Wall clock time and date at job start Tue Mar 31 2020 02:56:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46907 * 110.99684 * 2 1 4 4 C 1.40058 * 111.00194 * 236.04768 * 2 1 3 5 5 C 1.38811 * 120.01096 * 59.72498 * 4 2 1 6 6 C 1.38107 * 120.01799 * 179.70035 * 5 4 2 7 7 C 1.38853 * 120.04369 * 0.59621 * 6 5 4 8 8 N 1.40135 * 119.99229 * 179.70299 * 7 6 5 9 9 C 1.34778 * 119.99636 * 213.28584 * 8 7 6 10 10 O 1.21299 * 120.00368 * 5.27149 * 9 8 7 11 11 C 1.50705 * 119.99607 * 185.27244 * 9 8 7 12 12 C 1.53001 * 109.46919 * 179.97438 * 11 9 8 13 13 C 1.50702 * 109.47355 * 180.02562 * 12 11 9 14 14 H 1.08006 * 119.99570 * 359.97438 * 13 12 11 15 15 C 1.37872 * 120.00425 * 179.97438 * 13 12 11 16 16 N 1.31516 * 119.99632 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 120.00270 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.47057 * 59.99989 * 17 15 13 19 19 H 1.48502 * 109.47201 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.47277 * 300.00287 * 17 15 13 21 21 C 1.38852 * 120.01634 * 359.68005 * 7 6 5 22 22 C 1.38239 * 119.98107 * 0.02562 * 21 7 6 23 23 F 1.35094 * 120.01639 * 179.97438 * 22 21 7 24 24 H 1.09004 * 109.46775 * 183.95460 * 1 2 3 25 25 H 1.08997 * 109.47196 * 63.95669 * 1 2 3 26 26 H 1.08996 * 109.46957 * 303.95169 * 1 2 3 27 27 H 1.08993 * 109.47075 * 56.04649 * 3 2 1 28 28 H 1.09003 * 109.46681 * 176.04576 * 3 2 1 29 29 H 1.08993 * 109.47061 * 296.04257 * 3 2 1 30 30 H 1.07998 * 119.98778 * 359.97438 * 5 4 2 31 31 H 1.07997 * 119.98289 * 180.29642 * 6 5 4 32 32 H 0.96994 * 120.00472 * 33.28282 * 8 7 6 33 33 H 1.09001 * 109.47334 * 299.99714 * 11 9 8 34 34 H 1.09000 * 109.47066 * 60.00228 * 11 9 8 35 35 H 1.09006 * 109.47365 * 299.99856 * 12 11 9 36 36 H 1.09000 * 109.47582 * 59.99707 * 12 11 9 37 37 H 0.97001 * 119.99613 * 180.02562 * 16 15 13 38 38 H 1.07995 * 120.01041 * 180.02562 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9710 -0.7303 -1.0846 5 6 1.6541 -0.3525 -2.3822 6 6 2.1540 -1.0688 -3.4519 7 6 2.9639 -2.1747 -3.2305 8 7 3.4655 -2.9044 -4.3166 9 6 3.6441 -4.2359 -4.2089 10 8 3.2823 -4.8175 -3.2077 11 6 4.2935 -5.0023 -5.3323 12 6 4.3758 -6.4836 -4.9583 13 6 5.0258 -7.2500 -6.0814 14 1 5.3475 -6.7323 -6.9730 15 6 5.2096 -8.6119 -5.9708 16 7 4.8173 -9.2424 -4.8853 17 14 6.0146 -9.5619 -7.3632 18 1 7.3823 -9.0331 -7.5974 19 1 6.0957 -10.9995 -6.9997 20 1 5.2062 -9.4083 -8.5995 21 6 3.2772 -2.5575 -1.9331 22 6 2.7823 -1.8375 -0.8618 23 9 3.0863 -2.2096 0.4008 24 1 -0.3633 -1.0253 0.0709 25 1 -0.3633 0.4512 -0.9233 26 1 -0.3633 0.5739 0.8524 27 1 1.5897 1.9164 0.8524 28 1 3.0827 1.3433 0.0709 29 1 1.7044 1.8724 -0.9233 30 1 1.0200 0.5045 -2.5553 31 1 1.9110 -0.7715 -4.4614 32 1 3.6840 -2.4513 -5.1459 33 1 3.7006 -4.8888 -6.2399 34 1 5.2978 -4.6149 -5.5035 35 1 4.9690 -6.5969 -4.0508 36 1 3.3717 -6.8715 -4.7867 37 1 4.9471 -10.2005 -4.8073 38 1 3.9075 -3.4174 -1.7609 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000830780014.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:56:40 Heat of formation + Delta-G solvation = -50.926814 kcal Electronic energy + Delta-G solvation = -21066.088538 eV Core-core repulsion = 17630.064149 eV Total energy + Delta-G solvation = -3436.024389 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.133 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -48.69322 -40.45518 -39.11925 -36.80293 -34.03174 -33.55378 -31.17717 -30.68269 -29.00201 -27.86603 -25.99788 -24.52511 -22.97850 -22.15885 -21.01220 -19.86768 -18.13353 -17.22763 -16.87376 -16.40545 -15.81953 -15.61032 -15.54793 -15.01000 -14.79874 -14.59119 -14.46965 -14.09026 -13.55643 -13.30372 -12.94903 -12.75192 -12.61154 -12.22310 -12.19127 -12.05135 -11.95830 -11.56492 -11.23497 -10.95246 -10.66758 -10.19766 -10.04206 -9.77584 -9.35583 -9.15213 -8.85149 -8.80219 -8.37028 -8.09992 -6.00395 -4.05597 0.96928 1.11191 2.89798 3.14632 3.31857 3.37100 3.38511 3.53062 3.57513 4.27863 4.43890 4.61450 4.83234 4.94059 5.01117 5.10814 5.15035 5.20922 5.34634 5.38844 5.51693 5.56278 5.60122 5.67859 5.86240 6.04622 6.07941 6.08090 6.17175 6.40057 6.58077 6.74618 6.75940 7.13819 7.54204 7.67885 7.77150 8.00313 8.29592 8.48171 9.01984 9.58393 11.10445 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.043227 B = 0.002996 C = 0.002885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 647.589520 B = 9343.810838 C = 9704.196536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.504 5.504 3 C 0.029 3.971 4 C 0.020 3.980 5 C -0.100 4.100 6 C -0.156 4.156 7 C 0.191 3.809 8 N -0.686 5.686 9 C 0.508 3.492 10 O -0.508 6.508 11 C -0.128 4.128 12 C 0.036 3.964 13 C -0.530 4.530 14 H 0.056 0.944 15 C 0.059 3.941 16 N -0.889 5.889 17 Si 0.894 3.106 18 H -0.277 1.277 19 H -0.287 1.287 20 H -0.277 1.277 21 C -0.159 4.159 22 C 0.148 3.852 23 F -0.125 7.125 24 H 0.071 0.929 25 H 0.031 0.969 26 H 0.073 0.927 27 H 0.072 0.928 28 H 0.070 0.930 29 H 0.030 0.970 30 H 0.129 0.871 31 H 0.132 0.868 32 H 0.412 0.588 33 H 0.084 0.916 34 H 0.086 0.914 35 H 0.025 0.975 36 H 0.025 0.975 37 H 0.262 0.738 38 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.572 22.940 4.566 24.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 N -0.225 5.225 3 C -0.117 4.117 4 C -0.076 4.076 5 C -0.120 4.120 6 C -0.177 4.177 7 C 0.095 3.905 8 N -0.332 5.332 9 C 0.298 3.702 10 O -0.380 6.380 11 C -0.168 4.168 12 C -0.001 4.001 13 C -0.568 4.568 14 H 0.074 0.926 15 C -0.143 4.143 16 N -0.527 5.527 17 Si 0.722 3.278 18 H -0.202 1.202 19 H -0.212 1.212 20 H -0.202 1.202 21 C -0.180 4.180 22 C 0.127 3.873 23 F -0.104 7.104 24 H 0.090 0.910 25 H 0.050 0.950 26 H 0.091 0.909 27 H 0.091 0.909 28 H 0.089 0.911 29 H 0.049 0.951 30 H 0.147 0.853 31 H 0.149 0.851 32 H 0.248 0.752 33 H 0.103 0.897 34 H 0.104 0.896 35 H 0.043 0.957 36 H 0.043 0.957 37 H 0.072 0.928 38 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -6.637 22.008 5.842 23.717 hybrid contribution 0.256 -0.002 -1.681 1.700 sum -6.380 22.006 4.161 23.287 Atomic orbital electron populations 1.22469 0.85759 1.02933 1.00717 1.59550 1.08566 1.14076 1.40322 1.22458 1.01162 0.87408 1.00720 1.18662 1.02122 0.96939 0.89869 1.21151 0.99525 0.99730 0.91629 1.20792 0.99640 0.97631 0.99661 1.17560 0.93568 0.91919 0.87487 1.44074 1.65520 1.08691 1.14926 1.21948 0.77525 0.80428 0.90292 1.90715 1.47278 1.68059 1.31978 1.21929 0.99963 1.00049 0.94869 1.18927 0.98370 0.85744 0.97101 1.21145 1.40175 0.92839 1.02688 0.92579 1.25024 0.95662 0.97854 0.95792 1.69985 1.46585 1.09301 1.26823 0.86633 0.79888 0.78926 0.82371 1.20219 1.21250 1.20225 1.21154 1.03929 1.02579 0.90377 1.17282 0.97048 0.93602 0.79331 1.91503 1.91171 1.90603 1.37086 0.90986 0.95047 0.90861 0.90885 0.91117 0.95095 0.85277 0.85053 0.75192 0.89746 0.89603 0.95676 0.95685 0.92798 0.82943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 9.34 60.06 0.56 0.81 16 2 N -0.50 -5.50 4.83 -186.72 -0.90 -6.40 16 3 C 0.03 0.24 9.39 60.07 0.56 0.80 16 4 C 0.02 0.24 4.75 -83.58 -0.40 -0.16 16 5 C -0.10 -1.02 8.57 -39.42 -0.34 -1.36 16 6 C -0.16 -1.66 9.95 -39.40 -0.39 -2.05 16 7 C 0.19 2.59 6.28 -83.61 -0.53 2.07 16 8 N -0.69 -9.17 5.35 -9.82 -0.05 -9.22 16 9 C 0.51 9.21 7.57 -10.98 -0.08 9.13 16 10 O -0.51 -11.39 13.67 5.54 0.08 -11.32 16 11 C -0.13 -2.43 5.64 -27.88 -0.16 -2.59 16 12 C 0.04 0.94 4.26 -27.88 -0.12 0.82 16 13 C -0.53 -14.68 9.11 -34.44 -0.31 -15.00 16 14 H 0.06 1.45 7.74 -52.48 -0.41 1.05 16 15 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 16 N -0.89 -27.09 13.29 55.43 0.74 -26.35 16 17 Si 0.89 21.37 29.54 -169.99 -5.02 16.35 16 18 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 19 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 20 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 21 C -0.16 -2.48 8.63 -39.35 -0.34 -2.82 16 22 C 0.15 2.20 7.31 -39.28 -0.29 1.91 16 23 F -0.13 -2.01 17.07 2.25 0.04 -1.98 16 24 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 25 H 0.03 0.24 7.11 -51.93 -0.37 -0.13 16 26 H 0.07 0.51 8.12 -51.93 -0.42 0.09 16 27 H 0.07 0.49 8.12 -51.93 -0.42 0.06 16 28 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.03 0.22 7.36 -51.93 -0.38 -0.16 16 30 H 0.13 1.01 7.02 -52.49 -0.37 0.64 16 31 H 0.13 1.04 8.06 -52.49 -0.42 0.61 16 32 H 0.41 3.89 8.82 -40.82 -0.36 3.53 16 33 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 34 H 0.09 1.46 8.14 -51.93 -0.42 1.04 16 35 H 0.02 0.71 8.10 -51.93 -0.42 0.29 16 36 H 0.02 0.71 8.10 -51.93 -0.42 0.29 16 37 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 38 H 0.15 2.73 6.41 -52.49 -0.34 2.40 16 LS Contribution 327.15 15.07 4.93 4.93 Total: -1.00 -33.72 327.15 -7.27 -40.99 By element: Atomic # 1 Polarization: 4.99 SS G_CDS: -5.16 Total: -0.16 kcal Atomic # 6 Polarization: -4.92 SS G_CDS: -1.92 Total: -6.85 kcal Atomic # 7 Polarization: -41.75 SS G_CDS: -0.22 Total: -41.97 kcal Atomic # 8 Polarization: -11.39 SS G_CDS: 0.08 Total: -11.32 kcal Atomic # 9 Polarization: -2.01 SS G_CDS: 0.04 Total: -1.98 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -33.72 -7.27 -40.99 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000830780014.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.932 kcal (2) G-P(sol) polarization free energy of solvation -33.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.994 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds