Wall clock time and date at job start Tue Mar 31 2020 01:51:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 N 1.46506 * 109.47289 * 240.00314 * 2 1 3 5 5 N 1.28947 * 126.47250 * 60.01962 * 4 2 1 6 6 N 1.28577 * 109.61852 * 179.97438 * 5 4 2 7 7 C 1.33359 * 109.89519 * 0.02562 * 6 5 4 8 8 N 1.39910 * 126.25065 * 179.97438 * 7 6 5 9 9 C 1.34783 * 119.99769 * 359.97438 * 8 7 6 10 10 O 1.21585 * 120.00392 * 359.97438 * 9 8 7 11 11 N 1.34779 * 119.99615 * 179.97438 * 9 8 7 12 12 C 1.47075 * 136.05934 * 359.62924 * 11 9 8 13 13 C 1.53753 * 87.88764 * 152.96427 * 12 11 9 14 14 C 1.50696 * 114.26693 * 139.79106 * 13 12 11 15 15 H 1.07997 * 120.00128 * 266.46670 * 14 13 12 16 16 C 1.37882 * 119.99890 * 86.47541 * 14 13 12 17 17 N 1.31516 * 119.99949 * 359.97438 * 16 14 13 18 18 Si 1.86796 * 119.99782 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.47107 * 90.00106 * 18 16 14 20 20 H 1.48508 * 109.47252 * 209.99648 * 18 16 14 21 21 H 1.48494 * 109.47253 * 329.99906 * 18 16 14 22 22 C 1.47067 * 136.05607 * 179.97438 * 11 9 8 23 23 N 1.31653 * 107.49643 * 359.74399 * 7 6 5 24 24 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 25 25 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 27 27 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 28 28 H 1.09002 * 109.46716 * 60.00091 * 3 2 1 29 29 H 1.09000 * 109.47486 * 180.02562 * 3 2 1 30 30 H 1.09001 * 109.47362 * 300.00732 * 3 2 1 31 31 H 0.97003 * 120.00181 * 179.97438 * 8 7 6 32 32 H 1.08998 * 113.46217 * 267.69669 * 12 11 9 33 33 H 1.08997 * 113.46671 * 38.13616 * 12 11 9 34 34 H 1.09001 * 114.39062 * 272.67552 * 13 12 11 35 35 H 0.97001 * 119.99951 * 180.02562 * 17 16 14 36 36 H 1.08995 * 113.47257 * 321.87057 * 22 11 9 37 37 H 1.09005 * 113.46551 * 92.24528 * 22 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 -1.1962 5 7 1.7854 -0.3604 -2.4207 6 7 2.3717 -1.1887 -3.2103 7 6 3.0225 -2.1102 -2.4992 8 7 3.7737 -3.1730 -3.0126 9 6 3.8882 -3.3352 -4.3458 10 8 3.3384 -2.5582 -5.1022 11 7 4.6123 -4.3588 -4.8403 12 6 5.4030 -5.4648 -4.2795 13 6 5.0994 -6.2567 -5.5620 14 6 6.2650 -7.0540 -6.0881 15 1 6.9178 -6.6273 -6.8352 16 6 6.4978 -8.3283 -5.6158 17 7 5.7029 -8.8478 -4.7059 18 14 7.9421 -9.3169 -6.2685 19 1 9.1399 -9.0553 -5.4306 20 1 7.6125 -10.7642 -6.2227 21 1 8.2221 -8.9171 -7.6710 22 6 4.9644 -4.8575 -6.1782 23 7 2.8331 -1.8343 -1.2259 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5139 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 1.6767 1.9563 0.8900 29 1 3.1300 1.4425 -0.0005 30 1 1.6766 1.9564 -0.8899 31 1 4.2121 -3.7932 -2.4092 32 1 6.4592 -5.2249 -4.1573 33 1 4.9631 -5.9021 -3.3833 34 1 4.1686 -6.8231 -5.5316 35 1 5.8669 -9.7441 -4.3733 36 1 4.1511 -4.7775 -6.8994 37 1 5.9045 -4.4567 -6.5574 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000933454859.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:51:59 Heat of formation + Delta-G solvation = 149.237059 kcal Electronic energy + Delta-G solvation = -21204.500156 eV Core-core repulsion = 17829.368237 eV Total energy + Delta-G solvation = -3375.131919 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.139 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.04880 -39.88652 -37.72021 -36.58676 -34.67879 -32.74776 -32.27888 -31.12829 -28.95731 -27.82457 -25.34463 -25.03205 -24.94344 -22.81886 -21.75572 -20.36927 -18.97739 -17.85323 -17.42146 -16.89113 -16.73355 -16.53008 -15.11467 -14.93288 -14.79628 -14.53671 -13.92249 -13.76594 -13.49080 -13.07505 -12.77677 -12.72788 -12.31239 -12.24253 -12.07137 -11.58902 -11.57315 -11.42622 -11.21452 -11.01372 -10.83948 -10.62520 -10.40405 -10.37426 -9.88575 -9.30067 -9.16478 -9.00160 -8.62861 -7.91914 -6.22215 -4.28005 1.04477 1.49939 2.39090 2.54146 3.21950 3.30078 3.33082 3.66111 3.90880 3.98626 4.31167 4.31615 4.49480 4.60635 4.92839 5.01446 5.02883 5.08160 5.21291 5.29318 5.47914 5.64152 5.75080 5.91004 6.09948 6.13729 6.24672 6.35808 6.39942 6.47900 6.54347 6.66240 7.25681 7.51839 7.75855 8.13043 8.37518 8.52155 8.76542 8.88593 9.39238 10.87490 Molecular weight = 280.14amu Principal moments of inertia in cm(-1) A = 0.045583 B = 0.002994 C = 0.002899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 614.111981 B = 9350.594758 C = 9657.272460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.163 3.837 3 C -0.166 4.166 4 N -0.204 5.204 5 N 0.006 4.994 6 N -0.282 5.282 7 C 0.450 3.550 8 N -0.631 5.631 9 C 0.724 3.276 10 O -0.552 6.552 11 N -0.657 5.657 12 C 0.094 3.906 13 C 0.037 3.963 14 C -0.517 4.517 15 H 0.065 0.935 16 C 0.068 3.932 17 N -0.885 5.885 18 Si 0.897 3.103 19 H -0.279 1.279 20 H -0.286 1.286 21 H -0.272 1.272 22 C 0.125 3.875 23 N -0.340 5.340 24 H 0.088 0.912 25 H 0.067 0.933 26 H 0.075 0.925 27 H 0.119 0.881 28 H 0.088 0.912 29 H 0.066 0.934 30 H 0.075 0.925 31 H 0.423 0.577 32 H 0.076 0.924 33 H 0.059 0.941 34 H 0.071 0.929 35 H 0.264 0.736 36 H 0.061 0.939 37 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.347 14.463 12.179 19.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.062 3.938 3 C -0.224 4.224 4 N -0.119 5.119 5 N 0.011 4.989 6 N -0.162 5.162 7 C 0.078 3.922 8 N -0.288 5.288 9 C 0.427 3.573 10 O -0.425 6.425 11 N -0.395 5.395 12 C -0.029 4.029 13 C 0.018 3.982 14 C -0.556 4.556 15 H 0.083 0.917 16 C -0.135 4.135 17 N -0.522 5.522 18 Si 0.724 3.276 19 H -0.205 1.205 20 H -0.211 1.211 21 H -0.196 1.196 22 C 0.003 3.997 23 N -0.190 5.190 24 H 0.106 0.894 25 H 0.086 0.914 26 H 0.094 0.906 27 H 0.137 0.863 28 H 0.106 0.894 29 H 0.085 0.915 30 H 0.094 0.906 31 H 0.261 0.739 32 H 0.094 0.906 33 H 0.077 0.923 34 H 0.089 0.911 35 H 0.074 0.926 36 H 0.079 0.921 37 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -7.203 15.457 11.775 20.724 hybrid contribution 1.393 -1.375 0.395 1.997 sum -5.810 14.082 12.170 19.498 Atomic orbital electron populations 1.22239 0.91911 1.03888 1.04394 1.21688 0.95754 0.93286 0.83096 1.22240 1.02484 0.93299 1.04399 1.53507 1.33437 1.18224 1.06698 1.78405 1.13719 1.18108 0.88678 1.75783 1.13062 1.03275 1.24113 1.21212 0.93408 0.90799 0.86793 1.41712 1.52184 1.27243 1.07690 1.15231 0.80897 0.80910 0.80301 1.91016 1.51123 1.44545 1.55861 1.49145 1.50222 1.26951 1.13144 1.23752 0.94190 0.83488 1.01424 1.20387 0.98868 0.89143 0.89816 1.20899 1.11414 0.99265 1.23973 0.91682 1.25035 0.96446 0.97410 0.94645 1.69949 1.37248 1.16396 1.28618 0.86516 0.82326 0.79196 0.79549 1.20519 1.21136 1.19633 1.23320 0.98617 0.94241 0.83525 1.78835 1.18882 1.05111 1.16152 0.89363 0.91413 0.90572 0.86307 0.89369 0.91464 0.90577 0.73922 0.90585 0.92292 0.91108 0.92588 0.92065 0.90700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.00 9.41 37.16 0.35 -0.65 16 2 C 0.16 1.25 3.97 -67.93 -0.27 0.98 16 3 C -0.17 -0.98 9.41 37.16 0.35 -0.63 16 4 N -0.20 -2.67 4.06 -4.89 -0.02 -2.69 16 5 N 0.01 0.10 12.99 60.35 0.78 0.88 16 6 N -0.28 -5.45 10.55 30.07 0.32 -5.13 16 7 C 0.45 8.05 8.97 -320.54 -2.88 5.18 16 8 N -0.63 -11.11 5.44 -17.17 -0.09 -11.21 16 9 C 0.72 15.02 8.76 -86.91 -0.76 14.26 16 10 O -0.55 -13.23 15.84 5.29 0.08 -13.15 16 11 N -0.66 -13.26 3.69 -190.84 -0.70 -13.96 16 12 C 0.09 1.88 7.87 -8.36 -0.07 1.82 16 13 C 0.04 0.84 3.79 -91.13 -0.35 0.50 16 14 C -0.52 -12.78 8.83 -34.44 -0.30 -13.08 16 15 H 0.07 1.57 7.81 -52.49 -0.41 1.16 16 16 C 0.07 1.74 5.46 -17.82 -0.10 1.64 16 17 N -0.89 -23.57 13.26 55.43 0.74 -22.84 16 18 Si 0.90 19.68 29.54 -169.99 -5.02 14.66 16 19 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 20 H -0.29 -6.31 7.11 56.52 0.40 -5.91 16 21 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 22 C 0.12 2.55 8.17 -8.51 -0.07 2.48 16 23 N -0.34 -5.23 12.79 30.08 0.38 -4.84 16 24 H 0.09 0.28 8.14 -51.93 -0.42 -0.15 16 25 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.12 0.73 8.14 -51.93 -0.42 0.30 16 28 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 31 H 0.42 6.31 8.54 -40.82 -0.35 5.96 16 32 H 0.08 1.49 8.10 -51.93 -0.42 1.07 16 33 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 34 H 0.07 1.76 8.11 -51.93 -0.42 1.34 16 35 H 0.26 6.73 8.31 -40.82 -0.34 6.39 16 36 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 37 H 0.07 1.45 8.10 -51.93 -0.42 1.03 16 LS Contribution 326.37 15.07 4.92 4.92 Total: -1.00 -31.52 326.37 -7.66 -39.18 By element: Atomic # 1 Polarization: 6.64 SS G_CDS: -4.96 Total: 1.68 kcal Atomic # 6 Polarization: 16.57 SS G_CDS: -4.09 Total: 12.48 kcal Atomic # 7 Polarization: -61.19 SS G_CDS: 1.40 Total: -59.79 kcal Atomic # 8 Polarization: -13.23 SS G_CDS: 0.08 Total: -13.15 kcal Atomic # 14 Polarization: 19.68 SS G_CDS: -5.02 Total: 14.66 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -31.52 -7.66 -39.18 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000933454859.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 188.421 kcal (2) G-P(sol) polarization free energy of solvation -31.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 156.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.184 kcal (6) G-S(sol) free energy of system = (1) + (5) 149.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds