Wall clock time and date at job start Tue Mar 31 2020 02:54:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 N 1.28943 * 126.47710 * 2 1 4 4 N 1.28570 * 109.62659 * 180.02562 * 3 2 1 5 5 C 1.33368 * 109.89205 * 359.97438 * 4 3 2 6 6 N 1.39906 * 126.24963 * 179.97438 * 5 4 3 7 7 C 1.34777 * 120.00706 * 0.03293 * 6 5 4 8 8 O 1.21590 * 119.99600 * 5.00357 * 7 6 5 9 9 N 1.34778 * 120.00525 * 184.72744 * 7 6 5 10 10 C 1.46918 * 120.62923 * 354.76531 * 9 7 6 11 11 C 1.52760 * 109.00946 * 233.58415 * 10 9 7 12 12 C 1.53039 * 109.37843 * 305.58531 * 11 10 9 13 13 C 1.50701 * 109.44739 * 181.25424 * 12 11 10 14 14 H 1.08003 * 119.99818 * 239.94098 * 13 12 11 15 15 C 1.37871 * 120.00303 * 59.93978 * 13 12 11 16 16 N 1.31511 * 120.00038 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00398 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.47293 * 59.99610 * 17 15 13 19 19 H 1.48499 * 109.47477 * 180.02562 * 17 15 13 20 20 H 1.48508 * 109.46828 * 299.99570 * 17 15 13 21 21 C 1.53041 * 109.53875 * 61.24187 * 12 11 10 22 22 C 1.46925 * 120.63013 * 175.04092 * 9 7 6 23 23 N 1.31646 * 107.49272 * 0.26666 * 5 4 3 24 24 H 1.09002 * 109.46984 * 89.96972 * 1 2 3 25 25 H 1.08992 * 109.47068 * 209.97424 * 1 2 3 26 26 H 1.09005 * 109.46976 * 329.97805 * 1 2 3 27 27 H 0.97010 * 119.99852 * 180.02562 * 6 5 4 28 28 H 1.09007 * 109.58757 * 353.41749 * 10 9 7 29 29 H 1.09001 * 109.58948 * 113.83850 * 10 9 7 30 30 H 1.08999 * 109.56554 * 185.55686 * 11 10 9 31 31 H 1.08994 * 109.38800 * 65.51341 * 11 10 9 32 32 H 1.09002 * 109.46528 * 301.21902 * 12 11 10 33 33 H 0.96997 * 120.00605 * 179.97438 * 16 15 13 34 34 H 1.08999 * 109.50102 * 178.68204 * 21 12 11 35 35 H 1.09004 * 109.52555 * 58.59953 * 21 12 11 36 36 H 1.08998 * 109.58845 * 246.15585 * 22 9 7 37 37 H 1.09000 * 109.58596 * 6.44141 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2316 1.0368 0.0000 4 7 3.4620 0.6641 -0.0005 5 6 3.5328 -0.6677 -0.0004 6 7 4.7034 -1.4339 -0.0013 7 6 5.9065 -0.8265 -0.0019 8 8 5.9765 0.3838 0.0903 9 7 7.0323 -1.5612 -0.0990 10 6 6.9714 -3.0291 -0.0897 11 6 7.9060 -3.5590 0.9962 12 6 9.3099 -2.9892 0.7804 13 6 10.2402 -3.5353 1.8327 14 1 10.7479 -2.8614 2.5069 15 6 10.4433 -4.8951 1.9348 16 7 9.8247 -5.7158 1.1142 17 14 11.5960 -5.5721 3.2396 18 1 11.1048 -5.1807 4.5853 19 1 11.6412 -7.0530 3.1401 20 1 12.9589 -5.0206 3.0303 21 6 9.2641 -1.4629 0.8828 22 6 8.3444 -0.9092 -0.2100 23 7 2.3000 -1.1294 -0.0055 24 1 -0.3633 0.0005 -1.0277 25 1 -0.3633 -0.8901 0.5134 26 1 -0.3633 0.8898 0.5142 27 1 4.6491 -2.4025 -0.0015 28 1 5.9512 -3.3512 0.1191 29 1 7.2870 -3.4140 -1.0594 30 1 7.9435 -4.6472 0.9463 31 1 7.5351 -3.2522 1.9741 32 1 9.6705 -3.2762 -0.2074 33 1 9.9679 -6.6725 1.1857 34 1 10.2681 -1.0592 0.7522 35 1 8.8805 -1.1748 1.8616 36 1 8.7743 -1.1178 -1.1897 37 1 8.2294 0.1672 -0.0831 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932266067.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:54:18 Heat of formation + Delta-G solvation = 120.557401 kcal Electronic energy + Delta-G solvation = -21799.379199 eV Core-core repulsion = 18423.003637 eV Total energy + Delta-G solvation = -3376.375562 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.139 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.14439 -40.22192 -37.21375 -35.46845 -34.15386 -33.52259 -32.19747 -30.99369 -30.12688 -28.36757 -26.31348 -23.86231 -23.22279 -22.68433 -22.12957 -20.36454 -19.05622 -18.28870 -17.57424 -17.06723 -16.53068 -16.23432 -15.35215 -15.03842 -14.53787 -14.09082 -13.90163 -13.72411 -13.48592 -13.20836 -12.93079 -12.72315 -12.49159 -11.95264 -11.69347 -11.57413 -11.36155 -10.94892 -10.80492 -10.69822 -10.50416 -10.43675 -10.21194 -9.86218 -9.61853 -9.21273 -9.14656 -9.00110 -8.41306 -8.07492 -6.06582 -4.12421 0.91527 1.45617 2.25029 2.47870 3.28399 3.33104 3.36412 3.44637 3.73231 4.02532 4.38725 4.60690 4.64117 4.91032 4.92985 5.22448 5.40739 5.44516 5.69645 5.85600 5.97427 6.05107 6.11325 6.18782 6.29484 6.38877 6.59587 6.64152 6.90207 7.04593 7.08806 7.25713 7.62117 7.87516 7.88990 7.99463 8.32851 8.36602 8.64638 8.90809 9.52949 10.99034 Molecular weight = 280.14amu Principal moments of inertia in cm(-1) A = 0.036119 B = 0.003534 C = 0.003355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 775.030684 B = 7921.884498 C = 8342.551763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.107 3.893 2 N -0.210 5.210 3 N 0.005 4.995 4 N -0.281 5.281 5 C 0.450 3.550 6 N -0.634 5.634 7 C 0.704 3.296 8 O -0.546 6.546 9 N -0.607 5.607 10 C 0.106 3.894 11 C -0.125 4.125 12 C 0.049 3.951 13 C -0.512 4.512 14 H 0.055 0.945 15 C 0.062 3.938 16 N -0.893 5.893 17 Si 0.891 3.109 18 H -0.278 1.278 19 H -0.288 1.288 20 H -0.277 1.277 21 C -0.125 4.125 22 C 0.129 3.871 23 N -0.337 5.337 24 H 0.094 0.906 25 H 0.105 0.895 26 H 0.107 0.893 27 H 0.424 0.576 28 H 0.055 0.945 29 H 0.069 0.931 30 H 0.107 0.893 31 H 0.040 0.960 32 H 0.029 0.971 33 H 0.261 0.739 34 H 0.063 0.937 35 H 0.053 0.947 36 H 0.063 0.937 37 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.589 5.805 -3.974 18.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.034 4.034 2 N -0.124 5.124 3 N 0.009 4.991 4 N -0.161 5.161 5 C 0.077 3.923 6 N -0.294 5.294 7 C 0.404 3.596 8 O -0.418 6.418 9 N -0.344 5.344 10 C -0.016 4.016 11 C -0.164 4.164 12 C 0.031 3.969 13 C -0.550 4.550 14 H 0.073 0.927 15 C -0.139 4.139 16 N -0.532 5.532 17 Si 0.719 3.281 18 H -0.203 1.203 19 H -0.213 1.213 20 H -0.203 1.203 21 C -0.163 4.163 22 C 0.007 3.993 23 N -0.188 5.188 24 H 0.112 0.888 25 H 0.124 0.876 26 H 0.126 0.874 27 H 0.265 0.735 28 H 0.074 0.926 29 H 0.087 0.913 30 H 0.125 0.875 31 H 0.059 0.941 32 H 0.047 0.953 33 H 0.071 0.929 34 H 0.082 0.918 35 H 0.072 0.928 36 H 0.081 0.919 37 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -16.830 6.927 -3.971 18.628 hybrid contribution 0.669 -1.659 0.761 1.944 sum -16.162 5.268 -3.209 17.299 Atomic orbital electron populations 1.22216 0.69830 1.06182 1.05182 1.53138 1.09587 1.00367 1.49302 1.78497 0.95913 1.15116 1.09573 1.75757 1.08240 1.09500 1.22593 1.21215 0.86596 0.88370 0.96099 1.41988 1.00549 1.09751 1.77115 1.15711 0.79667 0.85450 0.78736 1.91027 1.84622 1.11234 1.54956 1.47461 1.04796 1.07146 1.74983 1.21938 0.99613 0.78004 1.02044 1.21975 0.95717 1.04226 0.94481 1.18623 0.92243 0.88447 0.97604 1.21172 1.25570 0.91747 1.16525 0.92679 1.24951 0.95929 0.97121 0.95939 1.69807 1.42734 1.03153 1.37486 0.86670 0.81496 0.77709 0.82204 1.20339 1.21330 1.20280 1.22039 0.97490 0.99772 0.97014 1.21702 0.80384 0.97599 0.99600 1.78839 0.99186 1.07724 1.33020 0.88793 0.87635 0.87418 0.73498 0.92640 0.91295 0.87526 0.94107 0.95287 0.92902 0.91820 0.92771 0.91881 0.89837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.51 11.78 59.85 0.70 1.22 16 2 N -0.21 -2.44 4.75 -16.63 -0.08 -2.52 16 3 N 0.00 0.07 13.24 60.35 0.80 0.87 16 4 N -0.28 -5.01 10.57 30.07 0.32 -4.69 16 5 C 0.45 7.33 8.97 -320.54 -2.87 4.46 16 6 N -0.63 -9.91 5.35 -17.17 -0.09 -10.00 16 7 C 0.70 12.91 8.26 -86.92 -0.72 12.19 16 8 O -0.55 -11.72 14.50 5.29 0.08 -11.64 16 9 N -0.61 -10.70 2.98 -178.77 -0.53 -11.23 16 10 C 0.11 1.78 6.36 -3.94 -0.03 1.76 16 11 C -0.13 -2.64 5.14 -26.83 -0.14 -2.78 16 12 C 0.05 1.13 2.07 -91.73 -0.19 0.94 16 13 C -0.51 -13.34 8.56 -34.44 -0.29 -13.63 16 14 H 0.05 1.44 7.74 -52.48 -0.41 1.03 16 15 C 0.06 1.62 5.30 -17.82 -0.09 1.52 16 16 N -0.89 -23.88 11.30 55.43 0.63 -23.25 16 17 Si 0.89 20.58 29.54 -169.99 -5.02 15.56 16 18 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 19 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 20 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 21 C -0.12 -2.48 5.30 -26.61 -0.14 -2.62 16 22 C 0.13 2.29 6.44 -3.71 -0.02 2.27 16 23 N -0.34 -4.69 12.79 30.08 0.38 -4.30 16 24 H 0.09 0.28 8.14 -51.93 -0.42 -0.15 16 25 H 0.11 0.34 8.14 -51.93 -0.42 -0.08 16 26 H 0.11 0.29 8.14 -51.93 -0.42 -0.13 16 27 H 0.42 5.47 6.31 -40.82 -0.26 5.21 16 28 H 0.06 0.77 5.65 -51.92 -0.29 0.47 16 29 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 30 H 0.11 2.50 6.03 -51.93 -0.31 2.19 16 31 H 0.04 0.89 8.14 -51.93 -0.42 0.46 16 32 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 33 H 0.26 6.74 8.31 -40.82 -0.34 6.40 16 34 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 35 H 0.05 1.13 8.14 -51.93 -0.42 0.70 16 36 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 37 H 0.08 1.49 6.99 -51.93 -0.36 1.13 16 LS Contribution 308.82 15.07 4.65 4.65 Total: -1.00 -32.56 308.82 -7.23 -39.79 By element: Atomic # 1 Polarization: 6.02 SS G_CDS: -4.57 Total: 1.45 kcal Atomic # 6 Polarization: 9.12 SS G_CDS: -3.79 Total: 5.32 kcal Atomic # 7 Polarization: -56.55 SS G_CDS: 1.42 Total: -55.13 kcal Atomic # 8 Polarization: -11.72 SS G_CDS: 0.08 Total: -11.64 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -32.56 -7.23 -39.79 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932266067.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.352 kcal (2) G-P(sol) polarization free energy of solvation -32.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 127.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.795 kcal (6) G-S(sol) free energy of system = (1) + (5) 120.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds