Wall clock time and date at job start Tue Mar 31 2020 02:20:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35898 * 116.99762 * 2 1 4 4 C 1.38785 * 120.00402 * 0.02562 * 3 2 1 5 5 C 1.38405 * 120.07956 * 180.02562 * 4 3 2 6 6 F 1.35099 * 119.95655 * 180.02562 * 5 4 3 7 7 C 1.38364 * 120.08414 * 0.02562 * 5 4 3 8 8 C 1.38941 * 120.00454 * 0.02562 * 7 5 4 9 9 N 1.39598 * 120.03759 * 180.02562 * 8 7 5 10 10 N 1.40096 * 120.00213 * 359.97438 * 9 8 7 11 11 C 1.28017 * 120.00182 * 179.97438 * 10 9 8 12 12 C 1.50703 * 120.00114 * 179.97438 * 11 10 9 13 13 H 1.08996 * 109.46961 * 0.02562 * 12 11 10 14 14 C 1.53001 * 109.47021 * 120.00730 * 12 11 10 15 15 C 1.53003 * 109.47288 * 240.00201 * 12 11 10 16 16 C 1.50697 * 109.47125 * 174.99547 * 15 12 11 17 17 H 1.08000 * 120.00199 * 0.02562 * 16 15 12 18 18 C 1.37872 * 119.99940 * 179.97438 * 16 15 12 19 19 N 1.31510 * 120.00467 * 0.02562 * 18 16 15 20 20 Si 1.86807 * 120.00052 * 180.02562 * 18 16 15 21 21 H 1.48495 * 109.46887 * 60.00476 * 20 18 16 22 22 H 1.48498 * 109.47256 * 180.02562 * 20 18 16 23 23 H 1.48497 * 109.47041 * 300.00257 * 20 18 16 24 24 C 1.38573 * 120.00427 * 180.02562 * 3 2 1 25 25 H 1.08997 * 109.47677 * 59.99593 * 1 2 3 26 26 H 1.09001 * 109.47105 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47101 * 299.99378 * 1 2 3 28 28 H 1.08001 * 119.96029 * 359.75029 * 4 3 2 29 29 H 1.08006 * 119.99618 * 180.02562 * 7 5 4 30 30 H 0.97003 * 119.99675 * 179.97438 * 9 8 7 31 31 H 1.08005 * 120.00056 * 0.02562 * 11 10 9 32 32 H 1.09001 * 109.47139 * 180.02562 * 14 12 11 33 33 H 1.09006 * 109.46557 * 299.99792 * 14 12 11 34 34 H 1.08996 * 109.47432 * 60.00069 * 14 12 11 35 35 H 1.08996 * 109.47469 * 295.00329 * 15 12 11 36 36 H 1.09007 * 109.47033 * 55.00281 * 15 12 11 37 37 H 0.96998 * 120.00551 * 179.97438 * 19 18 16 38 38 H 1.08003 * 120.03769 * 359.96243 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2901 2.3749 0.0005 5 6 1.9168 3.6089 0.0000 6 9 1.1786 4.7404 0.0011 7 6 3.2983 3.6852 -0.0016 8 6 4.0584 2.5222 -0.0032 9 7 5.4523 2.5984 -0.0043 10 7 6.0856 3.8480 -0.0043 11 6 7.3638 3.9179 -0.0048 12 6 8.0450 5.2622 -0.0054 13 1 7.2926 6.0508 -0.0048 14 6 8.9195 5.3913 1.2434 15 6 8.9184 5.3909 -1.2550 16 6 9.5023 6.7787 -1.3191 17 1 9.2737 7.4970 -0.5456 18 6 10.3292 7.1311 -2.3645 19 7 10.6081 6.2564 -3.3061 20 14 11.0536 8.8512 -2.4435 21 1 11.8799 9.0963 -1.2343 22 1 11.9012 8.9761 -3.6564 23 1 9.9550 9.8486 -2.5030 24 6 3.4298 1.2836 -0.0005 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8900 28 1 0.2116 2.3176 -0.0031 29 1 3.7859 4.6490 -0.0016 30 1 5.9824 1.7860 -0.0051 31 1 7.9541 3.0134 -0.0056 32 1 9.4119 6.3638 1.2433 33 1 8.2973 5.2997 2.1337 34 1 9.6720 4.6028 1.2432 35 1 9.7249 4.6590 -1.2116 36 1 8.3117 5.2107 -2.1425 37 1 11.1895 6.5044 -4.0418 38 1 4.0187 0.3782 -0.0003 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000766025871.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:20:34 Heat of formation + Delta-G solvation = -46.833579 kcal Electronic energy + Delta-G solvation = -20441.163213 eV Core-core repulsion = 17005.316320 eV Total energy + Delta-G solvation = -3435.846893 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.133 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -49.99382 -41.13642 -39.38473 -38.08698 -36.33718 -34.42033 -32.82844 -31.31034 -29.54394 -28.78433 -27.98458 -25.86520 -24.08755 -23.56769 -22.44026 -20.70741 -19.61547 -18.89930 -18.14830 -17.54616 -17.22967 -16.95757 -16.86658 -16.46777 -16.35379 -16.32763 -15.41121 -15.01250 -14.87473 -14.81797 -14.26603 -13.95106 -13.58084 -13.27108 -13.14671 -12.82806 -12.77345 -12.75066 -12.46727 -12.26738 -12.24169 -12.04461 -11.72991 -11.31832 -11.26537 -10.94010 -10.57930 -10.49681 -9.39849 -8.65150 -8.14967 -6.23738 0.10527 0.25989 1.27745 1.44462 1.46711 1.48606 1.54283 2.36597 2.45913 2.60279 3.13673 3.19587 3.77681 3.95525 3.99235 4.02984 4.13803 4.25908 4.40142 4.42870 4.45125 4.59610 4.64898 4.77087 4.82041 5.02874 5.05750 5.13385 5.20997 5.27485 5.43128 5.49304 5.52503 5.56147 5.78732 5.88356 6.11757 6.28391 6.33687 6.91155 7.23726 7.44526 8.96663 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.028311 B = 0.002819 C = 0.002728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.781034 B = 9931.210451 C =10259.814529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.320 6.320 3 C 0.197 3.803 4 C -0.289 4.289 5 C 0.164 3.836 6 F -0.141 7.141 7 C -0.255 4.255 8 C 0.282 3.718 9 N -0.585 5.585 10 N -0.282 5.282 11 C 0.099 3.901 12 C -0.029 4.029 13 H 0.065 0.935 14 C -0.121 4.121 15 C 0.040 3.960 16 C -0.528 4.528 17 H 0.066 0.934 18 C 0.000 4.000 19 N -0.935 5.935 20 Si 0.959 3.041 21 H -0.263 1.263 22 H -0.288 1.288 23 H -0.271 1.271 24 C -0.233 4.233 25 H 0.066 0.934 26 H 0.125 0.875 27 H 0.068 0.932 28 H 0.161 0.839 29 H 0.127 0.873 30 H 0.401 0.599 31 H 0.124 0.876 32 H 0.059 0.941 33 H 0.060 0.940 34 H 0.059 0.941 35 H 0.007 0.993 36 H -0.016 1.016 37 H 0.262 0.738 38 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.825 -12.801 9.126 23.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.233 6.233 3 C 0.149 3.851 4 C -0.310 4.310 5 C 0.144 3.856 6 F -0.120 7.120 7 C -0.278 4.278 8 C 0.179 3.821 9 N -0.305 5.305 10 N -0.085 5.085 11 C -0.115 4.115 12 C -0.051 4.051 13 H 0.083 0.917 14 C -0.179 4.179 15 C 0.002 3.998 16 C -0.566 4.566 17 H 0.084 0.916 18 C -0.197 4.197 19 N -0.575 5.575 20 Si 0.784 3.216 21 H -0.188 1.188 22 H -0.214 1.214 23 H -0.196 1.196 24 C -0.257 4.257 25 H 0.084 0.916 26 H 0.143 0.857 27 H 0.086 0.914 28 H 0.178 0.822 29 H 0.145 0.855 30 H 0.242 0.758 31 H 0.141 0.859 32 H 0.078 0.922 33 H 0.079 0.921 34 H 0.078 0.922 35 H 0.025 0.975 36 H 0.003 0.997 37 H 0.070 0.930 38 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -18.550 -12.436 8.980 24.071 hybrid contribution 1.122 0.371 -0.598 1.325 sum -17.428 -12.065 8.382 22.794 Atomic orbital electron populations 1.23449 0.75902 1.05999 1.02605 1.86078 1.23863 1.25488 1.87892 1.18149 0.90978 0.84158 0.91774 1.21066 1.02007 0.90066 1.17830 1.17136 0.88161 0.81952 0.98341 1.91481 1.76886 1.50028 1.93605 1.20546 0.92162 0.99540 1.15586 1.16813 0.81349 0.92582 0.91355 1.45446 1.03239 1.03702 1.78135 1.73997 1.13206 1.06421 1.14830 1.26279 0.90552 1.00987 0.93714 1.20050 0.96566 0.90754 0.97687 0.91695 1.21598 0.98820 1.02726 0.94793 1.18957 0.93376 0.96195 0.91296 1.21576 1.28112 0.98703 1.08247 0.91563 1.25892 0.97184 1.01219 0.95417 1.70079 1.38034 1.36627 1.12791 0.85593 0.78460 0.79905 0.77670 1.18817 1.21352 1.19639 1.19791 0.92474 0.96467 1.16965 0.91579 0.85708 0.91385 0.82167 0.85476 0.75833 0.85868 0.92155 0.92066 0.92241 0.97500 0.99740 0.92961 0.82896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.14 9.81 113.37 1.11 1.25 16 2 O -0.32 -5.78 10.49 -92.40 -0.97 -6.74 16 3 C 0.20 4.23 6.68 22.48 0.15 4.38 16 4 C -0.29 -6.23 9.01 22.44 0.20 -6.03 16 5 C 0.16 4.41 7.29 22.34 0.16 4.58 16 6 F -0.14 -3.93 17.26 44.97 0.78 -3.15 16 7 C -0.26 -7.71 9.48 22.47 0.21 -7.50 16 8 C 0.28 7.79 6.72 38.23 0.26 8.05 16 9 N -0.59 -16.38 6.44 -51.40 -0.33 -16.71 16 10 N -0.28 -9.52 10.21 -50.45 -0.52 -10.03 16 11 C 0.10 3.28 9.66 88.67 0.86 4.14 16 12 C -0.03 -1.14 2.75 -11.54 -0.03 -1.17 16 13 H 0.06 2.66 8.11 -2.39 -0.02 2.64 16 14 C -0.12 -4.00 8.98 71.98 0.65 -3.35 16 15 C 0.04 1.99 4.43 29.85 0.13 2.12 16 16 C -0.53 -28.56 8.41 25.60 0.22 -28.34 16 17 H 0.07 3.40 7.06 -2.91 -0.02 3.38 16 18 C 0.00 0.02 5.46 84.65 0.46 0.49 16 19 N -0.93 -55.77 13.29 21.44 0.28 -55.49 16 20 Si 0.96 43.42 29.54 68.60 2.03 45.45 16 21 H -0.26 -11.31 7.11 99.48 0.71 -10.61 16 22 H -0.29 -12.93 7.11 99.48 0.71 -12.23 16 23 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 24 C -0.23 -5.33 9.83 22.51 0.22 -5.11 16 25 H 0.07 0.56 7.66 -2.39 -0.02 0.54 16 26 H 0.12 0.61 8.14 -2.39 -0.02 0.59 16 27 H 0.07 0.54 7.66 -2.39 -0.02 0.52 16 28 H 0.16 2.56 6.29 -2.91 -0.02 2.54 16 29 H 0.13 4.33 7.35 -2.91 -0.02 4.30 16 30 H 0.40 8.89 8.64 -213.32 -1.84 7.05 16 31 H 0.12 3.45 8.00 -2.91 -0.02 3.42 16 32 H 0.06 2.14 6.95 -2.39 -0.02 2.12 16 33 H 0.06 1.71 8.14 -2.38 -0.02 1.69 16 34 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 35 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 36 H -0.02 -0.88 8.14 -2.38 -0.02 -0.90 16 37 H 0.26 14.82 8.31 -92.71 -0.77 14.05 16 38 H 0.15 2.85 8.06 -2.91 -0.02 2.82 16 Total: -1.00 -65.47 331.86 5.10 -60.37 By element: Atomic # 1 Polarization: 13.57 SS G_CDS: -0.77 Total: 12.80 kcal Atomic # 6 Polarization: -31.10 SS G_CDS: 4.60 Total: -26.50 kcal Atomic # 7 Polarization: -81.67 SS G_CDS: -0.56 Total: -82.23 kcal Atomic # 8 Polarization: -5.78 SS G_CDS: -0.97 Total: -6.74 kcal Atomic # 9 Polarization: -3.93 SS G_CDS: 0.78 Total: -3.15 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 2.03 Total: 45.45 kcal Total: -65.47 5.10 -60.37 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000766025871.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.540 kcal (2) G-P(sol) polarization free energy of solvation -65.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds