Wall clock time and date at job start Tue Mar 31 2020 02:21:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.46725 * 2 1 4 4 C 1.52998 * 109.47345 * 239.99390 * 2 1 3 5 5 C 1.50704 * 109.46952 * 175.68479 * 4 2 1 6 6 H 1.07995 * 120.00022 * 354.98449 * 5 4 2 7 7 C 1.37876 * 119.99730 * 174.99076 * 5 4 2 8 8 N 1.31518 * 120.00061 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 119.99739 * 179.97438 * 7 5 4 10 10 H 1.48505 * 109.46983 * 90.00472 * 9 7 5 11 11 H 1.48506 * 109.46903 * 209.99888 * 9 7 5 12 12 H 1.48493 * 109.47497 * 330.00208 * 9 7 5 13 13 N 1.46906 * 109.47026 * 119.99461 * 2 1 3 14 14 C 1.47849 * 110.99780 * 298.83256 * 13 2 1 15 15 C 1.55118 * 104.90305 * 146.24266 * 14 13 2 16 16 C 1.55141 * 101.55761 * 323.15859 * 15 14 13 17 17 H 1.09003 * 110.70387 * 276.96833 * 16 15 14 18 18 C 1.53000 * 110.70593 * 153.90859 * 16 15 14 19 19 C 1.50692 * 109.47464 * 68.80100 * 18 16 15 20 20 N 1.29030 * 124.91200 * 89.95496 * 19 18 16 21 21 C 1.31791 * 117.12161 * 179.74974 * 20 19 18 22 22 C 1.33639 * 114.49955 * 0.53037 * 21 20 19 23 23 S 1.70975 * 124.92214 * 270.00595 * 19 18 16 24 24 C 1.47441 * 111.00033 * 59.67476 * 13 2 1 25 25 H 1.09000 * 109.47558 * 306.16193 * 1 2 3 26 26 H 1.08997 * 109.47007 * 66.16880 * 1 2 3 27 27 H 1.09004 * 109.46811 * 186.16654 * 1 2 3 28 28 H 1.08995 * 109.47262 * 295.68703 * 4 2 1 29 29 H 1.09004 * 109.46824 * 55.68822 * 4 2 1 30 30 H 0.96998 * 119.99726 * 180.02562 * 8 7 5 31 31 H 1.09002 * 110.37018 * 265.19238 * 14 13 2 32 32 H 1.08996 * 110.37350 * 27.42452 * 14 13 2 33 33 H 1.08998 * 111.14627 * 205.04637 * 15 14 13 34 34 H 1.08998 * 110.92055 * 81.16394 * 15 14 13 35 35 H 1.09005 * 109.47112 * 308.80175 * 18 16 15 36 36 H 1.09001 * 109.47226 * 188.80545 * 18 16 15 37 37 H 1.07998 * 122.75078 * 180.33275 * 21 20 19 38 38 H 1.08001 * 126.04003 * 179.78785 * 22 21 20 39 39 H 1.09005 * 109.88135 * 117.33337 * 24 13 2 40 40 H 1.08997 * 109.88921 * 356.15013 * 24 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7214 -1.2491 5 6 3.5433 -0.6294 -1.3037 6 1 4.0752 -0.0409 -0.5709 7 6 4.2394 -1.2966 -2.2892 8 7 3.5915 -2.0128 -3.1819 9 14 6.1027 -1.1820 -2.3572 10 1 6.6958 -2.2746 -1.5450 11 1 6.5554 -1.3106 -3.7657 12 1 6.5381 0.1301 -1.8152 13 7 2.0197 -0.6924 1.1996 14 6 1.5687 -0.0058 2.4288 15 6 1.3499 -1.1413 3.4626 16 6 0.7784 -2.2716 2.5666 17 1 -0.2934 -2.1406 2.4177 18 6 1.0745 -3.6447 3.1732 19 6 0.2687 -3.8212 4.4342 20 7 -0.9173 -4.3266 4.4881 21 6 -1.4800 -4.4135 5.6767 22 6 -0.7311 -3.9457 6.6798 23 16 0.7929 -3.3797 6.0006 24 6 1.5405 -2.0863 1.2377 25 1 -0.3634 0.6064 0.8297 26 1 -0.3633 0.4152 -0.9400 27 1 -0.3633 -1.0218 0.1104 28 1 1.7412 -1.7689 -1.2112 29 1 1.6150 -0.2541 -2.1375 30 1 4.0813 -2.4824 -3.8750 31 1 2.3345 0.6858 2.7798 32 1 0.6342 0.5247 2.2460 33 1 0.6293 -0.8455 4.2251 34 1 2.2943 -1.4423 3.9159 35 1 2.1366 -3.7170 3.4076 36 1 0.8064 -4.4230 2.4587 37 1 -2.4667 -4.8259 5.8273 38 1 -1.0091 -3.9229 7.7232 39 1 2.3879 -2.7708 1.1975 40 1 0.8713 -2.2715 0.3975 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000934333543.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:21:11 Heat of formation + Delta-G solvation = 42.391634 kcal Electronic energy + Delta-G solvation = -19875.116388 eV Core-core repulsion = 17009.351767 eV Total energy + Delta-G solvation = -2865.764621 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 280.130 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.90132 -39.02814 -34.96396 -32.74983 -31.48276 -29.47425 -28.30546 -27.30699 -26.62328 -23.84923 -23.18369 -21.31299 -20.77629 -19.53496 -18.53166 -18.10723 -16.30167 -16.09567 -15.62651 -15.06296 -14.48410 -14.30153 -14.14851 -13.72966 -13.54841 -13.11033 -12.96328 -12.39222 -12.18917 -11.73066 -11.71456 -11.58516 -11.42849 -11.27150 -10.87063 -10.79569 -10.61799 -10.58569 -10.36562 -10.30795 -9.89534 -9.71619 -9.51762 -9.10237 -9.00956 -8.96275 -8.23052 -7.41948 -5.86185 -3.83914 0.57234 1.23296 1.62910 2.70683 3.41348 3.47162 3.51461 4.01818 4.58235 4.65065 4.79977 4.87926 4.90290 4.99640 5.29205 5.29629 5.46688 5.51051 5.56872 5.64879 5.76933 5.89018 5.92402 5.97426 6.02738 6.04022 6.07575 6.11706 6.35728 6.46961 6.54737 6.69055 6.73699 7.01574 7.55959 7.62230 7.71361 7.88383 8.05063 8.15182 8.60589 9.21824 9.77637 11.25758 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.025461 B = 0.003935 C = 0.003780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1099.458516 B = 7113.769073 C = 7406.144217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.079 3.921 3 H 0.069 0.931 4 C 0.028 3.972 5 C -0.489 4.489 6 H 0.060 0.940 7 C 0.051 3.949 8 N -0.904 5.904 9 Si 0.890 3.110 10 H -0.283 1.283 11 H -0.291 1.291 12 H -0.275 1.275 13 N -0.499 5.499 14 C 0.035 3.965 15 C -0.126 4.126 16 C -0.104 4.104 17 H 0.076 0.924 18 C -0.037 4.037 19 C 0.069 3.931 20 N -0.480 5.480 21 C 0.040 3.960 22 C -0.273 4.273 23 S 0.119 5.881 24 C 0.056 3.944 25 H 0.041 0.959 26 H 0.056 0.944 27 H 0.052 0.948 28 H 0.024 0.976 29 H 0.014 0.986 30 H 0.257 0.743 31 H 0.072 0.928 32 H 0.044 0.956 33 H 0.063 0.937 34 H 0.074 0.926 35 H 0.091 0.909 36 H 0.098 0.902 37 H 0.173 0.827 38 H 0.174 0.826 39 H 0.078 0.922 40 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.349 -2.330 19.095 20.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.029 4.029 3 H 0.087 0.913 4 C -0.009 4.009 5 C -0.528 4.528 6 H 0.078 0.922 7 C -0.148 4.148 8 N -0.545 5.545 9 Si 0.718 3.282 10 H -0.209 1.209 11 H -0.217 1.217 12 H -0.200 1.200 13 N -0.222 5.222 14 C -0.092 4.092 15 C -0.164 4.164 16 C -0.125 4.125 17 H 0.094 0.906 18 C -0.079 4.079 19 C -0.208 4.208 20 N -0.194 5.194 21 C -0.111 4.111 22 C -0.412 4.412 23 S 0.373 5.627 24 C -0.072 4.072 25 H 0.060 0.940 26 H 0.075 0.925 27 H 0.071 0.929 28 H 0.042 0.958 29 H 0.033 0.967 30 H 0.066 0.934 31 H 0.090 0.910 32 H 0.062 0.938 33 H 0.082 0.918 34 H 0.092 0.908 35 H 0.110 0.890 36 H 0.116 0.884 37 H 0.190 0.810 38 H 0.191 0.809 39 H 0.096 0.904 40 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -7.107 -2.150 18.826 20.238 hybrid contribution -0.889 -0.406 0.184 0.995 sum -7.996 -2.557 19.011 20.782 Atomic orbital electron populations 1.22570 0.99841 1.01134 1.00892 1.22043 0.89940 0.98602 0.92325 0.91271 1.19239 0.96399 0.95576 0.89726 1.21161 0.91654 1.28692 1.11276 0.92211 1.24996 0.97993 0.95859 0.95993 1.69966 1.35148 1.32758 1.16625 0.86633 0.86484 0.78323 0.76735 1.20907 1.21673 1.20043 1.63762 1.56667 1.00853 1.00888 1.23118 0.98892 0.96460 0.90777 1.22849 1.00636 0.95635 0.97247 1.22474 1.00594 0.92661 0.96746 0.90598 1.20384 0.97848 0.99215 0.90406 1.27267 0.94564 0.99395 0.99614 1.66321 1.08892 1.17541 1.26680 1.21820 1.01695 1.01383 0.86224 1.27062 0.98490 1.10666 1.05014 1.84106 1.17770 1.58290 1.02548 1.22788 0.98146 0.91924 0.94353 0.93963 0.92513 0.92883 0.95811 0.96736 0.93352 0.90966 0.93824 0.91839 0.90774 0.89042 0.88377 0.81004 0.80853 0.90419 0.91691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.21 8.59 37.16 0.32 -2.89 16 2 C 0.08 1.61 2.33 -67.71 -0.16 1.45 16 3 H 0.07 1.45 8.14 -51.93 -0.42 1.02 16 4 C 0.03 0.70 4.28 -27.88 -0.12 0.58 16 5 C -0.49 -13.68 8.82 -34.44 -0.30 -13.99 16 6 H 0.06 1.68 7.75 -52.49 -0.41 1.27 16 7 C 0.05 1.46 5.46 -17.82 -0.10 1.36 16 8 N -0.90 -27.20 13.29 55.43 0.74 -26.46 16 9 Si 0.89 22.05 29.54 -169.99 -5.02 17.03 16 10 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 11 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 12 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 13 N -0.50 -9.36 4.90 -223.15 -1.09 -10.45 16 14 C 0.04 0.54 6.49 -2.18 -0.01 0.52 16 15 C -0.13 -1.61 5.89 -24.48 -0.14 -1.76 16 16 C -0.10 -1.42 2.93 -88.80 -0.26 -1.68 16 17 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 18 C -0.04 -0.46 5.16 -27.89 -0.14 -0.60 16 19 C 0.07 0.84 6.30 -13.46 -0.08 0.76 16 20 N -0.48 -6.30 10.54 -11.86 -0.13 -6.42 16 21 C 0.04 0.42 11.35 -19.18 -0.22 0.20 16 22 C -0.27 -2.47 11.37 29.12 0.33 -2.14 16 23 S 0.12 1.18 22.88 -107.50 -2.46 -1.28 16 24 C 0.06 0.97 5.04 -2.84 -0.01 0.96 16 25 H 0.04 0.65 6.29 -51.93 -0.33 0.32 16 26 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 27 H 0.05 0.91 6.15 -51.93 -0.32 0.59 16 28 H 0.02 0.64 6.41 -51.93 -0.33 0.30 16 29 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 31 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 32 H 0.04 0.64 5.70 -51.93 -0.30 0.35 16 33 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.07 0.92 7.98 -51.93 -0.41 0.51 16 35 H 0.09 1.03 8.06 -51.93 -0.42 0.61 16 36 H 0.10 1.22 8.14 -51.93 -0.42 0.80 16 37 H 0.17 1.35 8.06 -52.49 -0.42 0.93 16 38 H 0.17 1.06 8.06 -52.49 -0.42 0.64 16 39 H 0.08 1.43 7.82 -51.93 -0.41 1.03 16 40 H 0.06 1.22 4.82 -51.93 -0.25 0.97 16 LS Contribution 328.85 15.07 4.96 4.96 Total: -1.00 -30.95 328.85 -10.02 -40.98 By element: Atomic # 1 Polarization: 4.98 SS G_CDS: -6.11 Total: -1.13 kcal Atomic # 6 Polarization: -16.31 SS G_CDS: -0.91 Total: -17.22 kcal Atomic # 7 Polarization: -42.86 SS G_CDS: -0.48 Total: -43.34 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Atomic # 16 Polarization: 1.18 SS G_CDS: -2.46 Total: -1.28 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -30.95 -10.02 -40.98 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000934333543.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.368 kcal (2) G-P(sol) polarization free energy of solvation -30.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.977 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds