Wall clock time and date at job start Tue Mar 31 2020 02:59:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46501 * 119.99968 * 2 1 4 4 C 1.52998 * 109.47438 * 270.00474 * 3 2 1 5 5 C 1.53007 * 109.46801 * 179.97438 * 4 3 2 6 6 F 1.39907 * 109.46500 * 180.02562 * 5 4 3 7 7 C 1.34774 * 120.00271 * 180.02562 * 2 1 3 8 8 O 1.21587 * 120.00278 * 179.97438 * 7 2 1 9 9 N 1.34781 * 120.00069 * 359.97438 * 7 2 1 10 10 C 1.39232 * 120.00239 * 185.18688 * 9 7 2 11 11 C 1.39481 * 119.83475 * 324.05410 * 10 9 7 12 12 C 1.36376 * 120.16991 * 180.25767 * 11 10 9 13 13 C 1.40869 * 119.82790 * 359.49645 * 12 11 10 14 14 C 1.41161 * 120.16220 * 180.23294 * 13 12 11 15 15 H 1.07998 * 119.99851 * 204.99764 * 14 13 12 16 16 C 1.39893 * 119.99953 * 25.00136 * 14 13 12 17 17 N 1.30872 * 120.00102 * 17.68586 * 16 14 13 18 18 Si 1.86794 * 119.99618 * 197.68290 * 16 14 13 19 19 H 1.48507 * 109.46967 * 94.98310 * 18 16 14 20 20 H 1.48505 * 109.47436 * 214.98006 * 18 16 14 21 21 H 1.48501 * 109.47709 * 334.98092 * 18 16 14 22 22 C 1.40862 * 119.66944 * 0.51962 * 13 12 11 23 23 C 1.36377 * 119.83298 * 359.73462 * 22 13 12 24 24 H 1.08999 * 109.46915 * 269.99110 * 1 2 3 25 25 H 1.08996 * 109.47548 * 29.99154 * 1 2 3 26 26 H 1.08998 * 109.47114 * 149.99751 * 1 2 3 27 27 H 1.09006 * 109.46700 * 30.00870 * 3 2 1 28 28 H 1.09005 * 109.47357 * 150.00361 * 3 2 1 29 29 H 1.08999 * 109.47093 * 299.99894 * 4 3 2 30 30 H 1.08998 * 109.47201 * 60.00268 * 4 3 2 31 31 H 1.08999 * 109.47408 * 299.99943 * 5 4 3 32 32 H 1.08998 * 109.46827 * 60.00280 * 5 4 3 33 33 H 0.96996 * 119.99321 * 5.19074 * 9 7 2 34 34 H 1.08000 * 119.91738 * 359.97206 * 11 10 9 35 35 H 1.08003 * 120.08437 * 179.74426 * 12 11 10 36 36 H 0.97000 * 120.00383 * 180.02562 * 17 16 14 37 37 H 1.08006 * 120.08282 * 179.71065 * 22 13 12 38 38 H 1.07998 * 119.91776 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4524 1.7105 -1.4425 5 6 3.2169 3.0359 -1.4423 6 9 3.4494 3.4402 -2.7613 7 6 2.1389 -1.1671 -0.0005 8 8 3.3548 -1.1671 -0.0010 9 7 1.4651 -2.3344 -0.0005 10 6 2.1570 -3.5378 0.1079 11 6 3.4038 -3.6786 -0.5013 12 6 4.0851 -4.8560 -0.4039 13 6 3.5314 -5.9279 0.3234 14 6 4.2327 -7.1480 0.4329 15 1 3.6939 -8.0662 0.6146 16 6 5.6258 -7.1678 0.3062 17 7 6.3102 -6.0596 0.4332 18 14 6.5088 -8.7762 -0.0440 19 1 6.7282 -8.9121 -1.5065 20 1 7.8186 -8.7844 0.6558 21 1 5.6819 -9.9107 0.4401 22 6 2.2716 -5.7781 0.9355 23 6 1.5998 -4.5964 0.8250 24 1 -0.3633 -0.0002 1.0277 25 1 -0.3634 0.8900 -0.5137 26 1 -0.3633 -0.8899 -0.5139 27 1 1.6084 2.0283 0.5140 28 1 3.1500 1.1384 0.5138 29 1 3.0415 0.9510 -1.9564 30 1 1.5000 1.8410 -1.9562 31 1 2.6274 3.7953 -0.9285 32 1 4.1693 2.9059 -0.9284 33 1 0.4980 -2.3361 -0.0762 34 1 3.8286 -2.8548 -1.0555 35 1 5.0485 -4.9649 -0.8796 36 1 7.2761 -6.0733 0.3450 37 1 1.8387 -6.5971 1.4908 38 1 0.6336 -4.4802 1.2934 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000887214338.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:59:40 Heat of formation + Delta-G solvation = -57.237379 kcal Electronic energy + Delta-G solvation = -21220.107471 eV Core-core repulsion = 17783.809436 eV Total energy + Delta-G solvation = -3436.298035 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.133 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -47.72910 -40.11594 -37.61745 -35.83582 -34.49387 -33.30374 -32.29525 -29.44102 -28.89852 -27.25785 -25.85460 -24.35490 -22.22192 -21.27139 -20.79001 -19.25407 -18.00201 -17.27170 -16.70697 -16.33675 -15.94663 -15.78970 -15.23829 -14.74853 -14.54071 -14.07403 -13.90926 -13.44440 -13.37396 -12.90925 -12.65096 -12.51675 -12.23504 -12.02047 -11.79254 -11.54432 -11.38328 -11.26949 -11.10711 -10.90096 -10.76888 -10.46869 -9.95438 -9.85326 -9.47934 -9.16214 -8.67750 -8.58735 -7.47277 -6.96423 -6.69541 -4.24965 2.68485 2.88917 3.10357 3.10828 3.14168 3.19631 3.67609 3.96663 4.28860 4.53716 4.59960 4.68927 4.75453 4.91862 4.97350 5.03040 5.28980 5.40185 5.50520 5.62907 5.73817 5.80888 6.05309 6.17910 6.43205 6.48970 6.85090 6.90838 7.09586 7.14032 7.31744 7.35373 7.66657 7.84830 8.05093 8.10797 8.30719 8.47033 8.68263 8.93082 8.95962 9.13850 10.23431 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.024493 B = 0.003572 C = 0.003190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1142.899357 B = 7836.397625 C = 8774.870560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.640 5.640 3 C 0.139 3.861 4 C -0.171 4.171 5 C 0.066 3.934 6 F -0.220 7.220 7 C 0.695 3.305 8 O -0.571 6.571 9 N -0.666 5.666 10 C 0.008 3.992 11 C -0.085 4.085 12 C -0.157 4.157 13 C 0.106 3.894 14 C -0.461 4.461 15 H 0.078 0.922 16 C 0.075 3.925 17 N -0.789 5.789 18 Si 0.908 3.092 19 H -0.268 1.268 20 H -0.278 1.278 21 H -0.262 1.262 22 C -0.216 4.216 23 C -0.105 4.105 24 H 0.054 0.946 25 H 0.070 0.930 26 H 0.066 0.934 27 H 0.075 0.925 28 H 0.088 0.912 29 H 0.082 0.918 30 H 0.071 0.929 31 H 0.073 0.927 32 H 0.078 0.922 33 H 0.390 0.610 34 H 0.107 0.893 35 H 0.119 0.881 36 H 0.281 0.719 37 H 0.095 0.905 38 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.527 13.317 -1.316 16.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.379 5.379 3 C 0.015 3.985 4 C -0.211 4.211 5 C 0.010 3.990 6 F -0.201 7.201 7 C 0.397 3.603 8 O -0.447 6.447 9 N -0.313 5.313 10 C -0.085 4.085 11 C -0.105 4.105 12 C -0.177 4.177 13 C 0.103 3.897 14 C -0.491 4.491 15 H 0.096 0.904 16 C -0.143 4.143 17 N -0.414 5.414 18 Si 0.732 3.268 19 H -0.194 1.194 20 H -0.203 1.203 21 H -0.186 1.186 22 C -0.236 4.236 23 C -0.126 4.126 24 H 0.072 0.928 25 H 0.089 0.911 26 H 0.084 0.916 27 H 0.094 0.906 28 H 0.107 0.893 29 H 0.100 0.900 30 H 0.090 0.910 31 H 0.091 0.909 32 H 0.096 0.904 33 H 0.225 0.775 34 H 0.125 0.875 35 H 0.137 0.863 36 H 0.092 0.908 37 H 0.113 0.887 38 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -8.386 13.417 -1.304 15.876 hybrid contribution -0.149 -0.602 -0.154 0.639 sum -8.535 12.815 -1.457 15.466 Atomic orbital electron populations 1.21676 0.80286 1.02703 1.01561 1.47015 1.06024 1.04965 1.79893 1.21077 0.98210 0.83998 0.95250 1.22592 1.01606 0.97388 0.99482 1.21893 1.01584 0.96368 0.79158 1.92765 1.96205 1.92021 1.39153 1.15993 0.85542 0.80267 0.78518 1.90927 1.11344 1.85568 1.56902 1.42225 1.09086 1.03808 1.76170 1.17006 0.96761 0.84938 1.09777 1.20571 0.93822 0.97291 0.98812 1.21000 1.00977 0.93205 1.02500 1.17662 0.90699 0.93038 0.88304 1.19547 0.91390 0.94731 1.43385 0.90421 1.25927 0.98163 0.97854 0.92405 1.69868 1.08642 1.28565 1.34301 0.86310 0.78786 0.82276 0.79387 1.19365 1.20325 1.18612 1.20525 0.98916 0.96860 1.07340 1.20025 0.98867 0.94226 0.99463 0.92753 0.91143 0.91559 0.90626 0.89331 0.89974 0.90989 0.90873 0.90394 0.77532 0.87514 0.86336 0.90837 0.88691 0.89379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.71 10.25 59.84 0.61 1.32 16 2 N -0.64 -8.38 2.87 -187.35 -0.54 -8.91 16 3 C 0.14 1.50 5.41 -4.04 -0.02 1.48 16 4 C -0.17 -1.80 5.99 -26.73 -0.16 -1.96 16 5 C 0.07 0.59 7.55 37.16 0.28 0.87 16 6 F -0.22 -2.65 17.36 2.25 0.04 -2.61 16 7 C 0.69 12.83 8.11 -86.92 -0.71 12.13 16 8 O -0.57 -13.09 13.36 5.29 0.07 -13.02 16 9 N -0.67 -12.15 5.18 -14.10 -0.07 -12.22 16 10 C 0.01 0.18 6.30 -83.57 -0.53 -0.35 16 11 C -0.08 -2.17 8.61 -39.79 -0.34 -2.51 16 12 C -0.16 -4.28 8.64 -39.26 -0.34 -4.62 16 13 C 0.11 2.87 5.57 -106.80 -0.59 2.27 16 14 C -0.46 -12.38 9.03 -37.85 -0.34 -12.72 16 15 H 0.08 1.99 7.90 -52.49 -0.41 1.57 16 16 C 0.07 1.91 5.13 -17.34 -0.09 1.82 16 17 N -0.79 -21.11 10.97 55.54 0.61 -20.50 16 18 Si 0.91 18.95 29.59 -169.99 -5.03 13.92 16 19 H -0.27 -5.54 7.11 56.52 0.40 -5.13 16 20 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 21 H -0.26 -5.37 7.11 56.52 0.40 -4.97 16 22 C -0.22 -5.31 9.74 -39.26 -0.38 -5.69 16 23 C -0.11 -2.35 9.90 -39.79 -0.39 -2.74 16 24 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.07 0.45 8.07 -51.93 -0.42 0.03 16 26 H 0.07 0.55 6.29 -51.93 -0.33 0.22 16 27 H 0.08 0.57 8.07 -51.93 -0.42 0.15 16 28 H 0.09 1.13 7.42 -51.93 -0.39 0.74 16 29 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 30 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 31 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 32 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.39 5.58 6.51 -40.82 -0.27 5.31 16 34 H 0.11 2.77 6.24 -52.49 -0.33 2.44 16 35 H 0.12 3.36 6.18 -52.48 -0.32 3.03 16 36 H 0.28 6.84 8.30 -40.82 -0.34 6.50 16 37 H 0.09 2.17 8.06 -52.48 -0.42 1.74 16 38 H 0.09 1.66 8.06 -52.49 -0.42 1.24 16 LS Contribution 322.71 15.07 4.86 4.86 Total: -1.00 -32.31 322.71 -8.04 -40.35 By element: Atomic # 1 Polarization: 13.80 SS G_CDS: -4.98 Total: 8.82 kcal Atomic # 6 Polarization: -7.69 SS G_CDS: -3.00 Total: -10.69 kcal Atomic # 7 Polarization: -41.64 SS G_CDS: 0.00 Total: -41.64 kcal Atomic # 8 Polarization: -13.09 SS G_CDS: 0.07 Total: -13.02 kcal Atomic # 9 Polarization: -2.65 SS G_CDS: 0.04 Total: -2.61 kcal Atomic # 14 Polarization: 18.95 SS G_CDS: -5.03 Total: 13.92 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -32.31 -8.04 -40.35 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000887214338.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.882 kcal (2) G-P(sol) polarization free energy of solvation -32.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds