Wall clock time and date at job start Tue Mar 31 2020 02:56:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46907 * 110.99684 * 2 1 4 4 C 1.40058 * 111.00194 * 236.04768 * 2 1 3 5 5 C 1.38811 * 120.01096 * 59.72498 * 4 2 1 6 6 C 1.38107 * 120.01799 * 179.70035 * 5 4 2 7 7 C 1.38853 * 120.04369 * 0.59621 * 6 5 4 8 8 N 1.40135 * 119.99229 * 179.70299 * 7 6 5 9 9 C 1.34778 * 119.99636 * 213.28584 * 8 7 6 10 10 O 1.21299 * 120.00368 * 5.27149 * 9 8 7 11 11 C 1.50705 * 119.99607 * 185.27244 * 9 8 7 12 12 C 1.53001 * 109.46919 * 179.97438 * 11 9 8 13 13 C 1.50702 * 109.47355 * 180.02562 * 12 11 9 14 14 H 1.08006 * 119.99570 * 359.97438 * 13 12 11 15 15 C 1.37872 * 120.00425 * 179.97438 * 13 12 11 16 16 N 1.31516 * 119.99632 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 120.00270 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.47057 * 59.99989 * 17 15 13 19 19 H 1.48502 * 109.47201 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.47277 * 300.00287 * 17 15 13 21 21 C 1.38852 * 120.01634 * 359.68005 * 7 6 5 22 22 C 1.38239 * 119.98107 * 0.02562 * 21 7 6 23 23 F 1.35094 * 120.01639 * 179.97438 * 22 21 7 24 24 H 1.09004 * 109.46775 * 183.95460 * 1 2 3 25 25 H 1.08997 * 109.47196 * 63.95669 * 1 2 3 26 26 H 1.08996 * 109.46957 * 303.95169 * 1 2 3 27 27 H 1.08993 * 109.47075 * 56.04649 * 3 2 1 28 28 H 1.09003 * 109.46681 * 176.04576 * 3 2 1 29 29 H 1.08993 * 109.47061 * 296.04257 * 3 2 1 30 30 H 1.07998 * 119.98778 * 359.97438 * 5 4 2 31 31 H 1.07997 * 119.98289 * 180.29642 * 6 5 4 32 32 H 0.96994 * 120.00472 * 33.28282 * 8 7 6 33 33 H 1.09001 * 109.47334 * 299.99714 * 11 9 8 34 34 H 1.09000 * 109.47066 * 60.00228 * 11 9 8 35 35 H 1.09006 * 109.47365 * 299.99856 * 12 11 9 36 36 H 1.09000 * 109.47582 * 59.99707 * 12 11 9 37 37 H 0.97001 * 119.99613 * 180.02562 * 16 15 13 38 38 H 1.07995 * 120.01041 * 180.02562 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9710 -0.7303 -1.0846 5 6 1.6541 -0.3525 -2.3822 6 6 2.1540 -1.0688 -3.4519 7 6 2.9639 -2.1747 -3.2305 8 7 3.4655 -2.9044 -4.3166 9 6 3.6441 -4.2359 -4.2089 10 8 3.2823 -4.8175 -3.2077 11 6 4.2935 -5.0023 -5.3323 12 6 4.3758 -6.4836 -4.9583 13 6 5.0258 -7.2500 -6.0814 14 1 5.3475 -6.7323 -6.9730 15 6 5.2096 -8.6119 -5.9708 16 7 4.8173 -9.2424 -4.8853 17 14 6.0146 -9.5619 -7.3632 18 1 7.3823 -9.0331 -7.5974 19 1 6.0957 -10.9995 -6.9997 20 1 5.2062 -9.4083 -8.5995 21 6 3.2772 -2.5575 -1.9331 22 6 2.7823 -1.8375 -0.8618 23 9 3.0863 -2.2096 0.4008 24 1 -0.3633 -1.0253 0.0709 25 1 -0.3633 0.4512 -0.9233 26 1 -0.3633 0.5739 0.8524 27 1 1.5897 1.9164 0.8524 28 1 3.0827 1.3433 0.0709 29 1 1.7044 1.8724 -0.9233 30 1 1.0200 0.5045 -2.5553 31 1 1.9110 -0.7715 -4.4614 32 1 3.6840 -2.4513 -5.1459 33 1 3.7006 -4.8888 -6.2399 34 1 5.2978 -4.6149 -5.5035 35 1 4.9690 -6.5969 -4.0508 36 1 3.3717 -6.8715 -4.7867 37 1 4.9471 -10.2005 -4.8073 38 1 3.9075 -3.4174 -1.7609 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000830780014.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:56:40 Heat of formation + Delta-G solvation = -74.433946 kcal Electronic energy + Delta-G solvation = -21067.107884 eV Core-core repulsion = 17630.064149 eV Total energy + Delta-G solvation = -3437.043734 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.133 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -49.86318 -41.64470 -40.22350 -37.84400 -35.59233 -35.22389 -33.04922 -31.69601 -30.12498 -28.50081 -27.76781 -25.63569 -23.99479 -23.75740 -22.15189 -21.30370 -19.28017 -18.88809 -17.91569 -17.72822 -17.18906 -16.78060 -16.72713 -16.45700 -16.39653 -15.66138 -15.37000 -15.18410 -15.05956 -14.49461 -14.28086 -13.98264 -13.73342 -13.51852 -13.28583 -13.15746 -12.93357 -12.77865 -12.64112 -12.53264 -12.48976 -11.92278 -11.66395 -11.35491 -11.32897 -10.84182 -10.56073 -9.90870 -9.53604 -9.15152 -8.18392 -6.32616 -0.05011 0.11423 1.42546 1.46842 1.54180 1.54566 1.96801 2.43322 2.51269 2.77988 3.15047 3.25061 3.69643 3.91037 4.04611 4.14290 4.24210 4.37254 4.40862 4.48609 4.53314 4.62257 4.66096 4.72092 4.91931 4.98341 4.99027 5.02080 5.14179 5.18036 5.30356 5.49414 5.61163 5.69640 5.84489 5.91983 6.15846 6.26608 6.41329 6.85854 7.15482 7.37996 8.94084 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.043227 B = 0.002996 C = 0.002885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 647.589520 B = 9343.810838 C = 9704.196536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.530 5.530 3 C 0.029 3.971 4 C 0.031 3.969 5 C -0.089 4.089 6 C -0.130 4.130 7 C 0.169 3.831 8 N -0.660 5.660 9 C 0.511 3.489 10 O -0.564 6.564 11 C -0.115 4.115 12 C 0.040 3.960 13 C -0.543 4.543 14 H 0.079 0.921 15 C -0.008 4.008 16 N -0.939 5.939 17 Si 0.974 3.026 18 H -0.262 1.262 19 H -0.290 1.290 20 H -0.261 1.261 21 C -0.181 4.181 22 C 0.115 3.885 23 F -0.144 7.144 24 H 0.054 0.946 25 H 0.051 0.949 26 H 0.090 0.910 27 H 0.089 0.911 28 H 0.059 0.941 29 H 0.050 0.950 30 H 0.169 0.831 31 H 0.173 0.827 32 H 0.435 0.565 33 H 0.115 0.885 34 H 0.112 0.888 35 H -0.019 1.019 36 H -0.017 1.017 37 H 0.262 0.738 38 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.279 26.202 1.747 27.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 N -0.252 5.252 3 C -0.117 4.117 4 C -0.065 4.065 5 C -0.110 4.110 6 C -0.151 4.151 7 C 0.074 3.926 8 N -0.308 5.308 9 C 0.301 3.699 10 O -0.441 6.441 11 C -0.155 4.155 12 C 0.002 3.998 13 C -0.581 4.581 14 H 0.097 0.903 15 C -0.205 4.205 16 N -0.579 5.579 17 Si 0.798 3.202 18 H -0.187 1.187 19 H -0.216 1.216 20 H -0.185 1.185 21 C -0.203 4.203 22 C 0.094 3.906 23 F -0.123 7.123 24 H 0.073 0.927 25 H 0.069 0.931 26 H 0.109 0.891 27 H 0.107 0.893 28 H 0.078 0.922 29 H 0.069 0.931 30 H 0.186 0.814 31 H 0.191 0.809 32 H 0.275 0.725 33 H 0.133 0.867 34 H 0.130 0.870 35 H 0.000 1.000 36 H 0.002 0.998 37 H 0.071 0.929 38 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -7.340 25.355 2.985 26.565 hybrid contribution 0.419 -0.902 -0.709 1.221 sum -6.922 24.453 2.276 25.516 Atomic orbital electron populations 1.22518 0.84311 1.02455 1.02571 1.59507 1.09941 1.15561 1.40169 1.22517 1.00582 0.86062 1.02504 1.18838 1.00480 0.95657 0.91487 1.21561 0.98922 1.00251 0.90237 1.21185 0.96867 0.95188 1.01831 1.17710 0.95239 0.93322 0.86329 1.43590 1.64352 1.06933 1.15879 1.21717 0.77062 0.81966 0.89122 1.90715 1.49854 1.69663 1.33853 1.21677 1.02323 0.95429 0.96064 1.18715 0.94979 0.90776 0.95329 1.21689 1.39488 0.93393 1.03498 0.90258 1.26150 0.96339 0.99405 0.98653 1.70178 1.48477 1.09595 1.29632 0.85373 0.79326 0.76738 0.78809 1.18677 1.21590 1.18530 1.21003 1.04815 1.02170 0.92268 1.17601 0.99133 0.95367 0.78466 1.91440 1.91629 1.91049 1.38152 0.92698 0.93062 0.89094 0.89253 0.92175 0.93107 0.81403 0.80911 0.72483 0.86677 0.86966 1.00016 0.99833 0.92902 0.86730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 9.34 127.69 1.19 1.61 16 2 N -0.53 -10.61 4.83 -744.64 -3.59 -14.21 16 3 C 0.03 0.40 9.39 127.69 1.20 1.60 16 4 C 0.03 0.72 4.75 38.16 0.18 0.90 16 5 C -0.09 -1.49 8.57 22.38 0.19 -1.29 16 6 C -0.13 -2.26 9.95 22.39 0.22 -2.03 16 7 C 0.17 4.43 6.28 38.11 0.24 4.67 16 8 N -0.66 -16.70 5.35 -303.35 -1.62 -18.32 16 9 C 0.51 18.87 7.57 87.66 0.66 19.53 16 10 O -0.56 -27.17 13.67 -3.09 -0.04 -27.21 16 11 C -0.12 -4.32 5.64 29.85 0.17 -4.15 16 12 C 0.04 2.16 4.26 29.85 0.13 2.29 16 13 C -0.54 -30.26 9.11 25.60 0.23 -30.02 16 14 H 0.08 3.96 7.74 -2.91 -0.02 3.93 16 15 C -0.01 -0.46 5.46 84.65 0.46 0.00 16 16 N -0.94 -59.59 13.29 21.45 0.28 -59.30 16 17 Si 0.97 43.85 29.54 68.60 2.03 45.88 16 18 H -0.26 -11.12 7.11 99.48 0.71 -10.41 16 19 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 20 H -0.26 -11.01 7.11 99.48 0.71 -10.30 16 21 C -0.18 -5.99 8.63 22.42 0.19 -5.80 16 22 C 0.12 3.57 7.31 22.47 0.16 3.73 16 23 F -0.14 -5.03 17.07 44.97 0.77 -4.26 16 24 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 25 H 0.05 0.56 7.11 -2.39 -0.02 0.54 16 26 H 0.09 1.02 8.12 -2.39 -0.02 1.00 16 27 H 0.09 0.92 8.12 -2.39 -0.02 0.90 16 28 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 29 H 0.05 0.49 7.36 -2.39 -0.02 0.48 16 30 H 0.17 1.57 7.02 -2.91 -0.02 1.55 16 31 H 0.17 1.63 8.06 -2.91 -0.02 1.60 16 32 H 0.43 6.73 8.82 -92.71 -0.82 5.91 16 33 H 0.12 3.61 8.14 -2.39 -0.02 3.59 16 34 H 0.11 3.61 8.14 -2.39 -0.02 3.59 16 35 H -0.02 -1.16 8.10 -2.38 -0.02 -1.18 16 36 H -0.02 -1.04 8.10 -2.39 -0.02 -1.06 16 37 H 0.26 15.67 8.31 -92.71 -0.77 14.90 16 38 H 0.11 4.63 6.41 -2.91 -0.02 4.61 16 Total: -1.00 -80.52 327.15 3.32 -77.21 By element: Atomic # 1 Polarization: 8.93 SS G_CDS: 0.26 Total: 9.18 kcal Atomic # 6 Polarization: -14.22 SS G_CDS: 5.24 Total: -8.98 kcal Atomic # 7 Polarization: -86.89 SS G_CDS: -4.93 Total: -91.82 kcal Atomic # 8 Polarization: -27.17 SS G_CDS: -0.04 Total: -27.21 kcal Atomic # 9 Polarization: -5.03 SS G_CDS: 0.77 Total: -4.26 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.88 kcal Total: -80.52 3.32 -77.21 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000830780014.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.772 kcal (2) G-P(sol) polarization free energy of solvation -80.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.206 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds