Wall clock time and date at job start Tue Mar 31 2020 02:15:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.62214 * 2 1 4 4 C 1.53233 * 109.63029 * 239.60932 * 2 1 3 5 5 N 1.46901 * 109.33793 * 186.45834 * 4 2 1 6 6 C 1.46908 * 110.99783 * 187.25565 * 5 4 2 7 7 C 1.50697 * 109.47031 * 170.00277 * 6 5 4 8 8 C 1.38432 * 122.53925 * 90.00015 * 7 6 5 9 9 C 1.33388 * 114.92008 * 180.27118 * 8 7 6 10 10 S 1.75890 * 109.59437 * 359.63337 * 9 8 7 11 11 C 1.33388 * 122.53897 * 270.02738 * 7 6 5 12 12 C 1.46898 * 111.26827 * 63.11227 * 5 4 2 13 13 C 1.53242 * 109.33663 * 296.89485 * 12 5 4 14 14 H 1.08997 * 109.78774 * 173.63766 * 13 12 5 15 15 C 1.53001 * 109.62645 * 294.11873 * 13 12 5 16 16 N 1.47071 * 108.52638 * 53.82736 * 13 12 5 17 17 C 1.36940 * 120.88410 * 128.79036 * 16 13 12 18 18 H 1.07995 * 120.00324 * 206.35678 * 17 16 13 19 19 C 1.38812 * 119.99780 * 26.35688 * 17 16 13 20 20 N 1.31626 * 119.99711 * 17.41031 * 19 17 16 21 21 Si 1.86798 * 120.00148 * 197.40934 * 19 17 16 22 22 H 1.48501 * 109.46803 * 60.00237 * 21 19 17 23 23 H 1.48506 * 109.46962 * 179.97438 * 21 19 17 24 24 H 1.48495 * 109.47096 * 300.00120 * 21 19 17 25 25 H 1.09006 * 109.47009 * 180.38397 * 1 2 3 26 26 H 1.09001 * 109.47507 * 300.38829 * 1 2 3 27 27 H 1.09002 * 109.47248 * 60.38757 * 1 2 3 28 28 H 1.09011 * 109.49199 * 66.50352 * 4 2 1 29 29 H 1.08998 * 109.52006 * 306.43588 * 4 2 1 30 30 H 1.08998 * 109.46822 * 50.00472 * 6 5 4 31 31 H 1.08998 * 109.46897 * 290.00467 * 6 5 4 32 32 H 1.07991 * 122.53885 * 359.97438 * 8 7 6 33 33 H 1.07997 * 125.20552 * 179.75344 * 9 8 7 34 34 H 1.07997 * 125.20220 * 0.02562 * 11 7 6 35 35 H 1.08997 * 109.49670 * 56.84882 * 12 5 4 36 36 H 1.09000 * 109.49592 * 176.93378 * 12 5 4 37 37 H 1.09001 * 109.47494 * 179.03187 * 15 13 12 38 38 H 1.09006 * 109.46929 * 299.03245 * 15 13 12 39 39 H 1.08995 * 109.47424 * 59.02868 * 15 13 12 40 40 H 0.97002 * 120.00130 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8960 1.0267 0.0000 4 6 2.0448 -0.7301 -1.2450 5 7 3.5055 -0.8623 -1.1622 6 6 4.0569 -1.4020 -2.4123 7 6 5.5599 -1.2950 -2.3859 8 6 6.3693 -2.3008 -1.8863 9 6 7.6775 -2.0440 -1.9316 10 16 7.9431 -0.4592 -2.6468 11 6 6.2110 -0.2237 -2.8415 12 6 3.9016 -1.6870 -0.0129 13 6 3.4628 -0.9962 1.2827 14 1 3.6512 -1.6520 2.1327 15 6 4.2415 0.3091 1.4582 16 7 2.0240 -0.7048 1.1927 17 6 1.1670 -1.0803 2.1926 18 1 0.1256 -1.2616 1.9714 19 6 1.6368 -1.2279 3.4904 20 7 2.7877 -0.6925 3.8385 21 14 0.6357 -2.1863 4.7428 22 1 0.4521 -3.5810 4.2670 23 1 1.3511 -2.1980 6.0441 24 1 -0.6916 -1.5425 4.9128 25 1 -0.3633 -1.0277 0.0069 26 1 -0.3634 0.5198 0.8865 27 1 -0.3634 0.5078 -0.8934 28 1 1.7811 -0.1602 -2.1360 29 1 1.5925 -1.7203 -1.2995 30 1 3.6670 -0.8335 -3.2566 31 1 3.7689 -2.4482 -2.5146 32 1 5.9715 -3.2213 -1.4857 33 1 8.4547 -2.7085 -1.5842 34 1 5.7457 0.6543 -3.2646 35 1 3.4234 -2.6639 -0.0840 36 1 4.9845 -1.8111 -0.0102 37 1 3.9152 0.8069 2.3714 38 1 5.3073 0.0903 1.5246 39 1 4.0568 0.9601 0.6038 40 1 3.1159 -0.7953 4.7455 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000878773409.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:15:12 Heat of formation + Delta-G solvation = 69.613076 kcal Electronic energy + Delta-G solvation = -20783.797960 eV Core-core repulsion = 17919.213749 eV Total energy + Delta-G solvation = -2864.584211 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 280.130 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.05073 -37.47452 -34.39821 -32.48713 -31.32258 -29.74304 -27.81762 -26.57831 -25.78976 -24.19304 -23.00112 -21.65794 -20.50050 -18.64398 -18.44005 -17.40276 -16.20577 -15.43149 -15.15368 -14.62467 -14.23429 -13.86313 -13.78126 -13.25396 -12.99333 -12.84838 -12.57446 -12.41307 -11.97246 -11.79008 -11.54923 -11.39122 -11.14562 -10.92936 -10.83859 -10.67557 -10.50901 -10.45905 -10.37843 -9.97339 -9.83366 -9.38596 -9.17655 -8.64469 -8.40804 -8.27422 -7.68256 -6.56382 -5.70102 -3.10555 1.15322 1.79058 2.09717 2.82456 3.41111 3.47425 3.48191 4.52779 4.62061 5.03672 5.17323 5.36936 5.39751 5.46586 5.56244 5.70737 5.80015 5.88738 5.96098 6.15133 6.16555 6.20332 6.30515 6.37055 6.42053 6.48991 6.52855 6.63648 6.72041 6.92253 7.00981 7.10140 7.19223 7.30952 7.60239 7.66872 7.79874 7.93053 8.02774 8.52385 9.30835 9.93690 10.51940 11.37261 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.024695 B = 0.005075 C = 0.004584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1133.573695 B = 5516.339237 C = 6106.314706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.172 3.828 3 H 0.033 0.967 4 C 0.049 3.951 5 N -0.523 5.523 6 C 0.110 3.890 7 C -0.087 4.087 8 C -0.122 4.122 9 C -0.215 4.215 10 S 0.071 5.929 11 C -0.189 4.189 12 C 0.041 3.959 13 C 0.198 3.802 14 H 0.094 0.906 15 C -0.132 4.132 16 N -0.585 5.585 17 C -0.248 4.248 18 H 0.070 0.930 19 C 0.001 3.999 20 N -0.898 5.898 21 Si 0.897 3.103 22 H -0.287 1.287 23 H -0.292 1.292 24 H -0.284 1.284 25 H 0.051 0.949 26 H 0.062 0.938 27 H 0.038 0.962 28 H 0.059 0.941 29 H 0.027 0.973 30 H 0.075 0.925 31 H 0.035 0.965 32 H 0.137 0.863 33 H 0.161 0.839 34 H 0.162 0.838 35 H 0.020 0.980 36 H 0.064 0.936 37 H 0.071 0.929 38 H 0.018 0.982 39 H 0.032 0.968 40 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.541 -1.117 -13.236 14.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.065 3.935 3 H 0.050 0.950 4 C -0.080 4.080 5 N -0.247 5.247 6 C -0.020 4.020 7 C -0.099 4.099 8 C -0.153 4.153 9 C -0.350 4.350 10 S 0.334 5.666 11 C -0.326 4.326 12 C -0.088 4.088 13 C 0.092 3.908 14 H 0.111 0.889 15 C -0.191 4.191 16 N -0.308 5.308 17 C -0.378 4.378 18 H 0.087 0.913 19 C -0.197 4.197 20 N -0.543 5.543 21 Si 0.728 3.272 22 H -0.213 1.213 23 H -0.218 1.218 24 H -0.211 1.211 25 H 0.070 0.930 26 H 0.081 0.919 27 H 0.057 0.943 28 H 0.077 0.923 29 H 0.045 0.955 30 H 0.093 0.907 31 H 0.053 0.947 32 H 0.154 0.846 33 H 0.178 0.822 34 H 0.180 0.820 35 H 0.039 0.961 36 H 0.083 0.917 37 H 0.090 0.910 38 H 0.037 0.963 39 H 0.051 0.949 40 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 8.089 0.210 -13.314 15.580 hybrid contribution -1.925 -2.153 0.986 3.052 sum 6.163 -1.942 -12.327 13.918 Atomic orbital electron populations 1.21806 0.96162 1.01268 1.00303 1.20445 0.92144 0.94243 0.86680 0.94989 1.22675 0.86780 0.99098 0.99466 1.61975 1.10661 1.50532 1.01558 1.20748 0.89201 0.98088 0.93987 1.18833 0.96770 0.93816 1.00506 1.20140 0.92494 1.00737 1.01947 1.25474 1.00057 1.00261 1.09198 1.84115 1.06664 1.14882 1.60921 1.25370 0.95270 1.02828 1.09083 1.22909 0.99055 0.94138 0.92733 1.20391 0.82768 0.95230 0.92436 0.88869 1.21922 0.96489 0.99464 1.01251 1.44278 1.03536 1.64926 1.18032 1.19152 0.92813 1.39156 0.86639 0.91279 1.24979 0.97666 1.00395 0.96661 1.70017 1.21141 1.45173 1.17989 0.86449 0.79522 0.80370 0.80889 1.21344 1.21771 1.21088 0.92979 0.91880 0.94288 0.92269 0.95470 0.90681 0.94675 0.84563 0.82187 0.82033 0.96147 0.91733 0.91033 0.96272 0.94883 0.93810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.57 7.93 37.16 0.29 -2.28 16 2 C 0.17 3.59 3.25 -67.49 -0.22 3.37 16 3 H 0.03 0.72 7.64 -51.93 -0.40 0.33 16 4 C 0.05 0.89 4.91 -3.70 -0.02 0.87 16 5 N -0.52 -9.33 4.11 -235.76 -0.97 -10.30 16 6 C 0.11 1.61 5.23 -4.97 -0.03 1.59 16 7 C -0.09 -1.22 4.76 -106.25 -0.51 -1.73 16 8 C -0.12 -1.64 8.25 -41.20 -0.34 -1.98 16 9 C -0.21 -2.59 11.23 29.04 0.33 -2.27 16 10 S 0.07 0.84 23.34 -107.50 -2.51 -1.67 16 11 C -0.19 -2.48 10.98 29.04 0.32 -2.16 16 12 C 0.04 0.81 4.78 -3.70 -0.02 0.79 16 13 C 0.20 4.70 2.36 -67.49 -0.16 4.54 16 14 H 0.09 2.51 6.10 -51.93 -0.32 2.19 16 15 C -0.13 -3.09 8.96 37.16 0.33 -2.76 16 16 N -0.58 -14.30 2.73 -157.01 -0.43 -14.73 16 17 C -0.25 -6.60 8.73 -15.06 -0.13 -6.73 16 18 H 0.07 1.80 6.16 -52.49 -0.32 1.48 16 19 C 0.00 0.03 4.93 -17.43 -0.09 -0.05 16 20 N -0.90 -25.38 9.80 55.49 0.54 -24.83 16 21 Si 0.90 21.57 29.59 -169.99 -5.03 16.54 16 22 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 23 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 24 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 25 H 0.05 0.99 7.54 -51.93 -0.39 0.59 16 26 H 0.06 1.27 7.57 -51.93 -0.39 0.88 16 27 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.06 0.92 7.99 -51.92 -0.41 0.51 16 29 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 30 H 0.07 0.98 7.95 -51.93 -0.41 0.57 16 31 H 0.04 0.51 8.11 -51.93 -0.42 0.09 16 32 H 0.14 1.74 8.01 -52.49 -0.42 1.32 16 33 H 0.16 1.56 8.06 -52.49 -0.42 1.14 16 34 H 0.16 1.90 8.06 -52.49 -0.42 1.48 16 35 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.06 1.23 5.77 -51.93 -0.30 0.93 16 37 H 0.07 1.88 6.91 -51.93 -0.36 1.53 16 38 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.03 0.75 7.08 -51.93 -0.37 0.38 16 40 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 LS Contribution 321.01 15.07 4.84 4.84 Total: -1.00 -28.25 321.01 -9.97 -38.22 By element: Atomic # 1 Polarization: 6.93 SS G_CDS: -6.19 Total: 0.74 kcal Atomic # 6 Polarization: -8.57 SS G_CDS: -0.23 Total: -8.80 kcal Atomic # 7 Polarization: -49.01 SS G_CDS: -0.85 Total: -49.86 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.03 Total: 16.54 kcal Atomic # 16 Polarization: 0.84 SS G_CDS: -2.51 Total: -1.67 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -28.25 -9.97 -38.22 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878773409.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.833 kcal (2) G-P(sol) polarization free energy of solvation -28.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.220 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds