Wall clock time and date at job start Tue Mar 31 2020 02:45:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42903 * 109.46726 * 2 1 4 4 C 1.35847 * 116.99658 * 180.02562 * 3 2 1 5 5 C 1.38502 * 120.12411 * 359.72073 * 4 3 2 6 6 C 1.38257 * 120.14855 * 179.74562 * 5 4 3 7 7 C 1.38379 * 120.39206 * 0.55819 * 6 5 4 8 8 C 1.38174 * 120.24527 * 359.69977 * 7 6 5 9 9 F 1.35102 * 120.07936 * 179.97438 * 8 7 6 10 10 C 1.39834 * 119.84850 * 0.02562 * 8 7 6 11 11 C 1.47411 * 120.19949 * 180.02562 * 10 8 7 12 12 N 1.29763 * 119.99781 * 359.97438 * 11 10 8 13 13 N 1.40097 * 119.99814 * 180.02562 * 12 11 10 14 14 C 1.46506 * 119.99965 * 179.97438 * 13 12 11 15 15 H 1.08997 * 109.46750 * 329.99452 * 14 13 12 16 16 C 1.52999 * 109.47026 * 89.99281 * 14 13 12 17 17 C 1.50694 * 109.47308 * 209.99698 * 14 13 12 18 18 H 1.08004 * 119.99928 * 359.97438 * 17 14 13 19 19 C 1.37879 * 120.00470 * 179.97438 * 17 14 13 20 20 N 1.31513 * 119.99551 * 359.97438 * 19 17 14 21 21 Si 1.86800 * 120.00348 * 179.97438 * 19 17 14 22 22 H 1.48496 * 109.46743 * 90.00263 * 21 19 17 23 23 H 1.48490 * 109.46991 * 210.00257 * 21 19 17 24 24 H 1.48498 * 109.47071 * 330.00148 * 21 19 17 25 25 H 1.09001 * 109.47194 * 299.99575 * 1 2 3 26 26 H 1.08992 * 109.47399 * 59.99748 * 1 2 3 27 27 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47398 * 120.00244 * 2 1 3 29 29 H 1.09001 * 109.47194 * 240.00425 * 2 1 3 30 30 H 1.08004 * 119.92793 * 0.02645 * 5 4 3 31 31 H 1.07996 * 119.79894 * 180.27862 * 6 5 4 32 32 H 1.07999 * 119.88074 * 179.71814 * 7 6 5 33 33 H 1.07998 * 120.00387 * 179.97438 * 11 10 8 34 34 H 0.97002 * 120.00646 * 359.97438 * 13 12 11 35 35 H 1.08997 * 109.47216 * 60.00456 * 16 14 13 36 36 H 1.09008 * 109.46779 * 180.02562 * 16 14 13 37 37 H 1.08994 * 109.47444 * 300.00133 * 16 14 13 38 38 H 0.97001 * 119.99799 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3530 1.5253 -0.0005 5 6 4.1991 0.4288 0.0048 6 6 5.5698 0.6093 -0.0011 7 6 6.1080 1.8842 -0.0007 8 6 5.2791 2.9896 -0.0006 9 9 5.8081 4.2328 0.0003 10 6 3.8912 2.8188 -0.0005 11 6 2.9996 3.9927 -0.0010 12 7 3.5022 5.1891 -0.0011 13 7 2.6548 6.3047 -0.0011 14 6 3.2222 7.6555 -0.0006 15 1 4.1832 7.6457 0.5135 16 6 3.4202 8.1259 -1.4429 17 6 2.2821 8.5950 0.7097 18 1 1.3545 8.2232 1.1194 19 6 2.6060 9.9292 0.8365 20 7 3.7358 10.3817 0.3380 21 14 1.4404 11.0939 1.7164 22 1 1.7757 11.1308 3.1625 23 1 1.5752 12.4565 1.1420 24 1 0.0436 10.6200 1.5440 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5139 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 3.7872 -0.5696 0.0089 31 1 6.2243 -0.2497 -0.0014 32 1 7.1800 2.0156 -0.0006 33 1 1.9282 3.8571 -0.0013 34 1 1.6925 6.1830 -0.0013 35 1 2.4592 8.1358 -1.9571 36 1 3.8427 9.1308 -1.4426 37 1 4.1001 7.4464 -1.9567 38 1 3.9635 11.3204 0.4269 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000872357675.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:45:48 Heat of formation + Delta-G solvation = -16.480197 kcal Electronic energy + Delta-G solvation = -21143.565495 eV Core-core repulsion = 17709.034824 eV Total energy + Delta-G solvation = -3434.530671 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.133 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -48.38849 -40.12649 -37.38693 -36.30079 -34.09197 -32.32984 -31.57371 -30.05388 -29.52425 -26.99834 -25.19174 -24.25108 -23.17726 -21.82152 -20.50991 -19.98530 -18.38313 -17.17893 -16.59607 -16.29620 -15.86869 -15.68903 -15.12996 -15.08650 -14.84388 -14.32901 -13.95681 -13.38734 -13.17409 -12.90660 -12.61474 -12.50416 -12.41160 -12.23529 -11.85244 -11.57612 -11.43127 -11.12963 -10.96473 -10.85734 -10.84818 -10.55158 -10.20553 -10.17357 -9.39736 -9.01517 -8.76569 -8.46000 -8.31056 -6.70519 -6.09968 -4.18229 1.02306 1.30654 2.98197 3.00316 3.26891 3.32866 3.35448 3.80998 3.88878 4.38632 4.52816 4.64064 4.69192 4.86996 4.93195 4.97337 5.02719 5.22113 5.25247 5.33332 5.55776 5.58002 5.81218 5.93617 5.99524 6.06462 6.30939 6.41770 6.75182 6.82141 6.98227 7.05720 7.20386 7.33558 7.61878 7.82474 7.90613 8.19188 8.34809 8.89433 9.37512 9.48312 10.95959 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.020607 B = 0.003832 C = 0.003355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1358.416309 B = 7305.276769 C = 8343.320006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.054 3.946 3 O -0.306 6.306 4 C 0.161 3.839 5 C -0.222 4.222 6 C -0.063 4.063 7 C -0.193 4.193 8 C 0.151 3.849 9 F -0.109 7.109 10 C -0.071 4.071 11 C -0.014 4.014 12 N -0.182 5.182 13 N -0.619 5.619 14 C 0.296 3.704 15 H 0.043 0.957 16 C -0.150 4.150 17 C -0.530 4.530 18 H 0.060 0.940 19 C 0.067 3.933 20 N -0.886 5.886 21 Si 0.903 3.097 22 H -0.279 1.279 23 H -0.285 1.285 24 H -0.274 1.274 25 H 0.067 0.933 26 H 0.067 0.933 27 H 0.077 0.923 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.131 0.869 31 H 0.131 0.869 32 H 0.135 0.865 33 H 0.110 0.890 34 H 0.368 0.632 35 H 0.025 0.975 36 H 0.090 0.910 37 H 0.013 0.987 38 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.898 -22.318 -1.373 22.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.021 4.021 3 O -0.219 6.219 4 C 0.112 3.888 5 C -0.241 4.241 6 C -0.082 4.082 7 C -0.212 4.212 8 C 0.129 3.871 9 F -0.087 7.087 10 C -0.075 4.075 11 C -0.221 4.221 12 N 0.004 4.996 13 N -0.355 5.355 14 C 0.194 3.806 15 H 0.061 0.939 16 C -0.209 4.209 17 C -0.569 4.569 18 H 0.078 0.922 19 C -0.136 4.136 20 N -0.523 5.523 21 Si 0.731 3.269 22 H -0.205 1.205 23 H -0.210 1.210 24 H -0.199 1.199 25 H 0.086 0.914 26 H 0.086 0.914 27 H 0.095 0.905 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.149 0.851 31 H 0.149 0.851 32 H 0.153 0.847 33 H 0.127 0.873 34 H 0.204 0.796 35 H 0.044 0.956 36 H 0.108 0.892 37 H 0.032 0.968 38 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -0.037 -21.171 -1.393 21.217 hybrid contribution -1.642 0.263 0.432 1.718 sum -1.679 -20.909 -0.961 20.998 Atomic orbital electron populations 1.21779 0.92744 1.02707 1.03806 1.22806 0.95926 0.81988 1.01370 1.86089 1.18591 1.29096 1.88164 1.18525 0.82509 0.92096 0.95655 1.21066 0.94178 0.97731 1.11154 1.20686 0.94191 0.96363 0.96963 1.20981 1.00320 0.91559 1.08325 1.17485 0.90005 0.80434 0.99170 1.91628 1.85860 1.38530 1.92676 1.17734 0.90953 0.90520 1.08273 1.23063 0.96678 0.89494 1.12868 1.74137 1.26419 0.95878 1.03194 1.49113 1.04422 1.02027 1.79979 1.18555 0.95171 0.73830 0.93039 0.93905 1.22194 0.98361 1.02620 0.97709 1.21239 1.05783 0.93157 1.36754 0.92213 1.24860 0.95477 0.97880 0.95424 1.69899 1.22409 1.15315 1.44717 0.86420 0.80916 0.79914 0.79694 1.20539 1.21030 1.19892 0.91387 0.91401 0.90468 0.91952 0.91964 0.85132 0.85145 0.84744 0.87282 0.79589 0.95572 0.89154 0.96803 0.92581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 10.28 37.16 0.38 -0.69 16 2 C 0.05 0.45 5.46 37.16 0.20 0.65 16 3 O -0.31 -3.90 9.32 -19.26 -0.18 -4.07 16 4 C 0.16 2.18 6.70 -38.79 -0.26 1.92 16 5 C -0.22 -2.36 9.03 -39.48 -0.36 -2.72 16 6 C -0.06 -0.64 10.03 -39.52 -0.40 -1.03 16 7 C -0.19 -2.42 10.01 -39.55 -0.40 -2.81 16 8 C 0.15 2.48 7.28 -39.01 -0.28 2.20 16 9 F -0.11 -2.13 15.36 2.25 0.03 -2.09 16 10 C -0.07 -1.18 5.88 -104.87 -0.62 -1.80 16 11 C -0.01 -0.27 10.49 -14.69 -0.15 -0.42 16 12 N -0.18 -4.10 9.54 32.14 0.31 -3.79 16 13 N -0.62 -14.65 6.10 -5.88 -0.04 -14.69 16 14 C 0.30 7.91 3.23 -69.08 -0.22 7.69 16 15 H 0.04 1.28 8.14 -51.93 -0.42 0.85 16 16 C -0.15 -3.85 9.29 37.16 0.35 -3.50 16 17 C -0.53 -14.69 8.74 -34.44 -0.30 -14.99 16 18 H 0.06 1.62 7.79 -52.48 -0.41 1.21 16 19 C 0.07 1.84 5.30 -17.82 -0.09 1.74 16 20 N -0.89 -25.28 11.32 55.43 0.63 -24.65 16 21 Si 0.90 21.20 29.54 -169.99 -5.02 16.17 16 22 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 23 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 24 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 25 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.06 0.43 7.65 -51.93 -0.40 0.04 16 29 H 0.06 0.43 7.67 -51.93 -0.40 0.03 16 30 H 0.13 1.00 6.29 -52.48 -0.33 0.67 16 31 H 0.13 0.90 8.06 -52.49 -0.42 0.47 16 32 H 0.13 1.41 8.06 -52.49 -0.42 0.99 16 33 H 0.11 1.96 7.60 -52.49 -0.40 1.56 16 34 H 0.37 8.07 8.58 -182.60 -1.57 6.50 16 35 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.09 2.47 6.07 -51.92 -0.32 2.16 16 37 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 38 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 LS Contribution 329.15 15.07 4.96 4.96 Total: -1.00 -30.89 329.15 -7.79 -38.68 By element: Atomic # 1 Polarization: 9.58 SS G_CDS: -6.33 Total: 3.25 kcal Atomic # 6 Polarization: -11.61 SS G_CDS: -2.15 Total: -13.77 kcal Atomic # 7 Polarization: -44.03 SS G_CDS: 0.90 Total: -43.13 kcal Atomic # 8 Polarization: -3.90 SS G_CDS: -0.18 Total: -4.07 kcal Atomic # 9 Polarization: -2.13 SS G_CDS: 0.03 Total: -2.09 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -30.89 -7.79 -38.68 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000872357675.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.198 kcal (2) G-P(sol) polarization free energy of solvation -30.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds