Wall clock time and date at job start Tue Mar 31 2020 01:39:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53002 * 109.46830 * 2 1 4 4 C 1.50694 * 109.47451 * 239.99984 * 2 1 3 5 5 H 1.07995 * 119.99869 * 240.00251 * 4 2 1 6 6 C 1.37875 * 120.00109 * 59.99249 * 4 2 1 7 7 N 1.31515 * 119.99853 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 120.00041 * 179.97438 * 6 4 2 9 9 H 1.48507 * 109.46689 * 60.00692 * 8 6 4 10 10 H 1.48500 * 109.47184 * 180.02562 * 8 6 4 11 11 H 1.48499 * 109.47656 * 300.00843 * 8 6 4 12 12 C 1.52998 * 109.47070 * 119.99169 * 2 1 3 13 13 N 1.46497 * 109.47514 * 300.00474 * 12 2 1 14 14 C 1.34778 * 119.99910 * 179.97438 * 13 12 2 15 15 O 1.21281 * 120.00276 * 359.97438 * 14 13 12 16 16 C 1.50694 * 120.00045 * 180.02562 * 14 13 12 17 17 C 1.50698 * 109.47675 * 180.02562 * 16 14 13 18 18 C 1.38232 * 119.59260 * 124.99570 * 17 16 14 19 19 C 1.38596 * 119.18886 * 180.02562 * 18 17 16 20 20 C 1.38879 * 118.39652 * 0.25621 * 19 18 17 21 21 F 1.35106 * 120.44068 * 179.74732 * 20 19 18 22 22 C 1.38422 * 119.11596 * 359.51901 * 20 19 18 23 23 N 1.31848 * 119.58665 * 305.02401 * 17 16 14 24 24 H 1.09000 * 109.46985 * 300.00111 * 1 2 3 25 25 H 1.08996 * 109.46854 * 60.00725 * 1 2 3 26 26 H 1.09001 * 109.46881 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.46951 * 179.97438 * 3 2 1 28 28 H 1.09004 * 109.47036 * 299.99887 * 3 2 1 29 29 H 1.09002 * 109.47439 * 59.99197 * 3 2 1 30 30 H 0.97002 * 119.99471 * 179.97438 * 7 6 4 31 31 H 1.08997 * 109.47106 * 180.02562 * 12 2 1 32 32 H 1.09001 * 109.46714 * 60.00577 * 12 2 1 33 33 H 0.96996 * 120.00145 * 359.97438 * 13 12 2 34 34 H 1.09006 * 109.47563 * 59.99977 * 16 14 13 35 35 H 1.09001 * 109.46967 * 300.00081 * 16 14 13 36 36 H 1.08002 * 120.40687 * 0.02599 * 18 17 16 37 37 H 1.08002 * 120.79700 * 179.97438 * 19 18 17 38 38 H 1.07999 * 119.63454 * 180.20814 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0325 -0.7104 -1.2304 5 1 2.6533 -1.5884 -1.1312 6 6 1.6993 -0.2394 -2.4827 7 7 0.9435 0.8300 -2.6034 8 14 2.3227 -1.1196 -4.0078 9 1 1.8282 -2.5199 -4.0080 10 1 1.8280 -0.4194 -5.2204 11 1 3.8077 -1.1190 -4.0076 12 6 2.0400 -0.7211 1.2493 13 7 1.5517 -0.0304 2.4454 14 6 1.8769 -0.4911 3.6696 15 8 2.5734 -1.4777 3.7810 16 6 1.3740 0.2190 4.9000 17 6 1.8765 -0.4912 6.1305 18 6 2.5825 0.2154 7.0860 19 6 3.0411 -0.4461 8.2142 20 6 2.7754 -1.8037 8.3375 21 9 3.2075 -2.4904 9.4179 22 6 2.0579 -2.4428 7.3412 23 7 1.6376 -1.7790 6.2821 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 3.1300 1.4426 0.0005 28 1 1.6766 1.9564 -0.8900 29 1 1.6765 1.9565 0.8899 30 1 0.7094 1.1615 -3.4844 31 1 3.1300 -0.7207 1.2496 32 1 1.6768 -1.7488 1.2494 33 1 0.9943 0.7584 2.3564 34 1 0.2840 0.2189 4.8996 35 1 1.7373 1.2467 4.9003 36 1 2.7744 1.2702 6.9550 37 1 3.5957 0.0804 8.9769 38 1 1.8437 -3.4976 7.4301 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000880269710.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:39:47 Heat of formation + Delta-G solvation = -74.568773 kcal Electronic energy + Delta-G solvation = -21201.394972 eV Core-core repulsion = 17764.345391 eV Total energy + Delta-G solvation = -3437.049581 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.133 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -49.98993 -41.41044 -40.25158 -38.05167 -34.93392 -33.78487 -33.45258 -32.61302 -29.26178 -27.52544 -27.38174 -26.42973 -24.92664 -23.52513 -21.43422 -20.56434 -18.71983 -18.51198 -18.07903 -17.59537 -17.35366 -16.80347 -16.54447 -16.32065 -16.10634 -15.07414 -14.97531 -14.93114 -14.73142 -14.45966 -14.10584 -13.93505 -13.84029 -13.24217 -13.10344 -13.04202 -12.87380 -12.61613 -12.60830 -12.21214 -12.12419 -11.45198 -11.24150 -10.91484 -10.83137 -10.67473 -10.47211 -10.38199 -9.88161 -9.80028 -8.01623 -6.17175 -0.12067 0.17096 1.43791 1.45068 1.51632 1.82073 2.30299 2.48218 2.76516 2.99758 3.21780 3.30454 3.65163 3.80069 3.91199 4.06212 4.35805 4.49378 4.50440 4.57191 4.66673 4.75253 4.80810 4.89664 4.99177 5.04249 5.09811 5.15286 5.23278 5.41557 5.63571 5.66215 5.68384 5.70768 6.19190 6.24922 6.45776 6.77339 6.87175 6.92468 7.45490 7.50465 8.96840 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.042586 B = 0.003063 C = 0.002965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 657.341222 B = 9140.298064 C = 9440.124142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.052 3.948 3 C -0.120 4.120 4 C -0.533 4.533 5 H 0.041 0.959 6 C 0.030 3.970 7 N -0.898 5.898 8 Si 0.942 3.058 9 H -0.279 1.279 10 H -0.281 1.281 11 H -0.277 1.277 12 C 0.151 3.849 13 N -0.711 5.711 14 C 0.506 3.494 15 O -0.584 6.584 16 C -0.085 4.085 17 C 0.114 3.886 18 C -0.127 4.127 19 C -0.105 4.105 20 C 0.031 3.969 21 F -0.136 7.136 22 C 0.061 3.939 23 N -0.469 5.469 24 H 0.042 0.958 25 H 0.062 0.938 26 H 0.014 0.986 27 H 0.017 0.983 28 H 0.061 0.939 29 H 0.043 0.957 30 H 0.261 0.739 31 H 0.034 0.966 32 H 0.030 0.970 33 H 0.411 0.589 34 H 0.134 0.866 35 H 0.154 0.846 36 H 0.186 0.814 37 H 0.179 0.821 38 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.083 4.476 20.483 20.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.052 3.948 3 C -0.178 4.178 4 C -0.571 4.571 5 H 0.059 0.941 6 C -0.170 4.170 7 N -0.536 5.536 8 Si 0.769 3.231 9 H -0.204 1.204 10 H -0.207 1.207 11 H -0.203 1.203 12 C 0.027 3.973 13 N -0.364 5.364 14 C 0.293 3.707 15 O -0.464 6.464 16 C -0.124 4.124 17 C -0.024 4.024 18 C -0.146 4.146 19 C -0.131 4.131 20 C 0.010 3.990 21 F -0.115 7.115 22 C -0.098 4.098 23 N -0.177 5.177 24 H 0.060 0.940 25 H 0.081 0.919 26 H 0.033 0.967 27 H 0.036 0.964 28 H 0.080 0.920 29 H 0.062 0.938 30 H 0.070 0.930 31 H 0.052 0.948 32 H 0.048 0.952 33 H 0.248 0.752 34 H 0.152 0.848 35 H 0.172 0.828 36 H 0.204 0.796 37 H 0.196 0.804 38 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -0.133 3.434 19.786 20.082 hybrid contribution 0.713 -0.426 -0.460 0.950 sum 0.580 3.008 19.326 19.567 Atomic orbital electron populations 1.21676 0.97092 0.98517 1.00597 1.18340 0.93242 0.93162 0.90105 1.21666 0.97854 0.97631 1.00658 1.21283 1.31797 1.12191 0.91868 0.94087 1.25418 0.95144 0.95599 1.00835 1.69893 1.36902 1.23176 1.23652 0.85864 0.78643 0.78819 0.79758 1.20436 1.20655 1.20298 1.21173 0.96707 0.94840 0.84625 1.46077 1.53146 1.32091 1.05078 1.21055 0.79986 0.84334 0.85355 1.90691 1.40132 1.28227 1.87359 1.20745 1.04675 1.00715 0.86293 1.21103 0.95743 0.89647 0.95894 1.22275 0.96337 1.03495 0.92517 1.22003 0.99289 0.91952 0.99892 1.18978 1.01177 0.92322 0.86565 1.91504 1.87868 1.79616 1.52493 1.23058 0.96105 1.01707 0.88890 1.67472 1.19948 1.09881 1.20430 0.93955 0.91912 0.96701 0.96427 0.91976 0.93805 0.92993 0.94754 0.95153 0.75150 0.84790 0.82797 0.79642 0.80357 0.81262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.30 8.08 71.98 0.58 -4.71 16 2 C 0.05 2.38 0.50 -52.93 -0.03 2.36 16 3 C -0.12 -5.17 8.08 71.98 0.58 -4.59 16 4 C -0.53 -28.38 8.01 25.60 0.21 -28.18 16 5 H 0.04 2.25 7.74 -2.91 -0.02 2.22 16 6 C 0.03 1.58 5.15 84.65 0.44 2.02 16 7 N -0.90 -47.58 9.35 21.45 0.20 -47.38 16 8 Si 0.94 42.74 29.54 68.60 2.03 44.76 16 9 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 10 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 11 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 12 C 0.15 6.41 4.50 86.38 0.39 6.79 16 13 N -0.71 -23.12 4.96 -463.08 -2.30 -25.42 16 14 C 0.51 16.09 7.76 87.65 0.68 16.77 16 15 O -0.58 -24.65 15.33 -3.03 -0.05 -24.70 16 16 C -0.08 -1.63 6.10 29.10 0.18 -1.46 16 17 C 0.11 2.59 5.76 42.55 0.25 2.83 16 18 C -0.13 -1.94 9.71 22.35 0.22 -1.72 16 19 C -0.11 -1.63 10.16 22.51 0.23 -1.40 16 20 C 0.03 0.64 7.35 22.47 0.17 0.81 16 21 F -0.14 -2.82 17.28 44.97 0.78 -2.04 16 22 C 0.06 1.50 11.17 84.73 0.95 2.44 16 23 N -0.47 -13.42 9.22 -183.71 -1.69 -15.12 16 24 H 0.04 1.50 6.86 -2.39 -0.02 1.49 16 25 H 0.06 3.06 6.07 -2.39 -0.01 3.04 16 26 H 0.01 0.64 8.14 -2.39 -0.02 0.62 16 27 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 28 H 0.06 2.99 6.07 -2.38 -0.01 2.98 16 29 H 0.04 1.51 6.86 -2.39 -0.02 1.50 16 30 H 0.26 13.33 8.31 -92.71 -0.77 12.56 16 31 H 0.03 1.57 8.14 -2.39 -0.02 1.55 16 32 H 0.03 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.41 10.93 6.16 -92.71 -0.57 10.36 16 34 H 0.13 2.04 8.14 -2.38 -0.02 2.02 16 35 H 0.15 1.57 7.87 -2.39 -0.02 1.55 16 36 H 0.19 1.24 7.95 -2.91 -0.02 1.22 16 37 H 0.18 1.53 8.06 -2.91 -0.02 1.50 16 38 H 0.17 3.60 8.06 -2.91 -0.02 3.57 16 Total: -1.00 -69.32 320.06 4.30 -65.02 By element: Atomic # 1 Polarization: 12.39 SS G_CDS: 0.51 Total: 12.90 kcal Atomic # 6 Polarization: -12.86 SS G_CDS: 4.83 Total: -8.03 kcal Atomic # 7 Polarization: -84.12 SS G_CDS: -3.79 Total: -87.91 kcal Atomic # 8 Polarization: -24.65 SS G_CDS: -0.05 Total: -24.70 kcal Atomic # 9 Polarization: -2.82 SS G_CDS: 0.78 Total: -2.04 kcal Atomic # 14 Polarization: 42.74 SS G_CDS: 2.03 Total: 44.76 kcal Total: -69.32 4.30 -65.02 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880269710.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.550 kcal (2) G-P(sol) polarization free energy of solvation -69.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.019 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds