Wall clock time and date at job start Tue Mar 31 2020 01:33:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81398 * 1 3 3 C 1.81400 * 102.99800 * 2 1 4 4 C 1.52995 * 109.47328 * 60.00041 * 3 2 1 5 5 C 1.52997 * 109.47282 * 299.99704 * 3 2 1 6 6 C 1.53006 * 109.47028 * 180.02562 * 3 2 1 7 7 C 1.52999 * 109.46626 * 294.99704 * 6 3 2 8 8 N 1.46506 * 109.46691 * 179.97438 * 7 6 3 9 9 C 1.38826 * 119.99780 * 179.97438 * 8 7 6 10 10 C 1.39798 * 119.58383 * 0.02562 * 9 8 7 11 11 C 1.38600 * 119.48984 * 179.97438 * 10 9 8 12 12 C 1.38393 * 118.67936 * 359.97438 * 11 10 9 13 13 C 1.40558 * 119.14753 * 0.02562 * 12 11 10 14 14 C 1.41314 * 119.78004 * 179.97438 * 13 12 11 15 15 H 1.08000 * 120.00310 * 0.02562 * 14 13 12 16 16 C 1.40026 * 120.00112 * 179.97438 * 14 13 12 17 17 N 1.30751 * 119.99789 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 120.00407 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.46791 * 0.02562 * 18 16 14 20 20 H 1.48501 * 109.46895 * 119.99909 * 18 16 14 21 21 H 1.48495 * 109.47066 * 240.00411 * 18 16 14 22 22 N 1.31959 * 119.58387 * 179.73063 * 9 8 7 23 23 H 1.08996 * 109.47249 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47286 * 299.99965 * 1 2 3 25 25 H 1.09006 * 109.47144 * 59.99936 * 1 2 3 26 26 H 1.09003 * 109.47743 * 179.97438 * 4 3 2 27 27 H 1.09002 * 109.47112 * 300.00049 * 4 3 2 28 28 H 1.09006 * 109.47389 * 59.99872 * 4 3 2 29 29 H 1.08990 * 109.47621 * 300.00490 * 5 3 2 30 30 H 1.09002 * 109.46731 * 60.00211 * 5 3 2 31 31 H 1.09004 * 109.47394 * 179.97438 * 5 3 2 32 32 H 1.08993 * 109.46955 * 55.00177 * 6 3 2 33 33 H 1.09000 * 109.47050 * 175.00006 * 6 3 2 34 34 H 1.08993 * 109.47839 * 299.99931 * 7 6 3 35 35 H 1.09000 * 109.47160 * 60.00369 * 7 6 3 36 36 H 0.96999 * 120.00076 * 0.02562 * 8 7 6 37 37 H 1.07998 * 120.25532 * 359.96726 * 10 9 8 38 38 H 1.07992 * 120.66234 * 180.02562 * 11 10 9 39 39 H 1.08001 * 120.42099 * 179.97438 * 12 11 10 40 40 H 0.96994 * 119.99619 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 6 1.6340 2.4267 1.2492 5 6 1.6340 2.4267 -1.2492 6 6 3.7423 1.9400 -0.0006 7 6 4.3182 1.3916 1.3065 8 7 5.7740 1.5562 1.3056 9 6 6.5213 1.1299 2.3951 10 6 5.8759 0.5443 3.4881 11 6 6.6240 0.1189 4.5746 12 6 7.9971 0.2881 4.5426 13 6 8.5874 0.8839 3.4147 14 6 9.9883 1.0637 3.3682 15 1 10.6017 0.7434 4.1973 16 6 10.5812 1.6563 2.2466 17 7 9.8387 2.0437 1.2425 18 14 12.4331 1.8934 2.1847 19 1 13.0406 1.3741 3.4362 20 1 12.9881 1.1548 1.0220 21 1 12.7427 3.3391 2.0464 22 7 7.8326 1.2773 2.3834 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 1.8795 3.4887 1.2495 27 1 0.5509 2.3038 1.2492 28 1 2.0529 1.9571 2.1392 29 1 2.0528 1.9571 -2.1392 30 1 0.5509 2.3038 -1.2492 31 1 1.8788 3.4889 -1.2490 32 1 4.1693 1.3954 -0.8427 33 1 3.9879 2.9982 -0.0902 34 1 3.8912 1.9362 2.1485 35 1 4.0726 0.3334 1.3960 36 1 6.2156 1.9637 0.5441 37 1 4.8026 0.4243 3.4860 38 1 6.1450 -0.3364 5.4287 39 1 8.6072 -0.0328 5.3741 40 1 10.2494 2.4545 0.4658 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000895669061.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:33:09 Heat of formation + Delta-G solvation = 24.505661 kcal Electronic energy + Delta-G solvation = -19377.637819 eV Core-core repulsion = 16511.097604 eV Total energy + Delta-G solvation = -2866.540215 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 280.130 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -38.33323 -37.23317 -34.57177 -33.14473 -30.55899 -29.95163 -28.87833 -27.72853 -27.24360 -25.26473 -23.11793 -21.43963 -20.41741 -20.22112 -17.30690 -16.58812 -15.90513 -15.26203 -15.12962 -14.76518 -14.38046 -14.28539 -14.05232 -13.84847 -13.52575 -12.99219 -12.80511 -12.75703 -12.42761 -12.27420 -11.95648 -11.78781 -11.74083 -11.28621 -11.12732 -11.03184 -10.91994 -10.78216 -10.52157 -10.35746 -9.83693 -9.77324 -9.41656 -8.80160 -7.84495 -7.71738 -7.44257 -6.42577 -6.26827 -4.41096 1.58389 2.45817 2.91689 3.14868 3.19502 3.30860 3.35602 4.02813 4.11633 4.52839 4.66059 4.90336 4.92385 4.93168 5.02882 5.28415 5.29955 5.42148 5.46069 5.54124 5.60877 5.62889 5.84098 5.87611 5.98626 6.10132 6.22379 6.30474 6.34471 6.66786 6.93537 6.96417 7.02153 7.31279 7.67312 7.88858 7.99388 8.23700 8.44035 8.76237 8.87078 9.19437 10.31244 10.46931 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.027914 B = 0.003657 C = 0.003380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1002.839751 B = 7655.285563 C = 8281.586074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 S -0.243 6.243 3 C -0.024 4.024 4 C -0.149 4.149 5 C -0.142 4.142 6 C -0.107 4.107 7 C 0.139 3.861 8 N -0.740 5.740 9 C 0.411 3.589 10 C -0.365 4.365 11 C -0.032 4.032 12 C -0.318 4.318 13 C 0.293 3.707 14 C -0.436 4.436 15 H 0.083 0.917 16 C 0.071 3.929 17 N -0.717 5.717 18 Si 0.904 3.096 19 H -0.261 1.261 20 H -0.275 1.275 21 H -0.275 1.275 22 N -0.532 5.532 23 H 0.097 0.903 24 H 0.075 0.925 25 H 0.073 0.927 26 H 0.067 0.933 27 H 0.054 0.946 28 H 0.076 0.924 29 H 0.068 0.932 30 H 0.055 0.945 31 H 0.066 0.934 32 H 0.077 0.923 33 H 0.081 0.919 34 H 0.054 0.946 35 H 0.061 0.939 36 H 0.394 0.606 37 H 0.090 0.910 38 H 0.092 0.908 39 H 0.094 0.906 40 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.812 1.486 -5.263 16.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.297 4.297 2 S -0.016 6.016 3 C -0.134 4.134 4 C -0.208 4.208 5 C -0.201 4.201 6 C -0.146 4.146 7 C 0.014 3.986 8 N -0.376 5.376 9 C 0.172 3.828 10 C -0.391 4.391 11 C -0.057 4.057 12 C -0.341 4.341 13 C 0.165 3.835 14 C -0.468 4.468 15 H 0.101 0.899 16 C -0.153 4.153 17 N -0.339 5.339 18 Si 0.729 3.271 19 H -0.185 1.185 20 H -0.200 1.200 21 H -0.200 1.200 22 N -0.253 5.253 23 H 0.116 0.884 24 H 0.094 0.906 25 H 0.092 0.908 26 H 0.085 0.915 27 H 0.073 0.927 28 H 0.095 0.905 29 H 0.087 0.913 30 H 0.074 0.926 31 H 0.085 0.915 32 H 0.095 0.905 33 H 0.099 0.901 34 H 0.072 0.928 35 H 0.079 0.921 36 H 0.228 0.772 37 H 0.108 0.892 38 H 0.110 0.890 39 H 0.112 0.888 40 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -14.904 1.003 -6.098 16.134 hybrid contribution -0.409 0.858 0.387 1.026 sum -15.312 1.861 -5.711 16.448 Atomic orbital electron populations 1.23451 0.95528 1.06115 1.04631 1.87161 1.05975 1.10739 1.97766 1.22638 0.98853 0.93216 0.98714 1.22226 1.00326 1.01209 0.97009 1.22116 1.00486 1.01002 0.96531 1.21647 0.90981 1.02518 0.99443 1.21187 0.81283 1.00376 0.95792 1.44120 1.04085 1.69490 1.19936 1.18521 0.89819 0.89061 0.85436 1.20624 0.98032 1.21492 0.98914 1.20595 0.93909 0.95519 0.95651 1.21528 0.94291 1.16181 1.02060 1.18201 0.92956 0.86530 0.85775 1.19603 0.91019 1.33934 1.02252 0.89917 1.26047 0.99842 0.94229 0.95209 1.70172 1.35931 1.24192 1.03584 0.86337 0.82972 0.78560 0.79280 1.18475 1.19986 1.20002 1.68214 1.01147 1.27222 1.28764 0.88410 0.90559 0.90766 0.91452 0.92703 0.90539 0.91308 0.92567 0.91520 0.90454 0.90052 0.92836 0.92088 0.77183 0.89157 0.88996 0.88777 0.92098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.06 9.87 101.05 1.00 -0.06 16 2 S -0.24 -2.87 20.10 -107.50 -2.16 -5.03 16 3 C -0.02 -0.25 0.70 -90.62 -0.06 -0.32 16 4 C -0.15 -1.46 7.83 37.15 0.29 -1.17 16 5 C -0.14 -1.23 8.32 37.16 0.31 -0.92 16 6 C -0.11 -1.35 4.38 -26.73 -0.12 -1.47 16 7 C 0.14 2.26 4.22 -4.04 -0.02 2.25 16 8 N -0.74 -15.32 5.72 -60.39 -0.35 -15.67 16 9 C 0.41 10.41 7.65 -155.32 -1.19 9.22 16 10 C -0.36 -8.76 9.34 -38.86 -0.36 -9.12 16 11 C -0.03 -0.78 10.15 -39.39 -0.40 -1.18 16 12 C -0.32 -8.29 9.83 -38.65 -0.38 -8.67 16 13 C 0.29 8.37 6.55 -85.00 -0.56 7.82 16 14 C -0.44 -12.09 9.14 -37.74 -0.34 -12.44 16 15 H 0.08 2.16 7.85 -52.49 -0.41 1.75 16 16 C 0.07 1.87 5.50 -17.34 -0.10 1.77 16 17 N -0.72 -19.42 11.46 55.55 0.64 -18.78 16 18 Si 0.90 19.08 29.56 -169.99 -5.02 14.05 16 19 H -0.26 -5.41 7.11 56.52 0.40 -5.01 16 20 H -0.27 -5.71 7.11 56.52 0.40 -5.30 16 21 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 22 N -0.53 -15.11 7.89 -10.33 -0.08 -15.19 16 23 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 24 H 0.08 0.57 7.00 -51.92 -0.36 0.21 16 25 H 0.07 0.53 7.00 -51.92 -0.36 0.16 16 26 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 27 H 0.05 0.46 6.68 -51.93 -0.35 0.11 16 28 H 0.08 0.85 6.35 -51.93 -0.33 0.52 16 29 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.06 0.43 6.68 -51.93 -0.35 0.08 16 31 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.05 0.87 6.12 -51.93 -0.32 0.55 16 35 H 0.06 1.07 6.91 -51.93 -0.36 0.71 16 36 H 0.39 8.07 8.59 -40.82 -0.35 7.72 16 37 H 0.09 1.95 6.68 -52.49 -0.35 1.60 16 38 H 0.09 1.89 8.06 -52.49 -0.42 1.47 16 39 H 0.09 2.28 8.06 -52.49 -0.42 1.86 16 40 H 0.27 6.57 8.29 -40.82 -0.34 6.23 16 LS Contribution 332.63 15.07 5.01 5.01 Total: -1.00 -30.65 332.63 -9.95 -40.59 By element: Atomic # 1 Polarization: 15.34 SS G_CDS: -6.06 Total: 9.29 kcal Atomic # 6 Polarization: -12.35 SS G_CDS: -1.93 Total: -14.27 kcal Atomic # 7 Polarization: -49.85 SS G_CDS: 0.21 Total: -49.64 kcal Atomic # 14 Polarization: 19.08 SS G_CDS: -5.02 Total: 14.05 kcal Atomic # 16 Polarization: -2.87 SS G_CDS: -2.16 Total: -5.03 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -30.65 -9.95 -40.59 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000895669061.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.100 kcal (2) G-P(sol) polarization free energy of solvation -30.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.595 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds