Wall clock time and date at job start Tue Mar 31 2020 02:49:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.21293 * 119.99714 * 2 1 4 4 C 1.46842 * 120.00323 * 180.26991 * 2 1 3 5 5 C 1.40527 * 121.02447 * 85.54170 * 4 2 1 6 6 F 1.35102 * 120.50947 * 359.97438 * 5 4 2 7 7 C 1.38232 * 118.98107 * 180.02562 * 5 4 2 8 8 N 1.31876 * 121.12849 * 0.02562 * 7 5 4 9 9 C 1.31569 * 122.30544 * 359.97438 * 8 7 5 10 10 C 1.39153 * 120.86417 * 359.71435 * 9 8 7 11 11 N 1.38727 * 120.61155 * 180.28620 * 10 9 8 12 12 C 1.46497 * 119.99883 * 5.40203 * 11 10 9 13 13 C 1.53004 * 109.47133 * 179.97438 * 12 11 10 14 14 C 1.53004 * 109.47137 * 299.99972 * 13 12 11 15 15 C 1.53004 * 109.47030 * 59.99580 * 13 12 11 16 16 C 1.50700 * 109.47264 * 179.97438 * 13 12 11 17 17 H 1.07993 * 120.00170 * 354.78721 * 16 13 12 18 18 C 1.37882 * 119.99563 * 174.78387 * 16 13 12 19 19 N 1.31517 * 119.99389 * 199.31839 * 18 16 13 20 20 Si 1.86796 * 120.00368 * 19.32231 * 18 16 13 21 21 H 1.48502 * 109.47123 * 84.28525 * 20 18 16 22 22 H 1.48494 * 109.47022 * 204.28640 * 20 18 16 23 23 H 1.48505 * 109.46985 * 324.28533 * 20 18 16 24 24 H 1.08998 * 109.47477 * 0.02562 * 1 2 3 25 25 H 1.09006 * 109.46761 * 119.99874 * 1 2 3 26 26 H 1.08999 * 109.47035 * 239.99735 * 1 2 3 27 27 H 1.07997 * 119.43885 * 179.97438 * 7 5 4 28 28 H 1.08000 * 119.56426 * 180.02562 * 9 8 7 29 29 H 0.96996 * 119.99717 * 185.39363 * 11 10 9 30 30 H 1.08998 * 109.47382 * 299.99288 * 12 11 10 31 31 H 1.09000 * 109.47687 * 59.99584 * 12 11 10 32 32 H 1.08999 * 109.46929 * 67.80022 * 14 13 12 33 33 H 1.08997 * 109.47205 * 187.80051 * 14 13 12 34 34 H 1.09000 * 109.47191 * 307.80244 * 14 13 12 35 35 H 1.08999 * 109.46675 * 60.00078 * 15 13 12 36 36 H 1.08996 * 109.46785 * 179.97438 * 15 13 12 37 37 H 1.08993 * 109.47077 * 300.00187 * 15 13 12 38 38 H 0.97007 * 119.99664 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0505 0.0000 4 6 2.2413 -1.2716 -0.0060 5 6 2.5224 -1.9400 -1.2098 6 9 2.1200 -1.4232 -2.3914 7 6 3.2160 -3.1349 -1.1662 8 7 3.6133 -3.6512 -0.0196 9 6 3.3760 -3.0662 1.1348 10 6 2.6904 -1.8567 1.1945 11 7 2.4482 -1.2415 2.4141 12 6 3.0163 -1.8017 3.6427 13 6 2.6008 -0.9392 4.8362 14 6 3.1181 0.4872 4.6394 15 6 1.0746 -0.9179 4.9434 16 6 3.1846 -1.5159 6.1002 17 1 3.7201 -2.4532 6.0691 18 6 3.0351 -0.8467 7.2964 19 7 3.8335 -1.1179 8.3058 20 14 1.6986 0.4448 7.4835 21 1 0.4175 -0.2165 7.8395 22 1 2.0784 1.3982 8.5567 23 1 1.5374 1.1794 6.2030 24 1 -0.3634 1.0276 -0.0005 25 1 -0.3633 -0.5139 -0.8901 26 1 -0.3633 -0.5139 0.8900 27 1 3.4357 -3.6550 -2.0868 28 1 3.7221 -3.5282 2.0475 29 1 1.9028 -0.4403 2.4532 30 1 2.6480 -2.8180 3.7828 31 1 4.1035 -1.8166 3.5666 32 1 2.5921 0.9526 3.8058 33 1 2.9444 1.0652 5.5469 34 1 4.1865 0.4598 4.4250 35 1 0.7061 -1.9341 5.0836 36 1 0.7787 -0.3039 5.7939 37 1 0.6521 -0.5011 4.0292 38 1 3.7281 -0.6474 9.1475 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000894161688.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:49:41 Heat of formation + Delta-G solvation = -51.916257 kcal Electronic energy + Delta-G solvation = -22189.933075 eV Core-core repulsion = 18753.865781 eV Total energy + Delta-G solvation = -3436.067294 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.133 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -50.15636 -41.65193 -40.01362 -39.02727 -36.11275 -33.96324 -33.21339 -30.94434 -30.39377 -28.03383 -27.56784 -26.76139 -25.76731 -23.54536 -21.65990 -20.86682 -19.29834 -18.45218 -18.06200 -17.99148 -17.41222 -17.10803 -16.52734 -16.27767 -16.09523 -15.72291 -15.62067 -15.41209 -14.82622 -14.74391 -14.54525 -14.48279 -14.05437 -13.76640 -13.33343 -13.29660 -13.28098 -13.01961 -12.39095 -12.19536 -12.08471 -11.88854 -11.56084 -11.43767 -11.13193 -10.64887 -10.56414 -10.41443 -10.36101 -8.71830 -8.32685 -6.29218 -0.24741 0.13644 0.56393 1.34021 1.37558 1.46753 2.11765 2.33693 2.56308 2.76086 2.96621 3.03620 3.54735 3.69158 3.86832 3.92376 4.03085 4.15548 4.31567 4.40431 4.44018 4.50906 4.62363 4.69861 4.76506 4.80360 4.86283 4.90314 5.04005 5.04812 5.18087 5.42631 5.47623 5.65976 5.73494 5.96395 6.15598 6.26021 6.41950 6.75076 6.86475 7.34615 8.83522 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.025794 B = 0.004922 C = 0.004370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.267098 B = 5686.822664 C = 6405.170205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.409 3.591 3 O -0.475 6.475 4 C -0.254 4.254 5 C 0.124 3.876 6 F -0.125 7.125 7 C 0.003 3.997 8 N -0.420 5.420 9 C 0.019 3.981 10 C 0.231 3.769 11 N -0.711 5.711 12 C 0.149 3.851 13 C 0.028 3.972 14 C -0.145 4.145 15 C -0.146 4.146 16 C -0.514 4.514 17 H 0.043 0.957 18 C 0.027 3.973 19 N -0.936 5.936 20 Si 0.923 3.077 21 H -0.280 1.280 22 H -0.315 1.315 23 H -0.211 1.211 24 H 0.096 0.904 25 H 0.116 0.884 26 H 0.113 0.887 27 H 0.193 0.807 28 H 0.173 0.827 29 H 0.402 0.598 30 H 0.074 0.926 31 H 0.058 0.942 32 H 0.047 0.953 33 H 0.045 0.955 34 H 0.041 0.959 35 H 0.058 0.942 36 H 0.032 0.968 37 H 0.060 0.940 38 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.423 -0.797 -18.366 20.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.251 4.251 2 C 0.286 3.714 3 O -0.349 6.349 4 C -0.269 4.269 5 C 0.102 3.898 6 F -0.104 7.104 7 C -0.155 4.155 8 N -0.127 5.127 9 C -0.146 4.146 10 C 0.118 3.882 11 N -0.336 5.336 12 C 0.026 3.974 13 C 0.027 3.973 14 C -0.202 4.202 15 C -0.203 4.203 16 C -0.552 4.552 17 H 0.062 0.938 18 C -0.172 4.172 19 N -0.574 5.574 20 Si 0.753 3.247 21 H -0.207 1.207 22 H -0.245 1.245 23 H -0.135 1.135 24 H 0.115 0.885 25 H 0.135 0.865 26 H 0.131 0.869 27 H 0.209 0.791 28 H 0.190 0.810 29 H 0.238 0.762 30 H 0.092 0.908 31 H 0.076 0.924 32 H 0.066 0.934 33 H 0.064 0.936 34 H 0.060 0.940 35 H 0.077 0.923 36 H 0.050 0.950 37 H 0.079 0.921 38 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -7.525 -1.047 -18.050 19.584 hybrid contribution -0.851 1.597 0.745 1.957 sum -8.376 0.550 -17.305 19.233 Atomic orbital electron populations 1.22368 0.89542 1.06514 1.06681 1.22821 0.93663 0.85990 0.68921 1.90603 1.73477 1.34950 1.35907 1.20415 1.12328 1.01523 0.92659 1.18544 0.97802 0.93965 0.79537 1.91520 1.88354 1.86539 1.43940 1.22805 1.00964 0.93606 0.98126 1.67381 1.15244 1.32147 0.97974 1.22633 1.02162 0.92570 0.97253 1.18709 0.92231 0.92203 0.85060 1.44887 1.54765 1.30337 1.03583 1.21442 0.97373 0.97379 0.81226 1.18623 0.93238 0.92724 0.92702 1.22298 1.00199 0.97680 1.00011 1.22252 0.96831 1.01434 0.99763 1.20927 1.34939 1.07665 0.91693 0.93847 1.25680 0.97079 0.98621 0.95838 1.70138 1.37373 1.44964 1.04972 0.86720 0.79882 0.79904 0.78227 1.20715 1.24469 1.13473 0.88510 0.86528 0.86856 0.79055 0.81010 0.76167 0.90780 0.92366 0.93411 0.93622 0.94009 0.92319 0.94973 0.92140 0.92750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.96 10.23 71.24 0.73 -2.23 16 2 C 0.41 9.93 5.31 27.94 0.15 10.08 16 3 O -0.48 -15.01 17.85 -3.07 -0.05 -15.06 16 4 C -0.25 -6.33 5.60 -19.82 -0.11 -6.44 16 5 C 0.12 2.84 7.34 22.83 0.17 3.01 16 6 F -0.13 -2.74 16.92 44.97 0.76 -1.98 16 7 C 0.00 0.07 11.15 84.68 0.94 1.02 16 8 N -0.42 -10.64 10.31 -195.26 -2.01 -12.65 16 9 C 0.02 0.50 10.48 84.95 0.89 1.39 16 10 C 0.23 6.04 6.69 38.92 0.26 6.30 16 11 N -0.71 -19.49 5.09 -338.29 -1.72 -21.21 16 12 C 0.15 4.80 3.78 86.38 0.33 5.13 16 13 C 0.03 1.10 0.50 -52.92 -0.03 1.07 16 14 C -0.14 -5.55 7.51 71.98 0.54 -5.01 16 15 C -0.15 -5.04 7.67 71.98 0.55 -4.49 16 16 C -0.51 -25.98 8.61 25.60 0.22 -25.76 16 17 H 0.04 2.43 7.99 -2.91 -0.02 2.40 16 18 C 0.03 1.43 5.25 84.66 0.44 1.88 16 19 N -0.94 -55.53 13.96 21.45 0.30 -55.23 16 20 Si 0.92 41.20 22.94 68.60 1.57 42.77 16 21 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 22 H -0.32 -14.73 7.11 99.48 0.71 -14.03 16 23 H -0.21 -8.21 4.58 99.48 0.46 -7.75 16 24 H 0.10 1.36 8.12 -2.39 -0.02 1.34 16 25 H 0.12 1.34 8.14 -2.38 -0.02 1.32 16 26 H 0.11 1.41 8.14 -2.39 -0.02 1.39 16 27 H 0.19 2.93 8.06 -2.91 -0.02 2.91 16 28 H 0.17 4.23 6.74 -2.91 -0.02 4.21 16 29 H 0.40 10.67 5.21 -92.71 -0.48 10.19 16 30 H 0.07 2.28 7.75 -2.39 -0.02 2.26 16 31 H 0.06 1.98 8.13 -2.39 -0.02 1.96 16 32 H 0.05 1.57 7.09 -2.39 -0.02 1.55 16 33 H 0.05 1.87 3.84 -2.39 -0.01 1.86 16 34 H 0.04 1.64 8.13 -2.39 -0.02 1.62 16 35 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 36 H 0.03 1.19 2.74 -2.39 -0.01 1.19 16 37 H 0.06 1.67 6.86 -2.39 -0.02 1.65 16 38 H 0.26 14.89 8.31 -92.70 -0.77 14.12 16 Total: -1.00 -63.12 309.39 4.30 -58.83 By element: Atomic # 1 Polarization: 18.24 SS G_CDS: 0.37 Total: 18.61 kcal Atomic # 6 Polarization: -19.15 SS G_CDS: 5.09 Total: -14.07 kcal Atomic # 7 Polarization: -85.66 SS G_CDS: -3.43 Total: -89.09 kcal Atomic # 8 Polarization: -15.01 SS G_CDS: -0.05 Total: -15.06 kcal Atomic # 9 Polarization: -2.74 SS G_CDS: 0.76 Total: -1.98 kcal Atomic # 14 Polarization: 41.20 SS G_CDS: 1.57 Total: 42.77 kcal Total: -63.12 4.30 -58.83 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894161688.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.910 kcal (2) G-P(sol) polarization free energy of solvation -63.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds