Wall clock time and date at job start Tue Mar 31 2020 02:20:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.47471 * 2 1 4 4 C 1.53004 * 109.46956 * 239.99693 * 2 1 3 5 5 C 1.50701 * 109.47034 * 65.00414 * 4 2 1 6 6 H 1.08001 * 120.00093 * 359.97438 * 5 4 2 7 7 C 1.37875 * 119.99853 * 179.97438 * 5 4 2 8 8 N 1.31512 * 119.99795 * 179.97438 * 7 5 4 9 9 Si 1.86799 * 120.00086 * 0.02562 * 7 5 4 10 10 H 1.48497 * 109.47668 * 89.99564 * 9 7 5 11 11 H 1.48501 * 109.47025 * 209.99447 * 9 7 5 12 12 H 1.48503 * 109.47195 * 329.99010 * 9 7 5 13 13 C 1.52999 * 109.46731 * 120.00069 * 2 1 3 14 14 N 1.46892 * 109.47255 * 294.99583 * 13 2 1 15 15 C 1.46901 * 110.99997 * 180.02562 * 14 13 2 16 16 C 1.50706 * 109.46975 * 179.97438 * 15 14 13 17 17 N 1.28337 * 124.89817 * 89.69465 * 16 15 14 18 18 C 1.33493 * 117.83559 * 180.28077 * 17 16 15 19 19 C 1.33872 * 113.17676 * 359.95764 * 18 17 16 20 20 S 1.70748 * 124.90732 * 270.00156 * 16 15 14 21 21 C 1.51714 * 110.88804 * 180.02562 * 19 18 17 22 22 C 1.54307 * 104.80676 * 17.23542 * 21 19 18 23 23 C 1.52612 * 137.15543 * 179.91026 * 18 17 16 24 24 H 1.09001 * 109.47187 * 300.00338 * 1 2 3 25 25 H 1.09001 * 109.46966 * 59.99812 * 1 2 3 26 26 H 1.09001 * 109.47471 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47040 * 185.00258 * 4 2 1 28 28 H 1.08998 * 109.47078 * 304.99991 * 4 2 1 29 29 H 0.97001 * 119.99883 * 180.02562 * 8 7 5 30 30 H 1.09006 * 109.47038 * 174.99444 * 13 2 1 31 31 H 1.08997 * 109.47345 * 55.00087 * 13 2 1 32 32 H 1.00896 * 111.00308 * 56.04963 * 14 13 2 33 33 H 1.08995 * 109.47127 * 60.00385 * 15 14 13 34 34 H 1.08997 * 109.47658 * 299.99871 * 15 14 13 35 35 H 1.08997 * 110.36853 * 136.06698 * 21 19 18 36 36 H 1.08996 * 110.37780 * 258.29126 * 21 19 18 37 37 H 1.09002 * 110.96947 * 91.91892 * 22 21 19 38 38 H 1.09004 * 110.97112 * 215.64412 * 22 21 19 39 39 H 1.09003 * 110.32038 * 43.74249 * 23 18 17 40 40 H 1.09005 * 110.31704 * 281.54815 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6413 0.0570 -2.4766 6 1 1.0800 0.9741 -2.3758 7 6 1.9932 -0.4018 -3.7283 8 7 1.6449 0.2771 -4.7993 9 14 2.9635 -1.9885 -3.9027 10 1 2.0243 -3.1328 -4.0199 11 1 3.8124 -1.9184 -5.1191 12 1 3.8252 -2.1757 -2.7079 13 6 2.0399 -0.7213 1.2493 14 7 1.6513 0.0374 2.4456 15 6 2.1257 -0.6266 3.6671 16 6 1.7097 0.1793 4.8708 17 7 0.6052 0.0315 5.5073 18 6 0.3776 0.8281 6.5541 19 6 1.3752 1.6898 6.7871 20 16 2.6366 1.4256 5.5800 21 6 1.0636 2.5670 7.9851 22 6 -0.0727 1.8324 8.7268 23 6 -0.7305 1.0347 7.5829 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 3.1263 -0.7996 -1.2056 28 1 1.6053 -1.7199 -1.2951 29 1 1.8922 -0.0459 -5.6800 30 1 3.1262 -0.7996 1.2056 31 1 1.6053 -1.7198 1.2952 32 1 0.6529 0.1793 2.4753 33 1 3.2125 -0.7038 3.6400 34 1 1.6920 -1.6246 3.7301 35 1 1.9396 2.6573 8.6273 36 1 0.7307 3.5520 7.6579 37 1 0.3274 1.1634 9.4887 38 1 -0.7759 2.5416 9.1636 39 1 -1.0906 0.0735 7.9496 40 1 -1.5502 1.6056 7.1468 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000896286921.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:20:24 Heat of formation + Delta-G solvation = 32.376418 kcal Electronic energy + Delta-G solvation = -18763.474421 eV Core-core repulsion = 15897.275507 eV Total energy + Delta-G solvation = -2866.198913 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 280.130 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.46852 -37.44677 -36.24198 -33.98006 -32.03447 -29.32699 -28.74079 -27.48933 -26.46069 -24.76873 -22.71627 -21.83015 -21.32667 -19.18046 -18.90017 -18.12662 -16.83678 -16.24961 -15.74204 -15.10603 -14.60041 -14.20906 -14.15666 -13.82487 -13.59098 -13.33226 -13.19245 -12.87020 -12.57072 -12.17720 -12.06275 -11.92934 -11.60453 -11.59738 -11.38655 -11.28063 -11.02177 -10.73092 -10.43048 -9.81973 -9.72319 -9.68367 -9.46126 -9.31524 -9.05240 -8.72729 -8.50298 -8.32566 -6.00378 -3.97330 0.59143 1.10226 1.71621 2.57846 3.32625 3.40163 3.43532 3.50261 4.19413 4.31551 4.48227 4.52030 4.57510 4.79683 5.08330 5.16142 5.26510 5.30014 5.33110 5.39360 5.43880 5.50230 5.61376 5.64851 5.71068 5.73960 5.94946 6.02930 6.13182 6.35671 6.45835 6.73936 6.96352 7.05862 7.13334 7.32280 7.41603 7.52382 7.62172 7.84014 8.58999 9.05426 9.62406 11.13081 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.041695 B = 0.002797 C = 0.002757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 671.380949 B =10007.915875 C =10153.719048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.075 4.075 3 H 0.072 0.928 4 C -0.008 4.008 5 C -0.513 4.513 6 H 0.074 0.926 7 C 0.064 3.936 8 N -0.905 5.905 9 Si 0.878 3.122 10 H -0.279 1.279 11 H -0.289 1.289 12 H -0.266 1.266 13 C 0.062 3.938 14 N -0.684 5.684 15 C 0.133 3.867 16 C 0.066 3.934 17 N -0.468 5.468 18 C 0.044 3.956 19 C -0.262 4.262 20 S 0.163 5.837 21 C -0.037 4.037 22 C -0.116 4.116 23 C -0.040 4.040 24 H 0.033 0.967 25 H 0.068 0.932 26 H 0.041 0.959 27 H 0.016 0.984 28 H 0.010 0.990 29 H 0.262 0.738 30 H 0.070 0.930 31 H 0.028 0.972 32 H 0.347 0.653 33 H 0.094 0.906 34 H 0.061 0.939 35 H 0.076 0.924 36 H 0.084 0.916 37 H 0.077 0.923 38 H 0.086 0.914 39 H 0.080 0.920 40 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.525 1.747 28.228 28.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.094 4.094 3 H 0.091 0.909 4 C -0.046 4.046 5 C -0.551 4.551 6 H 0.092 0.908 7 C -0.136 4.136 8 N -0.545 5.545 9 Si 0.706 3.294 10 H -0.204 1.204 11 H -0.215 1.215 12 H -0.190 1.190 13 C -0.066 4.066 14 N -0.317 5.317 15 C 0.000 4.000 16 C -0.214 4.214 17 N -0.182 5.182 18 C -0.087 4.087 19 C -0.383 4.383 20 S 0.421 5.579 21 C -0.077 4.077 22 C -0.155 4.155 23 C -0.080 4.080 24 H 0.052 0.948 25 H 0.087 0.913 26 H 0.060 0.940 27 H 0.034 0.966 28 H 0.028 0.972 29 H 0.072 0.928 30 H 0.089 0.911 31 H 0.047 0.953 32 H 0.166 0.834 33 H 0.112 0.888 34 H 0.079 0.921 35 H 0.095 0.905 36 H 0.102 0.898 37 H 0.096 0.904 38 H 0.105 0.895 39 H 0.099 0.901 40 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 0.687 2.180 27.539 27.634 hybrid contribution -0.858 -1.684 0.108 1.893 sum -0.171 0.496 27.647 27.652 Atomic orbital electron populations 1.21759 0.96171 1.00615 1.00854 1.21033 0.95288 1.00244 0.92809 0.90915 1.19605 0.95962 0.95711 0.93335 1.21129 1.35267 1.09592 0.89076 0.90815 1.25032 0.95679 0.96958 0.95958 1.69916 1.47208 1.39330 0.97997 0.86799 0.80640 0.84308 0.77641 1.20446 1.21492 1.19048 1.22215 1.00531 0.94668 0.89222 1.60615 1.20687 1.50013 1.00404 1.20476 1.00836 0.93952 0.84690 1.26692 0.93156 1.00186 1.01363 1.65391 1.19115 1.26333 1.07355 1.21594 0.97967 0.93762 0.95413 1.27102 0.99490 1.06358 1.05358 1.83806 1.20086 1.32712 1.21320 1.20633 0.98809 0.96977 0.91265 1.22350 0.97164 0.99043 0.96926 1.20839 0.94380 1.01228 0.91532 0.94757 0.91267 0.93976 0.96607 0.97180 0.92838 0.91109 0.95327 0.83367 0.88830 0.92146 0.90510 0.89767 0.90446 0.89531 0.90126 0.89575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.56 8.77 37.16 0.33 -2.23 16 2 C -0.07 -1.47 2.55 -90.62 -0.23 -1.70 16 3 H 0.07 1.52 8.14 -51.93 -0.42 1.10 16 4 C -0.01 -0.20 3.52 -27.88 -0.10 -0.29 16 5 C -0.51 -14.51 8.96 -34.44 -0.31 -14.82 16 6 H 0.07 2.24 7.30 -52.49 -0.38 1.86 16 7 C 0.06 1.88 5.47 -17.82 -0.10 1.79 16 8 N -0.91 -28.08 13.96 55.43 0.77 -27.31 16 9 Si 0.88 21.85 27.47 -169.99 -4.67 17.18 16 10 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 11 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 12 H -0.27 -6.33 6.54 56.52 0.37 -5.96 16 13 C 0.06 1.00 5.14 -3.83 -0.02 0.98 16 14 N -0.68 -9.99 6.49 -115.06 -0.75 -10.73 16 15 C 0.13 1.67 6.26 -4.97 -0.03 1.64 16 16 C 0.07 0.86 6.88 -13.74 -0.09 0.76 16 17 N -0.47 -6.58 10.54 -7.23 -0.08 -6.66 16 18 C 0.04 0.52 7.70 -82.45 -0.63 -0.11 16 19 C -0.26 -2.82 7.42 -35.34 -0.26 -3.08 16 20 S 0.16 1.84 23.18 -107.50 -2.49 -0.65 16 21 C -0.04 -0.27 6.80 -26.70 -0.18 -0.45 16 22 C -0.12 -0.66 7.12 -25.43 -0.18 -0.84 16 23 C -0.04 -0.33 6.80 -26.31 -0.18 -0.51 16 24 H 0.03 0.56 6.68 -51.93 -0.35 0.21 16 25 H 0.07 1.45 6.95 -51.93 -0.36 1.09 16 26 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 27 H 0.02 0.37 7.20 -51.93 -0.37 0.00 16 28 H 0.01 0.23 7.57 -51.93 -0.39 -0.16 16 29 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 30 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 31 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.35 5.20 6.98 -39.29 -0.27 4.93 16 33 H 0.09 1.04 8.14 -51.93 -0.42 0.61 16 34 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 35 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 38 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 39 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 334.47 15.07 5.04 5.04 Total: -1.00 -31.84 334.47 -10.53 -42.37 By element: Atomic # 1 Polarization: 5.99 SS G_CDS: -6.37 Total: -0.38 kcal Atomic # 6 Polarization: -16.88 SS G_CDS: -1.99 Total: -18.87 kcal Atomic # 7 Polarization: -44.65 SS G_CDS: -0.05 Total: -44.70 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -4.67 Total: 17.18 kcal Atomic # 16 Polarization: 1.84 SS G_CDS: -2.49 Total: -0.65 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -31.84 -10.53 -42.37 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000896286921.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.747 kcal (2) G-P(sol) polarization free energy of solvation -31.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.370 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds