Wall clock time and date at job start Tue Mar 31 2020 02:14:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.78283 * 2 1 4 4 C 1.53235 * 109.63322 * 120.48330 * 2 1 3 5 5 N 1.46905 * 109.33995 * 65.88343 * 4 2 1 6 6 C 1.46893 * 111.00029 * 187.25310 * 5 4 2 7 7 C 1.50701 * 109.46860 * 169.99606 * 6 5 4 8 8 C 1.33399 * 125.20004 * 90.00442 * 7 6 5 9 9 C 1.38423 * 114.91993 * 179.97438 * 8 7 6 10 10 C 1.33390 * 114.91979 * 359.97438 * 9 8 7 11 11 S 1.75877 * 125.20805 * 269.69477 * 7 6 5 12 12 C 1.46900 * 111.26493 * 63.10208 * 5 4 2 13 13 C 1.53239 * 109.34541 * 296.89475 * 12 5 4 14 14 H 1.09004 * 109.62860 * 294.12862 * 13 12 5 15 15 C 1.52995 * 109.79166 * 173.63783 * 13 12 5 16 16 N 1.47080 * 109.62878 * 239.51992 * 2 1 3 17 17 C 1.36933 * 120.88450 * 111.45079 * 16 2 1 18 18 H 1.08001 * 120.00244 * 151.87782 * 17 16 2 19 19 C 1.38817 * 119.99995 * 331.87587 * 17 16 2 20 20 N 1.31617 * 119.99796 * 342.76889 * 19 17 16 21 21 Si 1.86801 * 120.00036 * 162.76817 * 19 17 16 22 22 H 1.48499 * 109.46909 * 359.97438 * 21 19 17 23 23 H 1.48504 * 109.46852 * 120.00062 * 21 19 17 24 24 H 1.48499 * 109.46691 * 240.00006 * 21 19 17 25 25 H 1.09007 * 109.46874 * 299.50925 * 1 2 3 26 26 H 1.08995 * 109.47422 * 59.51886 * 1 2 3 27 27 H 1.09004 * 109.46687 * 179.51866 * 1 2 3 28 28 H 1.09002 * 109.49430 * 305.92220 * 4 2 1 29 29 H 1.09000 * 109.49530 * 185.84179 * 4 2 1 30 30 H 1.08999 * 109.47442 * 290.00088 * 6 5 4 31 31 H 1.08997 * 109.47124 * 50.00225 * 6 5 4 32 32 H 1.07997 * 122.53791 * 359.97438 * 8 7 6 33 33 H 1.08000 * 122.53819 * 180.02562 * 9 8 7 34 34 H 1.07999 * 125.19924 * 180.02562 * 10 9 8 35 35 H 1.08995 * 109.49221 * 56.86070 * 12 5 4 36 36 H 1.09008 * 109.49109 * 176.93644 * 12 5 4 37 37 H 1.09001 * 109.46868 * 296.62391 * 15 13 12 38 38 H 1.08993 * 109.46961 * 56.61966 * 15 13 12 39 39 H 1.09004 * 109.47426 * 176.62381 * 15 13 12 40 40 H 0.96994 * 120.00294 * 175.12236 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8989 1.0257 0.0000 4 6 2.0448 -0.7322 1.2438 5 7 1.6749 -2.1514 1.1609 6 6 1.9981 -2.8536 2.4100 7 6 1.3886 -4.2316 2.3838 8 6 1.9863 -5.3279 1.9143 9 6 1.2297 -6.4843 1.9945 10 6 0.0180 -6.3273 2.5295 11 16 -0.2164 -4.6419 2.9744 12 6 2.3149 -2.8025 0.0100 13 6 1.8111 -2.1552 -1.2843 14 1 0.7481 -2.3624 -1.4077 15 6 2.5859 -2.7149 -2.4790 16 7 2.0241 -0.7027 -1.1939 17 6 2.6650 -0.0227 -2.1948 18 1 3.3962 -0.5277 -2.8086 19 6 2.3748 1.3159 -2.4207 20 7 1.2742 1.8430 -1.9276 21 14 3.5465 2.3691 -3.4245 22 1 4.7021 1.5451 -3.8613 23 1 2.8374 2.8996 -4.6166 24 1 4.0315 3.4998 -2.5930 25 1 -0.3633 0.5062 0.8944 26 1 -0.3634 0.5213 -0.8856 27 1 -0.3633 -1.0277 -0.0086 28 1 1.5993 -0.2916 2.1357 29 1 3.1298 -0.6416 1.2961 30 1 3.0803 -2.9367 2.5105 31 1 1.5965 -2.2948 3.2553 32 1 2.9847 -5.3143 1.5029 33 1 1.5934 -7.4414 1.6507 34 1 -0.7068 -7.1153 2.6715 35 1 3.3961 -2.6831 0.0796 36 1 2.0652 -3.8636 0.0072 37 1 3.6384 -2.4468 -2.3873 38 1 2.4878 -3.8002 -2.4994 39 1 2.1834 -2.2962 -3.4015 40 1 1.1059 2.7933 -2.0246 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000878775150.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:14:53 Heat of formation + Delta-G solvation = 52.875031 kcal Electronic energy + Delta-G solvation = -20680.324494 eV Core-core repulsion = 17815.014467 eV Total energy + Delta-G solvation = -2865.310027 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 280.130 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.30452 -38.59506 -36.33433 -34.24326 -33.37087 -31.11721 -29.56348 -27.84155 -27.10231 -25.89588 -24.33664 -22.91017 -22.35465 -20.44039 -19.92411 -18.04352 -17.97544 -17.04428 -16.37408 -16.34907 -15.93309 -15.67026 -15.26522 -14.98109 -14.56418 -14.05513 -13.64599 -13.61210 -13.51947 -13.31665 -13.13222 -12.87977 -12.76154 -12.75209 -12.30974 -12.26165 -12.18487 -12.12985 -11.88282 -11.62924 -11.55005 -11.24570 -10.97954 -10.44838 -9.58144 -9.29790 -9.16339 -8.53617 -7.73436 -5.21109 0.15311 0.82494 1.22622 1.47045 1.50574 1.58870 1.89950 2.56648 3.12055 3.37728 3.63088 3.87679 4.20599 4.26214 4.31015 4.33866 4.51160 4.60189 4.62257 4.65463 4.76116 4.77258 4.81683 4.87050 4.89796 4.99137 5.09262 5.24758 5.27862 5.32857 5.42392 5.45433 5.54503 5.66069 5.71643 5.79121 6.01521 6.23246 6.26954 6.50240 7.27007 7.96682 8.51274 9.28668 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.032240 B = 0.004793 C = 0.004495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.271804 B = 5840.808785 C = 6227.354799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.197 3.803 3 H 0.056 0.944 4 C 0.055 3.945 5 N -0.531 5.531 6 C 0.123 3.877 7 C -0.172 4.172 8 C -0.144 4.144 9 C -0.140 4.140 10 C -0.218 4.218 11 S 0.093 5.907 12 C 0.062 3.938 13 C 0.165 3.835 14 H 0.011 0.989 15 C -0.127 4.127 16 N -0.599 5.599 17 C -0.249 4.249 18 H 0.071 0.929 19 C -0.047 4.047 20 N -0.921 5.921 21 Si 0.952 3.048 22 H -0.271 1.271 23 H -0.298 1.298 24 H -0.294 1.294 25 H 0.035 0.965 26 H 0.038 0.962 27 H 0.033 0.967 28 H 0.078 0.922 29 H 0.019 0.981 30 H 0.053 0.947 31 H 0.087 0.913 32 H 0.142 0.858 33 H 0.160 0.840 34 H 0.185 0.815 35 H 0.022 0.978 36 H 0.084 0.916 37 H 0.049 0.951 38 H 0.072 0.928 39 H 0.041 0.959 40 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.345 -15.187 10.364 18.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.090 3.910 3 H 0.074 0.926 4 C -0.074 4.074 5 N -0.255 5.255 6 C -0.006 4.006 7 C -0.290 4.290 8 C -0.175 4.175 9 C -0.171 4.171 10 C -0.353 4.353 11 S 0.356 5.644 12 C -0.067 4.067 13 C 0.059 3.941 14 H 0.029 0.971 15 C -0.185 4.185 16 N -0.322 5.322 17 C -0.379 4.379 18 H 0.088 0.912 19 C -0.243 4.243 20 N -0.567 5.567 21 Si 0.782 3.218 22 H -0.195 1.195 23 H -0.226 1.226 24 H -0.221 1.221 25 H 0.054 0.946 26 H 0.057 0.943 27 H 0.052 0.948 28 H 0.097 0.903 29 H 0.037 0.963 30 H 0.071 0.929 31 H 0.105 0.895 32 H 0.160 0.840 33 H 0.177 0.823 34 H 0.202 0.798 35 H 0.040 0.960 36 H 0.102 0.898 37 H 0.068 0.932 38 H 0.091 0.909 39 H 0.061 0.939 40 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -1.412 -14.267 10.879 17.997 hybrid contribution 2.282 0.389 -1.226 2.620 sum 0.870 -13.877 9.653 16.927 Atomic orbital electron populations 1.21740 0.97852 0.98727 0.99397 1.20252 0.92579 0.94378 0.83762 0.92606 1.22591 0.97073 0.88196 0.99527 1.61874 1.59304 1.01894 1.02478 1.20527 0.97782 0.89377 0.92865 1.24375 0.98175 0.98840 1.07597 1.20352 1.02290 0.91885 1.02989 1.20369 0.94083 1.00109 1.02494 1.25935 1.02133 0.99184 1.08096 1.84338 1.15301 1.03713 1.60999 1.22503 0.95183 0.98317 0.90733 1.20625 0.95739 0.84311 0.93392 0.97127 1.21690 0.99725 0.99826 0.97303 1.44511 1.66926 1.02489 1.18298 1.19507 1.14230 0.93892 1.10316 0.91188 1.25630 0.97470 1.00211 1.00975 1.70223 1.23909 1.11059 1.51545 0.85438 0.79237 0.79087 0.78031 1.19524 1.22551 1.22119 0.94588 0.94250 0.94759 0.90336 0.96295 0.92856 0.89513 0.83985 0.82273 0.79809 0.95970 0.89773 0.93240 0.90873 0.93943 0.94658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.50 8.98 71.98 0.65 -4.85 16 2 C 0.20 9.28 2.35 44.96 0.11 9.39 16 3 H 0.06 3.02 6.25 -2.39 -0.01 3.01 16 4 C 0.06 2.10 5.01 86.38 0.43 2.53 16 5 N -0.53 -18.12 4.12 -899.82 -3.71 -21.83 16 6 C 0.12 3.36 5.46 85.56 0.47 3.83 16 7 C -0.17 -4.34 5.44 24.59 0.13 -4.21 16 8 C -0.14 -3.23 8.44 21.22 0.18 -3.05 16 9 C -0.14 -2.70 10.18 21.22 0.22 -2.49 16 10 C -0.22 -4.15 11.23 66.72 0.75 -3.40 16 11 S 0.09 2.17 23.33 -56.49 -1.32 0.85 16 12 C 0.06 2.16 4.72 86.38 0.41 2.57 16 13 C 0.17 6.92 3.24 44.96 0.15 7.06 16 14 H 0.01 0.51 7.60 -2.38 -0.02 0.49 16 15 C -0.13 -4.73 7.96 71.98 0.57 -4.16 16 16 N -0.60 -29.45 2.72 -650.64 -1.77 -31.23 16 17 C -0.25 -13.37 8.71 84.04 0.73 -12.64 16 18 H 0.07 3.68 6.17 -2.91 -0.02 3.66 16 19 C -0.05 -2.60 4.91 84.86 0.42 -2.18 16 20 N -0.92 -53.26 9.81 21.65 0.21 -53.05 16 21 Si 0.95 44.88 29.59 68.60 2.03 46.91 16 22 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 23 H -0.30 -14.24 7.11 99.48 0.71 -13.53 16 24 H -0.29 -13.89 7.11 99.48 0.71 -13.18 16 25 H 0.04 1.50 8.14 -2.38 -0.02 1.48 16 26 H 0.04 2.10 6.77 -2.39 -0.02 2.08 16 27 H 0.03 1.55 7.06 -2.38 -0.02 1.53 16 28 H 0.08 2.68 7.99 -2.39 -0.02 2.66 16 29 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.05 1.38 8.12 -2.39 -0.02 1.36 16 31 H 0.09 2.22 7.97 -2.39 -0.02 2.20 16 32 H 0.14 2.93 8.01 -2.91 -0.02 2.90 16 33 H 0.16 2.24 8.06 -2.91 -0.02 2.21 16 34 H 0.18 2.47 8.06 -2.91 -0.02 2.45 16 35 H 0.02 0.79 8.14 -2.39 -0.02 0.78 16 36 H 0.08 2.62 5.86 -2.38 -0.01 2.61 16 37 H 0.05 1.86 7.32 -2.39 -0.02 1.84 16 38 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 39 H 0.04 1.70 7.79 -2.38 -0.02 1.68 16 40 H 0.24 13.84 8.32 -92.71 -0.77 13.07 16 Total: -1.00 -60.93 321.47 1.66 -59.27 By element: Atomic # 1 Polarization: 9.66 SS G_CDS: 1.01 Total: 10.67 kcal Atomic # 6 Polarization: -16.81 SS G_CDS: 5.21 Total: -11.60 kcal Atomic # 7 Polarization: -100.83 SS G_CDS: -5.27 Total: -106.10 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.91 kcal Atomic # 16 Polarization: 2.17 SS G_CDS: -1.32 Total: 0.85 kcal Total: -60.93 1.66 -59.27 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878775150.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.149 kcal (2) G-P(sol) polarization free energy of solvation -60.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.273 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds