Wall clock time and date at job start Tue Mar 31 2020 02:19:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.46832 * 2 1 4 4 C 1.53006 * 109.47127 * 119.99679 * 2 1 3 5 5 C 1.50699 * 109.47053 * 184.99965 * 4 2 1 6 6 C 1.38671 * 120.41662 * 90.00448 * 5 4 2 7 7 C 1.38625 * 118.42008 * 180.02562 * 6 5 4 8 8 C 1.38220 * 119.16455 * 359.97438 * 7 6 5 9 9 N 1.31865 * 120.76095 * 0.02562 * 8 7 6 10 10 C 1.31879 * 121.72390 * 359.70171 * 9 8 7 11 11 N 1.46899 * 109.47254 * 239.99813 * 2 1 3 12 12 C 1.46900 * 110.99567 * 85.00010 * 11 2 1 13 13 C 1.53007 * 109.46744 * 179.97438 * 12 11 2 14 14 C 1.53001 * 109.46968 * 179.97438 * 13 12 11 15 15 S 1.81001 * 109.47097 * 179.97438 * 14 13 12 16 16 C 1.76198 * 99.99961 * 179.97438 * 15 14 13 17 17 H 1.08003 * 120.00198 * 0.02562 * 16 15 14 18 18 C 1.38799 * 119.99811 * 180.02562 * 16 15 14 19 19 N 1.31627 * 120.00155 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 119.99954 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47104 * 359.97438 * 20 18 16 22 22 H 1.48496 * 109.47609 * 119.99818 * 20 18 16 23 23 H 1.48503 * 109.46698 * 239.99916 * 20 18 16 24 24 H 1.09004 * 109.47261 * 300.00019 * 1 2 3 25 25 H 1.09002 * 109.47153 * 60.00191 * 1 2 3 26 26 H 1.09001 * 109.47289 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47395 * 305.00572 * 4 2 1 28 28 H 1.09004 * 109.46579 * 64.99848 * 4 2 1 29 29 H 1.08006 * 120.78965 * 359.97438 * 6 5 4 30 30 H 1.08006 * 120.41838 * 180.02562 * 7 6 5 31 31 H 1.08000 * 119.62558 * 179.97438 * 8 7 6 32 32 H 1.07997 * 119.61810 * 180.31120 * 10 9 8 33 33 H 1.00903 * 110.99887 * 208.95238 * 11 2 1 34 34 H 1.08995 * 109.47661 * 299.99688 * 12 11 2 35 35 H 1.08995 * 109.47175 * 60.00477 * 12 11 2 36 36 H 1.09003 * 109.47186 * 300.00128 * 13 12 11 37 37 H 1.09005 * 109.46902 * 60.00320 * 13 12 11 38 38 H 1.09003 * 109.47292 * 300.00088 * 14 13 12 39 39 H 1.09003 * 109.46927 * 59.99886 * 14 13 12 40 40 H 0.97001 * 120.00218 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5419 -0.6149 1.3128 6 6 4.1433 0.4490 1.9681 7 6 5.5280 0.5061 2.0007 8 6 6.2580 -0.4924 1.3838 9 7 5.6521 -1.4896 0.7696 10 6 4.3371 -1.5790 0.7233 11 7 2.0197 -0.6925 -1.1994 12 6 2.0824 0.2226 -2.3468 13 6 2.5963 -0.5329 -3.5741 14 6 2.6611 0.4200 -4.7694 15 16 3.2696 -0.4735 -6.2211 16 6 3.2434 0.8244 -7.4124 17 1 2.9140 1.8127 -7.1272 18 6 3.6461 0.5768 -8.7174 19 7 4.0481 -0.6275 -9.0649 20 14 3.6191 1.9530 -9.9803 21 1 3.1305 3.2014 -9.3415 22 1 4.9908 2.1695 -10.5061 23 1 2.7136 1.5819 -11.0973 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 1.6053 -0.2618 2.1370 28 1 1.7516 -1.7715 1.2057 29 1 3.5471 1.2153 2.4411 30 1 6.0301 1.3201 2.5025 31 1 7.3372 -0.4551 1.4043 32 1 3.8764 -2.4132 0.2151 33 1 2.9173 -1.1205 -1.0286 34 1 1.0871 0.6163 -2.5525 35 1 2.7588 1.0461 -2.1181 36 1 3.5918 -0.9263 -3.3682 37 1 1.9202 -1.3567 -3.8030 38 1 1.6654 0.8130 -4.9752 39 1 3.3368 1.2442 -4.5407 40 1 4.3299 -0.8004 -9.9768 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000934237531.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:19:32 Heat of formation + Delta-G solvation = -11.774700 kcal Electronic energy + Delta-G solvation = -18722.584514 eV Core-core repulsion = 15854.471065 eV Total energy + Delta-G solvation = -2868.113449 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 280.130 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.24693 -38.61642 -35.59711 -34.61796 -33.50283 -32.52652 -30.91884 -27.87467 -27.71204 -26.01200 -24.53665 -23.26590 -22.41318 -21.24742 -19.55675 -18.02110 -17.42350 -17.19909 -16.91323 -16.56539 -16.26567 -15.99697 -15.62655 -14.97320 -14.77990 -14.59377 -14.05612 -13.92868 -13.75131 -13.51078 -13.32600 -13.17709 -12.95306 -12.83254 -12.74185 -12.52649 -12.24487 -12.16009 -11.97019 -11.66961 -11.35003 -11.16772 -10.72363 -10.37114 -10.33962 -9.90125 -9.42149 -8.68826 -8.38629 -6.15559 0.14288 0.34015 1.30329 1.37665 1.48647 1.72485 2.26760 2.82959 2.95471 3.13159 3.33474 3.53323 3.78157 3.91127 3.95536 4.01704 4.08551 4.12507 4.22201 4.29971 4.38725 4.46170 4.51669 4.61590 4.71521 4.75463 4.85384 4.87660 4.98380 4.99393 5.12040 5.17076 5.19141 5.26526 5.34136 5.38189 5.45902 5.78901 6.08648 6.16857 6.39083 7.03272 7.03920 8.71198 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.021327 B = 0.003093 C = 0.002875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1312.589052 B = 9050.938394 C = 9736.318361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.087 3.913 3 H 0.041 0.959 4 C -0.072 4.072 5 C -0.141 4.141 6 C -0.079 4.079 7 C -0.168 4.168 8 C 0.074 3.926 9 N -0.515 5.515 10 C 0.078 3.922 11 N -0.691 5.691 12 C 0.077 3.923 13 C -0.084 4.084 14 C -0.087 4.087 15 S -0.199 6.199 16 C -0.539 4.539 17 H 0.072 0.928 18 C 0.014 3.986 19 N -0.908 5.908 20 Si 0.996 3.004 21 H -0.262 1.262 22 H -0.271 1.271 23 H -0.270 1.270 24 H 0.077 0.923 25 H 0.045 0.955 26 H 0.061 0.939 27 H 0.106 0.894 28 H 0.088 0.912 29 H 0.159 0.841 30 H 0.162 0.838 31 H 0.170 0.830 32 H 0.157 0.843 33 H 0.338 0.662 34 H 0.077 0.923 35 H 0.025 0.975 36 H 0.055 0.945 37 H 0.069 0.931 38 H 0.064 0.936 39 H 0.058 0.942 40 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.235 3.986 26.113 26.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.022 4.022 3 H 0.059 0.941 4 C -0.110 4.110 5 C -0.143 4.143 6 C -0.104 4.104 7 C -0.188 4.188 8 C -0.083 4.083 9 N -0.224 5.224 10 C -0.078 4.078 11 N -0.325 5.325 12 C -0.054 4.054 13 C -0.123 4.123 14 C -0.236 4.236 15 S 0.030 5.970 16 C -0.687 4.687 17 H 0.090 0.910 18 C -0.191 4.191 19 N -0.544 5.544 20 Si 0.818 3.182 21 H -0.186 1.186 22 H -0.196 1.196 23 H -0.195 1.195 24 H 0.095 0.905 25 H 0.064 0.936 26 H 0.080 0.920 27 H 0.125 0.875 28 H 0.107 0.893 29 H 0.177 0.823 30 H 0.180 0.820 31 H 0.187 0.813 32 H 0.174 0.826 33 H 0.159 0.841 34 H 0.096 0.904 35 H 0.043 0.957 36 H 0.073 0.927 37 H 0.088 0.912 38 H 0.083 0.917 39 H 0.076 0.924 40 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -2.964 1.882 25.288 25.531 hybrid contribution 0.253 2.821 -0.432 2.865 sum -2.711 4.703 24.856 25.442 Atomic orbital electron populations 1.21785 0.93255 1.02597 1.01873 1.21584 0.96534 0.95594 0.88535 0.94108 1.20777 0.88766 1.03105 0.98386 1.21127 0.98030 0.96098 0.99073 1.21895 0.95248 0.97148 0.96150 1.22492 0.95004 1.00630 1.00650 1.23215 1.01759 0.90012 0.93308 1.67678 1.12302 1.25334 1.17038 1.22932 0.89156 0.98759 0.96951 1.60649 1.33705 1.33420 1.04717 1.21829 1.00540 0.93294 0.89746 1.21129 1.01317 0.97673 0.92169 1.23137 1.02334 1.01027 0.97100 1.84679 1.86297 1.21100 1.04925 1.23073 1.51452 0.97044 0.97099 0.90953 1.26101 0.93730 0.99261 0.99960 1.70166 1.42058 1.22346 1.19826 0.84938 0.78403 0.77591 0.77251 1.18631 1.19610 1.19535 0.90454 0.93610 0.91998 0.87539 0.89334 0.82328 0.82025 0.81300 0.82575 0.84135 0.90437 0.95696 0.92670 0.91242 0.91679 0.92358 0.91920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.09 9.41 71.98 0.68 -1.41 16 2 C 0.09 1.48 2.64 44.92 0.12 1.59 16 3 H 0.04 0.73 7.80 -2.39 -0.02 0.71 16 4 C -0.07 -0.94 5.00 29.85 0.15 -0.79 16 5 C -0.14 -2.34 4.84 -19.77 -0.10 -2.43 16 6 C -0.08 -1.10 9.86 22.47 0.22 -0.88 16 7 C -0.17 -2.40 10.11 22.36 0.23 -2.18 16 8 C 0.07 1.39 11.18 84.68 0.95 2.34 16 9 N -0.51 -12.50 10.36 -195.85 -2.03 -14.53 16 10 C 0.08 1.66 9.22 84.67 0.78 2.44 16 11 N -0.69 -15.85 6.31 -491.56 -3.10 -18.95 16 12 C 0.08 2.08 5.48 86.31 0.47 2.55 16 13 C -0.08 -2.88 5.48 30.60 0.17 -2.71 16 14 C -0.09 -3.64 5.67 71.98 0.41 -3.23 16 15 S -0.20 -10.97 21.44 -56.49 -1.21 -12.18 16 16 C -0.54 -31.95 9.50 67.95 0.65 -31.31 16 17 H 0.07 4.13 7.80 -2.91 -0.02 4.11 16 18 C 0.01 0.83 5.49 84.86 0.47 1.30 16 19 N -0.91 -55.86 13.22 21.65 0.29 -55.58 16 20 Si 1.00 44.65 29.55 68.60 2.03 46.67 16 21 H -0.26 -11.23 7.11 99.48 0.71 -10.52 16 22 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 23 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 24 H 0.08 0.82 8.14 -2.38 -0.02 0.80 16 25 H 0.04 0.81 7.45 -2.39 -0.02 0.79 16 26 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 27 H 0.11 0.89 8.10 -2.39 -0.02 0.87 16 28 H 0.09 1.16 8.09 -2.39 -0.02 1.14 16 29 H 0.16 1.31 8.06 -2.91 -0.02 1.28 16 30 H 0.16 1.31 8.06 -2.91 -0.02 1.28 16 31 H 0.17 2.41 8.06 -2.91 -0.02 2.38 16 32 H 0.16 3.10 7.55 -2.91 -0.02 3.08 16 33 H 0.34 7.95 5.54 -89.69 -0.50 7.45 16 34 H 0.08 2.03 7.44 -2.39 -0.02 2.01 16 35 H 0.02 0.68 8.05 -2.39 -0.02 0.66 16 36 H 0.05 1.96 8.14 -2.39 -0.02 1.95 16 37 H 0.07 2.47 8.14 -2.38 -0.02 2.45 16 38 H 0.06 2.67 8.14 -2.39 -0.02 2.65 16 39 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 40 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 Total: -1.00 -71.68 345.26 1.67 -70.01 By element: Atomic # 1 Polarization: 18.75 SS G_CDS: 0.51 Total: 19.26 kcal Atomic # 6 Polarization: -39.90 SS G_CDS: 5.19 Total: -34.71 kcal Atomic # 7 Polarization: -84.21 SS G_CDS: -4.84 Total: -89.05 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 2.03 Total: 46.67 kcal Atomic # 16 Polarization: -10.97 SS G_CDS: -1.21 Total: -12.18 kcal Total: -71.68 1.67 -70.01 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000934237531.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.239 kcal (2) G-P(sol) polarization free energy of solvation -71.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds