Wall clock time and date at job start Tue Mar 31 2020 02:46:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42900 * 109.47121 * 2 1 4 4 C 1.35900 * 117.00213 * 179.97438 * 3 2 1 5 5 C 1.38834 * 119.96737 * 359.97438 * 4 3 2 6 6 C 1.38465 * 120.24035 * 180.02562 * 5 4 3 7 7 F 1.35098 * 119.91789 * 179.97438 * 6 5 4 8 8 C 1.38221 * 120.16592 * 359.69499 * 6 5 4 9 9 C 1.39655 * 119.92323 * 0.58007 * 8 6 5 10 10 C 1.47496 * 120.11660 * 179.72017 * 9 8 6 11 11 N 1.29744 * 120.00019 * 359.72568 * 10 9 8 12 12 N 1.40099 * 119.99872 * 180.02562 * 11 10 9 13 13 C 1.46500 * 119.99918 * 179.97438 * 12 11 10 14 14 H 1.08993 * 109.47452 * 329.99734 * 13 12 11 15 15 C 1.53006 * 109.46998 * 89.99656 * 13 12 11 16 16 C 1.50698 * 109.46840 * 209.99483 * 13 12 11 17 17 H 1.07993 * 120.00472 * 359.97438 * 16 13 12 18 18 C 1.37884 * 119.99909 * 179.97438 * 16 13 12 19 19 N 1.31522 * 119.99817 * 0.02562 * 18 16 13 20 20 Si 1.86798 * 120.00071 * 180.02562 * 18 16 13 21 21 H 1.48500 * 109.46728 * 90.00208 * 20 18 16 22 22 H 1.48498 * 109.46997 * 209.99903 * 20 18 16 23 23 H 1.48494 * 109.47182 * 330.00149 * 20 18 16 24 24 C 1.38440 * 119.96669 * 180.02562 * 4 3 2 25 25 H 1.08997 * 109.47198 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.46927 * 299.99647 * 1 2 3 27 27 H 1.08998 * 109.47211 * 59.99349 * 1 2 3 28 28 H 1.09003 * 109.46927 * 240.00353 * 2 1 3 29 29 H 1.08994 * 109.47237 * 120.00169 * 2 1 3 30 30 H 1.08007 * 119.87791 * 0.02562 * 5 4 3 31 31 H 1.07993 * 120.03773 * 180.30050 * 8 6 5 32 32 H 1.07997 * 120.00023 * 179.72491 * 10 9 8 33 33 H 0.97007 * 119.99995 * 359.97438 * 12 11 10 34 34 H 1.09001 * 109.46801 * 60.00058 * 15 13 12 35 35 H 1.09001 * 109.46998 * 179.97438 * 15 13 12 36 36 H 1.09000 * 109.47050 * 299.99945 * 15 13 12 37 37 H 0.96991 * 120.00052 * 179.97438 * 19 18 16 38 38 H 1.07998 * 120.08107 * 0.02562 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3536 1.5254 0.0005 5 6 4.1987 0.4239 0.0016 6 6 5.5723 0.5989 0.0027 7 9 6.3886 -0.4776 0.0042 8 6 6.1103 1.8720 -0.0036 9 6 5.2666 2.9849 0.0011 10 6 5.8362 4.3454 0.0006 11 7 7.1232 4.5099 0.0012 12 7 7.6641 5.8023 0.0013 13 6 9.1173 5.9880 0.0024 14 1 9.5902 5.1515 0.5169 15 6 9.6244 6.0522 -1.4397 16 6 9.4589 7.2725 0.7127 17 1 8.6723 7.8890 1.1218 18 6 10.7758 7.6606 0.8401 19 7 11.7338 6.9101 0.3414 20 14 11.1993 9.2524 1.7211 21 1 11.3989 8.9798 3.1671 22 1 12.4464 9.8190 1.1475 23 1 10.0895 10.2238 1.5490 24 6 3.8819 2.8050 0.0011 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 3.7832 -0.5730 0.0016 31 1 7.1819 2.0060 -0.0077 32 1 5.1820 5.2047 -0.0002 33 1 7.0765 6.5741 0.0005 34 1 9.1516 6.8887 -1.9542 35 1 10.7056 6.1908 -1.4388 36 1 9.3773 5.1231 -1.9534 37 1 12.6602 7.1832 0.4307 38 1 3.2247 3.6620 0.0015 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000872358578.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:46:33 Heat of formation + Delta-G solvation = -25.269704 kcal Electronic energy + Delta-G solvation = -20437.804145 eV Core-core repulsion = 17002.892332 eV Total energy + Delta-G solvation = -3434.911813 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.133 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -48.84173 -40.14334 -37.78701 -36.29578 -34.08327 -32.21548 -31.78551 -30.29605 -29.42692 -27.23931 -25.30095 -24.45235 -22.73731 -22.42980 -20.56431 -20.17834 -18.22685 -17.20859 -16.42429 -16.38977 -16.20787 -16.11681 -15.45997 -15.10411 -15.03255 -14.40171 -14.12875 -13.51360 -13.28049 -13.08431 -12.83808 -12.71181 -12.53239 -12.12634 -11.96447 -11.53342 -11.45921 -11.31353 -11.07420 -11.03379 -10.82261 -10.52217 -10.28801 -10.23970 -9.68244 -9.13055 -8.90189 -8.54421 -8.27578 -6.95421 -6.18420 -4.27182 0.92572 1.32665 2.83138 2.91001 3.21995 3.28473 3.30511 3.69051 3.88733 4.22606 4.32375 4.60815 4.62491 4.80067 4.90645 4.98146 5.08593 5.14209 5.20848 5.35461 5.45678 5.54180 5.69448 5.76547 6.05532 6.07725 6.26336 6.40575 6.64845 6.73712 6.89859 6.94113 7.08232 7.25289 7.51469 7.70657 7.78651 8.06311 8.21350 8.79078 9.17591 9.39732 10.87548 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.031736 B = 0.002827 C = 0.002679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 882.057725 B = 9901.406979 C =10450.790089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.052 3.948 3 O -0.312 6.312 4 C 0.158 3.842 5 C -0.259 4.259 6 C 0.139 3.861 7 F -0.139 7.139 8 C -0.173 4.173 9 C 0.066 3.934 10 C -0.025 4.025 11 N -0.180 5.180 12 N -0.613 5.613 13 C 0.294 3.706 14 H 0.044 0.956 15 C -0.151 4.151 16 C -0.532 4.532 17 H 0.061 0.939 18 C 0.067 3.933 19 N -0.885 5.885 20 Si 0.904 3.096 21 H -0.279 1.279 22 H -0.284 1.284 23 H -0.274 1.274 24 C -0.159 4.159 25 H 0.077 0.923 26 H 0.066 0.934 27 H 0.066 0.934 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.135 0.865 31 H 0.147 0.853 32 H 0.109 0.891 33 H 0.371 0.629 34 H 0.027 0.973 35 H 0.091 0.909 36 H 0.013 0.987 37 H 0.265 0.735 38 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.430 -12.250 -1.377 22.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.023 4.023 3 O -0.226 6.226 4 C 0.113 3.887 5 C -0.280 4.280 6 C 0.120 3.880 7 F -0.118 7.118 8 C -0.194 4.194 9 C 0.064 3.936 10 C -0.232 4.232 11 N 0.006 4.994 12 N -0.350 5.350 13 C 0.192 3.808 14 H 0.062 0.938 15 C -0.210 4.210 16 C -0.572 4.572 17 H 0.079 0.921 18 C -0.136 4.136 19 N -0.522 5.522 20 Si 0.732 3.268 21 H -0.205 1.205 22 H -0.210 1.210 23 H -0.199 1.199 24 C -0.180 4.180 25 H 0.096 0.904 26 H 0.085 0.915 27 H 0.085 0.915 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.152 0.848 31 H 0.164 0.836 32 H 0.127 0.873 33 H 0.208 0.792 34 H 0.046 0.954 35 H 0.110 0.890 36 H 0.033 0.967 37 H 0.075 0.925 38 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -17.222 -12.550 -1.398 21.355 hybrid contribution -0.373 1.230 0.432 1.356 sum -17.596 -11.319 -0.967 20.944 Atomic orbital electron populations 1.21775 0.92713 1.02817 1.03596 1.22803 0.95858 0.82024 1.01589 1.86085 1.18636 1.29246 1.88628 1.18365 0.81999 0.93084 0.95276 1.21039 0.92493 0.99402 1.15040 1.17241 0.87162 0.83252 1.00359 1.91495 1.72469 1.54054 1.93735 1.21287 1.02103 0.89792 1.06254 1.17900 0.90962 0.91144 0.93634 1.23294 0.91763 0.94543 1.13580 1.73907 1.13933 1.09330 1.02265 1.49203 1.08449 0.98210 1.79088 1.18624 0.71885 0.97047 0.93207 0.93834 1.22211 1.04343 0.96939 0.97528 1.21206 0.92636 1.06318 1.36991 0.92119 1.24869 0.95968 0.97441 0.95361 1.69886 1.00130 1.37709 1.44523 0.86400 0.77949 0.82794 0.79694 1.20491 1.20990 1.19858 1.20362 0.93974 0.95008 1.08677 0.90420 0.91457 0.91469 0.91915 0.91906 0.84755 0.83561 0.87333 0.79229 0.95417 0.89019 0.96746 0.92472 0.84447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.86 10.28 37.16 0.38 -0.48 16 2 C 0.05 0.40 5.46 37.16 0.20 0.60 16 3 O -0.31 -3.43 10.13 -19.43 -0.20 -3.62 16 4 C 0.16 1.94 6.68 -39.29 -0.26 1.68 16 5 C -0.26 -3.13 9.01 -39.28 -0.35 -3.49 16 6 C 0.14 1.96 7.29 -39.50 -0.29 1.67 16 7 F -0.14 -2.00 17.26 2.25 0.04 -1.96 16 8 C -0.17 -2.66 9.55 -39.06 -0.37 -3.03 16 9 C 0.07 0.99 5.87 -105.08 -0.62 0.37 16 10 C -0.03 -0.41 10.75 -14.66 -0.16 -0.57 16 11 N -0.18 -3.59 10.61 32.16 0.34 -3.25 16 12 N -0.61 -13.25 6.10 -5.88 -0.04 -13.28 16 13 C 0.29 7.37 3.23 -69.08 -0.22 7.15 16 14 H 0.04 1.21 8.14 -51.93 -0.42 0.79 16 15 C -0.15 -3.66 9.29 37.16 0.35 -3.32 16 16 C -0.53 -14.07 8.74 -34.44 -0.30 -14.37 16 17 H 0.06 1.57 7.78 -52.49 -0.41 1.16 16 18 C 0.07 1.78 5.30 -17.81 -0.09 1.69 16 19 N -0.88 -24.41 11.32 55.43 0.63 -23.78 16 20 Si 0.90 20.56 29.54 -169.99 -5.02 15.54 16 21 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 22 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 23 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 24 C -0.16 -2.04 9.72 -38.99 -0.38 -2.42 16 25 H 0.08 0.30 8.14 -51.93 -0.42 -0.13 16 26 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.06 0.43 7.66 -51.93 -0.40 0.03 16 29 H 0.06 0.43 7.65 -51.93 -0.40 0.03 16 30 H 0.13 1.31 6.28 -52.48 -0.33 0.98 16 31 H 0.15 2.43 7.55 -52.49 -0.40 2.03 16 32 H 0.11 1.55 8.02 -52.49 -0.42 1.13 16 33 H 0.37 7.35 8.58 -182.59 -1.57 5.79 16 34 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 35 H 0.09 2.40 6.07 -51.93 -0.32 2.08 16 36 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 37 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 38 H 0.14 1.52 8.06 -52.49 -0.42 1.10 16 LS Contribution 332.27 15.07 5.01 5.01 Total: -1.00 -28.22 332.27 -7.68 -35.90 By element: Atomic # 1 Polarization: 10.30 SS G_CDS: -6.33 Total: 3.98 kcal Atomic # 6 Polarization: -12.41 SS G_CDS: -2.12 Total: -14.53 kcal Atomic # 7 Polarization: -41.24 SS G_CDS: 0.93 Total: -40.31 kcal Atomic # 8 Polarization: -3.43 SS G_CDS: -0.20 Total: -3.62 kcal Atomic # 9 Polarization: -2.00 SS G_CDS: 0.04 Total: -1.96 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -28.22 -7.68 -35.90 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000872358578.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.634 kcal (2) G-P(sol) polarization free energy of solvation -28.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds