Wall clock time and date at job start Tue Mar 31 2020 02:54:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 N 1.28942 * 126.47613 * 2 1 4 4 N 1.28569 * 109.62194 * 179.97438 * 3 2 1 5 5 C 1.33360 * 109.89638 * 359.97438 * 4 3 2 6 6 N 1.39922 * 126.25142 * 179.97438 * 5 4 3 7 7 C 1.34777 * 119.99852 * 0.02562 * 6 5 4 8 8 O 1.21583 * 119.99968 * 354.98874 * 7 6 5 9 9 N 1.34778 * 119.99768 * 174.98539 * 7 6 5 10 10 C 1.46930 * 120.63104 * 4.93799 * 9 7 6 11 11 C 1.53618 * 108.54442 * 126.36854 * 10 9 7 12 12 C 1.53044 * 109.23815 * 54.85788 * 11 10 9 13 13 C 1.53044 * 109.54017 * 298.50923 * 12 11 10 14 14 H 1.08999 * 109.49612 * 301.41588 * 13 12 11 15 15 C 1.50697 * 109.50025 * 181.31806 * 13 12 11 16 16 H 1.08004 * 119.99640 * 0.16208 * 15 13 12 17 17 C 1.37869 * 120.00241 * 180.16391 * 15 13 12 18 18 N 1.31519 * 120.00190 * 0.02562 * 17 15 13 19 19 Si 1.86798 * 120.00094 * 179.97438 * 17 15 13 20 20 H 1.48495 * 109.47143 * 60.00207 * 19 17 15 21 21 H 1.48504 * 109.47079 * 180.02562 * 19 17 15 22 22 H 1.48507 * 109.47406 * 299.99980 * 19 17 15 23 23 C 1.46920 * 120.63217 * 185.22541 * 9 7 6 24 24 N 1.31644 * 107.49783 * 0.24411 * 5 4 3 25 25 H 1.09002 * 109.47180 * 90.02641 * 1 2 3 26 26 H 1.09004 * 109.47074 * 210.02094 * 1 2 3 27 27 H 1.08998 * 109.47051 * 330.02095 * 1 2 3 28 28 H 0.96995 * 119.99480 * 180.30169 * 6 5 4 29 29 H 1.09003 * 109.58809 * 246.20919 * 10 9 7 30 30 H 1.09002 * 109.58325 * 6.62759 * 10 9 7 31 31 H 1.09000 * 109.63527 * 294.86951 * 11 10 9 32 32 H 1.08999 * 109.46141 * 174.73693 * 11 10 9 33 33 H 1.09001 * 109.45983 * 178.49329 * 12 11 10 34 34 H 1.08997 * 109.45942 * 58.53481 * 12 11 10 35 35 H 0.96999 * 120.00388 * 179.97438 * 18 17 15 36 36 H 1.09002 * 109.58589 * 353.36403 * 23 9 7 37 37 H 1.09000 * 109.58906 * 113.65342 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2316 1.0368 0.0000 4 7 3.4620 0.6641 0.0005 5 6 3.5328 -0.6677 0.0015 6 7 4.7035 -1.4340 0.0018 7 6 5.9066 -0.8265 0.0016 8 8 5.9764 0.3838 -0.0908 9 7 7.0322 -1.5607 0.1039 10 6 6.9707 -3.0287 0.1077 11 6 7.9114 -3.5599 -0.9845 12 6 9.3141 -2.9893 -0.7631 13 6 9.2684 -1.4632 -0.8679 14 1 8.8888 -1.1771 -1.8488 15 6 10.6555 -0.9043 -0.6820 16 1 11.4875 -1.5710 -0.5092 17 6 10.8625 0.4578 -0.7324 18 7 9.8492 1.2696 -0.9423 19 14 12.5818 1.1505 -0.5012 20 1 13.4782 0.6122 -1.5556 21 1 12.5360 2.6316 -0.5985 22 1 13.0980 0.7584 0.8349 23 6 8.3435 -0.9083 0.2201 24 7 2.3001 -1.1296 -0.0038 25 1 -0.3634 -0.0005 -1.0277 26 1 -0.3633 -0.8898 0.5142 27 1 -0.3633 0.8902 0.5135 28 1 4.6491 -2.4024 -0.0019 29 1 7.2865 -3.4051 1.0807 30 1 5.9503 -3.3522 -0.0978 31 1 7.5446 -3.2540 -1.9643 32 1 7.9491 -4.6480 -0.9335 33 1 9.9908 -3.3851 -1.5205 34 1 9.6703 -3.2749 0.2266 35 1 9.9948 2.2280 -0.9774 36 1 8.2292 0.1677 0.0885 37 1 8.7679 -1.1133 1.2029 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932253680.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:54:25 Heat of formation + Delta-G solvation = 123.087374 kcal Electronic energy + Delta-G solvation = -22053.563572 eV Core-core repulsion = 18677.297718 eV Total energy + Delta-G solvation = -3376.265854 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.139 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -43.00994 -39.96226 -37.10100 -35.24526 -34.04329 -33.28906 -32.05166 -31.51551 -29.73986 -28.25888 -25.15440 -24.94579 -23.10647 -22.62501 -21.86272 -20.23420 -18.95836 -18.13150 -17.48426 -16.94043 -16.45062 -16.08067 -15.06801 -14.72620 -14.38988 -13.96990 -13.81910 -13.77177 -13.45305 -13.37519 -12.90779 -12.60649 -12.34078 -11.96796 -11.82210 -11.38875 -11.00953 -10.90957 -10.64921 -10.53328 -10.45787 -10.38078 -10.22849 -9.90406 -9.55271 -9.11586 -8.98702 -8.96562 -8.41349 -7.78629 -5.96165 -4.06129 1.03655 1.58797 2.42196 2.65077 3.34786 3.41139 3.42090 3.73202 3.96050 4.12897 4.45718 4.70799 4.73958 4.97757 4.99001 5.21274 5.33155 5.40667 5.53877 5.58117 5.91004 6.10238 6.16813 6.27445 6.42996 6.48798 6.60854 6.72305 6.91758 6.96796 7.24487 7.27311 7.68862 7.89292 8.01961 8.22510 8.40106 8.50620 8.95379 9.00040 9.59685 11.08710 Molecular weight = 280.14amu Principal moments of inertia in cm(-1) A = 0.026416 B = 0.004289 C = 0.003753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1059.724288 B = 6527.090377 C = 7458.310598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.108 3.892 2 N -0.213 5.213 3 N 0.005 4.995 4 N -0.276 5.276 5 C 0.451 3.549 6 N -0.638 5.638 7 C 0.695 3.305 8 O -0.522 6.522 9 N -0.611 5.611 10 C 0.111 3.889 11 C -0.133 4.133 12 C -0.110 4.110 13 C 0.040 3.960 14 H 0.030 0.970 15 C -0.524 4.524 16 H 0.058 0.942 17 C 0.064 3.936 18 N -0.877 5.877 19 Si 0.892 3.108 20 H -0.278 1.278 21 H -0.287 1.287 22 H -0.277 1.277 23 C 0.128 3.872 24 N -0.343 5.343 25 H 0.092 0.908 26 H 0.103 0.897 27 H 0.107 0.893 28 H 0.417 0.583 29 H 0.068 0.932 30 H 0.059 0.941 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.052 0.948 34 H 0.051 0.949 35 H 0.265 0.735 36 H 0.126 0.874 37 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.798 -8.782 2.613 19.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.033 4.033 2 N -0.127 5.127 3 N 0.010 4.990 4 N -0.156 5.156 5 C 0.079 3.921 6 N -0.299 5.299 7 C 0.395 3.605 8 O -0.391 6.391 9 N -0.349 5.349 10 C -0.013 4.013 11 C -0.172 4.172 12 C -0.148 4.148 13 C 0.021 3.979 14 H 0.048 0.952 15 C -0.563 4.563 16 H 0.076 0.924 17 C -0.140 4.140 18 N -0.514 5.514 19 Si 0.720 3.280 20 H -0.203 1.203 21 H -0.212 1.212 22 H -0.203 1.203 23 C 0.008 3.992 24 N -0.195 5.195 25 H 0.111 0.889 26 H 0.122 0.878 27 H 0.125 0.875 28 H 0.257 0.743 29 H 0.086 0.914 30 H 0.077 0.923 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.071 0.929 34 H 0.069 0.931 35 H 0.075 0.925 36 H 0.144 0.856 37 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -17.056 -7.207 2.544 18.690 hybrid contribution 0.969 -0.744 0.077 1.224 sum -16.087 -7.951 2.621 18.135 Atomic orbital electron populations 1.22178 0.70045 1.06005 1.05083 1.53129 1.09482 1.00447 1.49649 1.78528 0.95975 1.15081 1.09457 1.75819 1.08017 1.09534 1.22245 1.21267 0.86595 0.88447 0.95809 1.42197 1.00765 1.09319 1.77612 1.15896 0.79410 0.85880 0.79339 1.91104 1.83910 1.10939 1.53130 1.47863 1.06440 1.05420 1.75132 1.21703 0.98584 0.81210 0.99827 1.22025 0.97703 0.99066 0.98366 1.21626 0.93444 0.99209 1.00529 1.18986 0.94790 0.88970 0.95173 0.95165 1.21010 0.92714 0.91715 1.50832 0.92376 1.25062 0.96845 0.97286 0.94801 1.69872 1.29929 1.03741 1.47837 0.86656 0.84739 0.77953 0.78631 1.20332 1.21239 1.20263 1.22360 0.76536 1.01797 0.98530 1.78778 0.99207 1.07823 1.33664 0.88909 0.87802 0.87504 0.74253 0.91417 0.92272 0.92005 0.92069 0.92898 0.93060 0.92452 0.85630 0.93674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.60 11.78 59.85 0.70 1.31 16 2 N -0.21 -2.69 4.75 -16.63 -0.08 -2.77 16 3 N 0.01 0.09 13.24 60.35 0.80 0.89 16 4 N -0.28 -5.48 10.57 30.07 0.32 -5.16 16 5 C 0.45 7.92 8.97 -320.53 -2.87 5.05 16 6 N -0.64 -10.61 5.35 -17.17 -0.09 -10.71 16 7 C 0.69 14.55 8.26 -86.92 -0.72 13.83 16 8 O -0.52 -13.50 14.50 5.29 0.08 -13.42 16 9 N -0.61 -12.09 2.97 -178.23 -0.53 -12.62 16 10 C 0.11 1.62 6.42 -3.49 -0.02 1.59 16 11 C -0.13 -2.03 6.10 -26.39 -0.16 -2.19 16 12 C -0.11 -2.12 5.10 -26.69 -0.14 -2.25 16 13 C 0.04 0.97 2.25 -91.65 -0.21 0.77 16 14 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 15 C -0.52 -14.05 8.56 -34.44 -0.29 -14.34 16 16 H 0.06 1.52 7.74 -52.48 -0.41 1.11 16 17 C 0.06 1.75 5.30 -17.82 -0.09 1.66 16 18 N -0.88 -25.70 11.39 55.43 0.63 -25.07 16 19 Si 0.89 21.26 29.54 -169.99 -5.02 16.24 16 20 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 21 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 22 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 23 C 0.13 3.05 5.41 -3.71 -0.02 3.03 16 24 N -0.34 -5.02 12.79 30.08 0.38 -4.64 16 25 H 0.09 0.36 8.14 -51.93 -0.42 -0.07 16 26 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.11 0.38 8.14 -51.93 -0.42 -0.05 16 28 H 0.42 5.30 6.31 -40.82 -0.26 5.04 16 29 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.06 0.66 5.64 -51.93 -0.29 0.37 16 31 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 33 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.27 7.54 8.31 -40.82 -0.34 7.21 16 36 H 0.13 3.56 5.11 -51.93 -0.27 3.29 16 37 H 0.04 1.06 8.14 -51.93 -0.42 0.64 16 LS Contribution 309.08 15.07 4.66 4.66 Total: -1.00 -35.18 309.08 -7.26 -42.44 By element: Atomic # 1 Polarization: 6.28 SS G_CDS: -4.58 Total: 1.70 kcal Atomic # 6 Polarization: 12.27 SS G_CDS: -3.82 Total: 8.45 kcal Atomic # 7 Polarization: -61.50 SS G_CDS: 1.43 Total: -60.07 kcal Atomic # 8 Polarization: -13.50 SS G_CDS: 0.08 Total: -13.42 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -35.18 -7.26 -42.44 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932253680.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.529 kcal (2) G-P(sol) polarization free energy of solvation -35.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 130.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.442 kcal (6) G-S(sol) free energy of system = (1) + (5) 123.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds