29 H 0.96994 * 120.00280 * 180.02562 * 8 7 5 30 30 H 1.00896 * 111.00349 * 278.17052 * 13 3 2 31 31 H 1.08998 * 109.46884 * 65.21472 * 14 13 3 32 32 H 1.09004 * 109.47014 * 305.21795 * 14 13 3 33 33 H 1.09000 * 109.61699 * 103.97819 * 20 18 17 34 34 H 1.08997 * 109.62013 * 224.51656 * 20 18 17 35 35 H 1.09004 * 109.36404 * 289.12208 * 21 20 18 36 36 H 1.09002 * 109.60098 * 168.91512 * 21 20 18 37 37 H 1.09003 * 109.47227 * 169.76589 * 22 21 20 38 38 H 1.08991 * 109.47712 * 49.75254 * 22 21 20 39 39 H 1.08995 * 109.59391 * 282.23314 * 23 17 16 40 40 H 1.08999 * 109.59400 * 42.53034 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6067 1.9811 0.8427 5 6 3.5421 1.4442 0.1214 6 1 4.1462 1.8892 -0.6555 7 6 4.1453 0.8778 1.2243 8 7 3.4098 0.3355 2.1701 9 14 6.0072 0.8805 1.3751 10 1 6.4450 2.1131 2.0782 11 1 6.4430 -0.3109 2.1470 12 1 6.6136 0.8415 0.0201 13 7 1.6494 2.0999 -1.2543 14 6 1.5526 3.5551 -1.0780 15 6 1.0278 4.1807 -2.3446 16 7 -0.2160 4.3782 -2.6082 17 6 -0.5217 4.9414 -3.7682 18 6 0.5586 5.2292 -4.5180 19 16 1.9985 4.7314 -3.6391 20 6 0.5243 5.8670 -5.8863 21 6 -0.9019 5.7709 -6.4359 22 6 -1.8852 6.2581 -5.3677 23 6 -1.9414 5.2410 -4.2256 24 1 -0.3633 -1.0277 0.0044 25 1 -0.3634 0.5176 0.8877 26 1 -0.3632 0.5099 -0.8922 27 1 1.8935 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 3.8340 -0.0626 2.9462 30 1 2.2895 1.8677 -1.9989 31 1 2.5394 3.9604 -0.8544 32 1 0.8736 3.7770 -0.2548 33 1 0.8143 6.9149 -5.8089 34 1 1.2103 5.3429 -6.5516 35 1 -1.1225 4.7338 -6.6891 36 1 -0.9932 6.3926 -7.3265 37 1 -2.8765 6.3650 -5.8082 38 1 -1.5536 7.2216 -4.9809 39 1 -2.4139 4.3233 -4.5757 40 1 -2.5139 5.6527 -3.3945 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000613044464.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:47:01 Heat of formation + Delta-G solvation = 16.356178 kcal Electronic energy + Delta-G solvation = -19467.024990 eV Core-core repulsion = 16600.131387 eV Total energy + Delta-G solvation = -2866.893603 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 280.130 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.95982 -36.85843 -35.87680 -32.73416 -31.29345 -30.97062 -29.35291 -27.04143 -25.21643 -23.81298 -22.87349 -22.17601 -20.81769 -19.53122 -18.29013 -17.79848 -16.67104 -15.36138 -14.89366 -14.83919 -14.51822 -14.26277 -14.00943 -13.66565 -13.42936 -13.10423 -12.86874 -12.58345 -12.18700 -11.83636 -11.77760 -11.66274 -11.22654 -11.15080 -11.06814 -11.01286 -10.84097 -10.68101 -10.51401 -10.19051 -9.65158 -9.57768 -9.18367 -9.10919 -8.95632 -8.41307 -8.34678 -7.35825 -6.03274 -4.16893 0.96025 1.58756 2.02669 3.02680 3.24997 3.32693 3.35149 4.18751 4.36823 4.61049 4.67312 4.77220 5.05402 5.10234 5.22883 5.34189 5.43180 5.43304 5.56692 5.63721 5.71105 5.78855 5.84065 5.97248 6.09743 6.18414 6.25132 6.43283 6.47453 6.55191 6.74502 7.10512 7.21541 7.39192 7.55414 7.74522 8.01878 8.06767 8.09821 8.25581 8.55945 8.94096 9.51068 10.97103 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.027140 B = 0.004034 C = 0.003644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1031.435980 B = 6939.324304 C = 7681.513344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.104 4.104 3 C 0.217 3.783 4 H 0.036 0.964 5 C -0.550 4.550 6 H 0.054 0.946 7 C 0.069 3.931 8 N -0.883 5.883 9 Si 0.889 3.111 10 H -0.281 1.281 11 H -0.285 1.285 12 H -0.275 1.275 13 N -0.678 5.678 14 C 0.138 3.862 15 C 0.088 3.912 16 N -0.467 5.467 17 C 0.068 3.932 18 C -0.243 4.243 19 S 0.099 5.901 20 C -0.037 4.037 21 C -0.116 4.116 22 C -0.118 4.118 23 C -0.039 4.039 24 H 0.024 0.976 25 H 0.037 0.963 26 H 0.049 0.951 27 H 0.030 0.970 28 H 0.092 0.908 29 H 0.262 0.738 30 H 0.329 0.671 31 H 0.052 0.948 32 H 0.093 0.907 33 H 0.076 0.924 34 H 0.075 0.925 35 H 0.067 0.933 36 H 0.070 0.930 37 H 0.071 0.929 38 H 0.066 0.934 39 H 0.080 0.920 40 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.127 10.826 -14.487 19.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.143 4.143 3 C 0.109 3.891 4 H 0.054 0.946 5 C -0.589 4.589 6 H 0.072 0.928 7 C -0.134 4.134 8 N -0.521 5.521 9 Si 0.717 3.283 10 H -0.207 1.207 11 H -0.211 1.211 12 H -0.200 1.200 13 N -0.308 5.308 14 C 0.005 3.995 15 C -0.192 4.192 16 N -0.181 5.181 17 C -0.064 4.064 18 C -0.364 4.364 19 S 0.356 5.644 20 C -0.076 4.076 21 C -0.155 4.155 22 C -0.156 4.156 23 C -0.078 4.078 24 H 0.043 0.957 25 H 0.056 0.944 26 H 0.068 0.932 27 H 0.049 0.951 28 H 0.110 0.890 29 H 0.072 0.928 30 H 0.145 0.855 31 H 0.070 0.930 32 H 0.111 0.889 33 H 0.094 0.906 34 H 0.094 0.906 35 H 0.086 0.914 36 H 0.089 0.911 37 H 0.090 0.910 38 H 0.084 0.916 39 H 0.098 0.902 40 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -7.055 10.463 -13.940 18.803 hybrid contribution 1.297 0.275 0.065 1.327 sum -5.758 10.738 -13.875 18.465 Atomic orbital electron populations 1.21705 0.98865 0.98366 1.00595 1.21487 0.92217 0.98873 1.01715 1.19192 0.92934 0.91388 0.85541 0.94638 1.21844 0.92557 1.38726 1.05795 0.92787 1.24918 0.98007 0.94819 0.95623 1.69873 1.34921 1.37894 1.09365 0.86645 0.85915 0.77594 0.78146 1.20702 1.21110 1.19953 1.60878 1.55399 1.03960 1.10608 1.20421 0.99029 0.90504 0.89525 1.27162 0.90475 1.00653 1.00910 1.65838 1.18265 1.15187 1.18794 1.20880 0.96570 0.99482 0.89423 1.25885 0.95049 1.12231 1.03239 1.83917 1.11542 1.56143 1.12785 1.20065 0.98005 0.99729 0.89826 1.21581 0.93810 1.02102 0.97959 1.21563 0.99632 0.98778 0.95630 1.20324 0.89969 0.99591 0.97960 0.95671 0.94422 0.93214 0.95080 0.89017 0.92780 0.85515 0.92973 0.88931 0.90578 0.90624 0.91382 0.91086 0.90992 0.91573 0.90151 0.90027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.94 9.80 37.16 0.36 -2.57 16 2 C -0.10 -2.51 5.45 -26.73 -0.15 -2.66 16 3 C 0.22 5.31 1.98 -68.86 -0.14 5.18 16 4 H 0.04 0.96 7.70 -51.93 -0.40 0.56 16 5 C -0.55 -14.51 8.47 -34.44 -0.29 -14.80 16 6 H 0.05 1.41 7.73 -52.48 -0.41 1.00 16 7 C 0.07 1.86 5.29 -17.82 -0.09 1.77 16 8 N -0.88 -24.58 11.29 55.43 0.63 -23.96 16 9 Si 0.89 20.79 29.54 -169.99 -5.02 15.77 16 10 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 11 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 12 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 13 N -0.68 -14.42 5.66 -109.22 -0.62 -15.04 16 14 C 0.14 2.67 6.09 -4.98 -0.03 2.64 16 15 C 0.09 1.55 6.94 -13.61 -0.09 1.46 16 16 N -0.47 -8.37 10.51 -7.33 -0.08 -8.45 16 17 C 0.07 1.02 6.78 -82.87 -0.56 0.46 16 18 C -0.24 -3.30 6.39 -35.44 -0.23 -3.53 16 19 S 0.10 1.46 23.17 -107.50 -2.49 -1.03 16 20 C -0.04 -0.36 6.28 -27.66 -0.17 -0.53 16 21 C -0.12 -0.95 5.94 -26.58 -0.16 -1.10 16 22 C -0.12 -1.00 5.87 -26.63 -0.16 -1.16 16 23 C -0.04 -0.44 6.29 -27.15 -0.17 -0.61 16 24 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 25 H 0.04 0.80 8.14 -51.93 -0.42 0.37 16 26 H 0.05 1.05 7.76 -51.93 -0.40 0.64 16 27 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 28 H 0.09 2.44 5.95 -51.93 -0.31 2.13 16 29 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 30 H 0.33 6.92 8.45 -39.29 -0.33 6.59 16 31 H 0.05 1.01 8.11 -51.93 -0.42 0.59 16 32 H 0.09 1.84 7.92 -51.93 -0.41 1.43 16 33 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 35 H 0.07 0.59 8.11 -51.93 -0.42 0.17 16 36 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.07 0.56 8.11 -51.93 -0.42 0.14 16 39 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 40 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 LS Contribution 334.48 15.07 5.04 5.04 Total: -1.00 -28.44 334.48 -10.88 -39.32 By element: Atomic # 1 Polarization: 10.25 SS G_CDS: -6.46 Total: 3.79 kcal Atomic # 6 Polarization: -13.57 SS G_CDS: -1.88 Total: -15.45 kcal Atomic # 7 Polarization: -47.38 SS G_CDS: -0.07 Total: -47.44 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Atomic # 16 Polarization: 1.46 SS G_CDS: -2.49 Total: -1.03 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -28.44 -10.88 -39.32 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000613044464.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.678 kcal (2) G-P(sol) polarization free energy of solvation -28.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.322 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds