Wall clock time and date at job start Tue Mar 31 2020 01:45:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.33119 * 120.00347 * 2 1 4 4 F 1.35096 * 120.00106 * 183.97957 * 3 2 1 5 5 C 1.47300 * 119.99615 * 3.98191 * 3 2 1 6 6 O 1.21601 * 119.99744 * 325.85183 * 5 3 2 7 7 N 1.34780 * 119.99648 * 145.57652 * 5 3 2 8 8 C 1.46502 * 119.99451 * 183.88230 * 7 5 3 9 9 C 1.50709 * 109.46630 * 90.00518 * 8 7 5 10 10 H 1.07996 * 119.99683 * 359.97438 * 9 8 7 11 11 C 1.37870 * 119.99664 * 179.97438 * 9 8 7 12 12 N 1.31516 * 120.00496 * 359.97438 * 11 9 8 13 13 Si 1.86803 * 119.99855 * 180.02562 * 11 9 8 14 14 H 1.48498 * 109.47049 * 90.00268 * 13 11 9 15 15 H 1.48500 * 109.46828 * 209.99994 * 13 11 9 16 16 H 1.48500 * 109.47031 * 329.99678 * 13 11 9 17 17 C 1.46500 * 120.00164 * 3.89065 * 7 5 3 18 18 C 1.52995 * 109.47184 * 94.20882 * 17 7 5 19 19 C 1.47198 * 109.46737 * 179.97438 * 18 17 7 20 20 N 6.56367 * 142.86241 * 19.43790 * 2 1 3 21 21 C 1.50707 * 120.00273 * 180.02562 * 2 1 3 22 22 C 1.53007 * 117.49515 * 8.61862 * 21 2 1 23 23 C 1.53002 * 60.00034 * 252.51517 * 22 21 2 24 24 H 1.08997 * 109.47021 * 84.46028 * 1 2 3 25 25 H 1.08994 * 109.46947 * 204.45943 * 1 2 3 26 26 H 1.08997 * 109.46524 * 324.45545 * 1 2 3 27 27 H 1.08997 * 109.46875 * 209.99617 * 8 7 5 28 28 H 1.08992 * 109.47195 * 330.00340 * 8 7 5 29 29 H 0.96996 * 120.00189 * 180.02562 * 12 11 9 30 30 H 1.09001 * 109.46487 * 214.21294 * 17 7 5 31 31 H 1.09000 * 109.47036 * 334.21040 * 17 7 5 32 32 H 1.08991 * 109.47423 * 300.00087 * 18 17 7 33 33 H 1.09000 * 109.47004 * 60.00139 * 18 17 7 34 34 H 1.08993 * 115.55538 * 154.32821 * 21 2 1 35 35 H 1.09005 * 117.49618 * 0.02562 * 22 21 2 36 36 H 1.08989 * 117.49635 * 145.02472 * 22 21 2 37 37 H 1.09003 * 117.49897 * 252.51297 * 23 22 21 38 38 H 1.08998 * 117.50424 * 107.48996 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1726 1.1528 0.0000 4 9 3.5212 1.1542 -0.0812 5 6 1.4388 2.4269 0.0886 6 8 0.3465 2.5370 -0.4343 7 7 1.9756 3.4689 0.7540 8 6 1.2103 4.7077 0.9150 9 6 0.4026 4.6375 2.1855 10 1 0.4540 3.7579 2.8100 11 6 -0.4017 5.6961 2.5503 12 7 -0.4639 6.7674 1.7900 13 14 -1.4023 5.6094 4.1254 14 1 -0.6010 6.1526 5.2514 15 1 -2.6426 6.4109 3.9685 16 1 -1.7589 4.1959 4.4081 17 6 3.3244 3.3627 1.3159 18 6 4.3384 3.9258 0.3182 19 6 5.6935 3.8197 0.8831 20 7 6.7394 3.7368 1.3187 21 6 2.2606 -1.3051 -0.0006 22 6 1.4517 -2.5878 -0.2045 23 6 2.0261 -2.2567 1.1744 24 1 -0.3633 0.0992 -1.0228 25 1 -0.3633 -0.9354 0.4255 26 1 -0.3632 0.8362 0.5974 27 1 1.8954 5.5539 0.9665 28 1 0.5401 4.8338 0.0649 29 1 -1.0295 7.5123 2.0468 30 1 3.3762 3.9293 2.2456 31 1 3.5536 2.3158 1.5151 32 1 4.2865 3.3593 -0.6115 33 1 4.1091 4.9727 0.1190 34 1 3.2632 -1.2690 -0.4265 35 1 0.3746 -2.4875 -0.3387 36 1 1.9221 -3.3956 -0.7649 37 1 2.8744 -2.8468 1.5211 38 1 1.3269 -1.9387 1.9478 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000900328508.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:45:21 Heat of formation + Delta-G solvation = -28.618503 kcal Electronic energy + Delta-G solvation = -21997.707505 eV Core-core repulsion = 18562.650477 eV Total energy + Delta-G solvation = -3435.057028 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.133 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -49.93672 -40.85179 -38.94181 -38.03457 -36.82225 -34.85499 -33.92141 -32.24687 -29.79780 -28.10000 -25.96278 -25.41216 -23.87384 -23.18658 -20.85036 -19.58306 -18.97638 -18.49199 -18.27561 -17.69391 -17.35616 -16.70709 -16.43315 -15.71637 -15.60004 -15.41738 -15.23571 -14.88760 -14.45085 -14.33618 -13.95297 -13.92074 -13.59745 -13.37308 -13.28842 -13.10666 -12.87605 -12.73156 -12.59195 -12.51850 -12.25764 -12.18599 -11.91183 -11.74222 -11.69013 -11.35639 -10.67872 -10.58678 -9.78981 -9.45512 -8.18630 -6.31309 0.21000 1.41339 1.42941 1.52366 1.64163 1.78336 1.85759 2.16117 2.43115 2.89798 2.98617 3.13523 3.34261 3.54510 3.82469 3.86654 3.97741 4.06457 4.08355 4.16722 4.47137 4.62953 4.71881 4.74210 4.82695 4.85563 4.97560 4.98394 5.01839 5.14866 5.27574 5.29083 5.33247 5.51349 5.55789 5.81969 6.09554 6.52753 6.57820 6.76402 7.15347 7.39965 8.88412 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.012253 B = 0.006233 C = 0.004639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2284.526768 B = 4491.173748 C = 6034.975790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.041 4.041 3 C -0.024 4.024 4 F -0.129 7.129 5 C 0.537 3.463 6 O -0.553 6.553 7 N -0.587 5.587 8 C 0.258 3.742 9 C -0.543 4.543 10 H 0.054 0.946 11 C 0.015 3.985 12 N -0.924 5.924 13 Si 0.958 3.042 14 H -0.269 1.269 15 H -0.283 1.283 16 H -0.272 1.272 17 C 0.108 3.892 18 C -0.035 4.035 19 C 0.247 3.753 20 N -0.483 5.483 21 C -0.149 4.149 22 C -0.155 4.155 23 C -0.158 4.158 24 H 0.084 0.916 25 H 0.091 0.909 26 H 0.055 0.945 27 H 0.038 0.962 28 H 0.013 0.987 29 H 0.266 0.734 30 H 0.088 0.912 31 H 0.099 0.901 32 H 0.125 0.875 33 H 0.125 0.875 34 H 0.121 0.879 35 H 0.106 0.894 36 H 0.118 0.882 37 H 0.117 0.883 38 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.513 -15.988 -3.278 17.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.044 4.044 3 C -0.046 4.046 4 F -0.108 7.108 5 C 0.325 3.675 6 O -0.433 6.433 7 N -0.316 5.316 8 C 0.138 3.862 9 C -0.581 4.581 10 H 0.072 0.928 11 C -0.185 4.185 12 N -0.563 5.563 13 Si 0.784 3.216 14 H -0.194 1.194 15 H -0.209 1.209 16 H -0.197 1.197 17 C -0.016 4.016 18 C -0.076 4.076 19 C -0.071 4.071 20 N -0.161 5.161 21 C -0.167 4.167 22 C -0.192 4.192 23 C -0.195 4.195 24 H 0.102 0.898 25 H 0.109 0.891 26 H 0.073 0.927 27 H 0.056 0.944 28 H 0.031 0.969 29 H 0.075 0.925 30 H 0.107 0.893 31 H 0.117 0.883 32 H 0.143 0.857 33 H 0.143 0.857 34 H 0.139 0.861 35 H 0.124 0.876 36 H 0.137 0.863 37 H 0.135 0.865 38 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 6.479 -15.822 -2.903 17.342 hybrid contribution -0.743 0.751 0.518 1.176 sum 5.736 -15.072 -2.385 16.302 Atomic orbital electron populations 1.20885 0.89335 1.03049 1.03573 1.22078 0.97110 0.92314 0.92856 1.19139 0.77321 0.93719 1.14437 1.91411 1.28251 1.96996 1.94167 1.18604 0.85786 0.83840 0.79299 1.90780 1.22017 1.82464 1.48063 1.48056 1.15966 1.14875 1.52725 1.18944 0.90836 0.80685 0.95757 1.21684 1.26724 1.02071 1.07637 0.92805 1.25694 0.97579 0.94926 1.00252 1.70018 1.40354 1.06641 1.39306 0.85549 0.78268 0.78092 0.79731 1.19416 1.20861 1.19684 1.21646 0.79819 1.03682 0.96498 1.19751 0.81717 1.06421 0.99754 1.29020 0.94343 0.91437 0.92256 1.81215 1.13674 1.10842 1.10377 1.21096 1.00524 0.87680 1.07396 1.23195 1.00545 0.96269 0.99197 1.23102 1.04179 1.00587 0.91614 0.89787 0.89058 0.92667 0.94364 0.96907 0.92460 0.89338 0.88337 0.85743 0.85680 0.86093 0.87572 0.86341 0.86523 0.88664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.02 8.08 71.23 0.58 -2.44 16 2 C -0.04 -1.07 5.82 -17.60 -0.10 -1.17 16 3 C -0.02 -0.73 6.47 23.51 0.15 -0.58 16 4 F -0.13 -3.43 12.71 44.97 0.57 -2.86 16 5 C 0.54 20.86 6.98 86.63 0.60 21.47 16 6 O -0.55 -25.51 13.87 -4.03 -0.06 -25.57 16 7 N -0.59 -22.68 2.46 -830.19 -2.04 -24.72 16 8 C 0.26 12.53 5.21 85.64 0.45 12.98 16 9 C -0.54 -29.03 9.39 25.60 0.24 -28.79 16 10 H 0.05 2.87 7.81 -2.91 -0.02 2.85 16 11 C 0.02 0.82 5.46 84.65 0.46 1.28 16 12 N -0.92 -52.78 13.29 21.44 0.28 -52.49 16 13 Si 0.96 42.90 29.54 68.60 2.03 44.93 16 14 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 15 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 16 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 17 C 0.11 3.19 4.91 86.38 0.42 3.61 16 18 C -0.04 -0.84 5.71 28.79 0.16 -0.67 16 19 C 0.25 6.45 15.43 89.44 1.38 7.83 16 20 N -0.48 -14.97 18.54 20.01 0.37 -14.60 16 21 C -0.15 -2.87 5.76 -11.53 -0.07 -2.94 16 22 C -0.16 -2.17 9.76 30.60 0.30 -1.87 16 23 C -0.16 -2.42 10.10 30.60 0.31 -2.11 16 24 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 25 H 0.09 1.85 6.30 -2.39 -0.02 1.83 16 26 H 0.05 1.90 6.27 -2.39 -0.01 1.89 16 27 H 0.04 1.84 8.07 -2.39 -0.02 1.82 16 28 H 0.01 0.72 7.37 -2.39 -0.02 0.70 16 29 H 0.27 14.41 8.31 -92.71 -0.77 13.64 16 30 H 0.09 2.69 8.10 -2.39 -0.02 2.67 16 31 H 0.10 2.67 5.55 -2.39 -0.01 2.65 16 32 H 0.12 2.63 7.28 -2.39 -0.02 2.61 16 33 H 0.13 2.81 8.14 -2.39 -0.02 2.79 16 34 H 0.12 2.25 7.74 -2.39 -0.02 2.23 16 35 H 0.11 1.43 6.42 -2.38 -0.02 1.42 16 36 H 0.12 1.21 8.14 -2.39 -0.02 1.20 16 37 H 0.12 1.41 8.14 -2.39 -0.02 1.39 16 38 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 Total: -1.00 -66.25 330.73 7.13 -59.13 By element: Atomic # 1 Polarization: 8.51 SS G_CDS: 1.08 Total: 9.59 kcal Atomic # 6 Polarization: 1.70 SS G_CDS: 4.89 Total: 6.59 kcal Atomic # 7 Polarization: -90.43 SS G_CDS: -1.38 Total: -91.81 kcal Atomic # 8 Polarization: -25.51 SS G_CDS: -0.06 Total: -25.57 kcal Atomic # 9 Polarization: -3.43 SS G_CDS: 0.57 Total: -2.86 kcal Atomic # 14 Polarization: 42.90 SS G_CDS: 2.03 Total: 44.93 kcal Total: -66.25 7.13 -59.13 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000900328508.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.509 kcal (2) G-P(sol) polarization free energy of solvation -66.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds