Wall clock time and date at job start Tue Mar 31 2020 02:52:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36934 * 119.99925 * 2 1 4 4 H 1.07999 * 119.99796 * 148.41698 * 3 2 1 5 5 C 1.38813 * 120.00284 * 328.42064 * 3 2 1 6 6 N 1.31616 * 119.99927 * 153.91750 * 5 3 2 7 7 Si 1.86798 * 119.99753 * 333.91460 * 5 3 2 8 8 H 1.48507 * 109.47099 * 94.93730 * 7 5 3 9 9 H 1.48501 * 109.47185 * 214.93074 * 7 5 3 10 10 H 1.48499 * 109.47419 * 334.93911 * 7 5 3 11 11 C 1.46499 * 119.99717 * 179.97438 * 2 1 3 12 12 H 1.08997 * 110.88026 * 183.88210 * 11 2 1 13 13 C 1.55154 * 111.00315 * 60.00323 * 11 2 1 14 14 C 1.54323 * 103.10499 * 206.33208 * 13 11 2 15 15 N 1.47491 * 107.03057 * 22.24125 * 14 13 11 16 16 C 1.34778 * 125.59074 * 181.08481 * 15 14 13 17 17 O 1.21539 * 119.99554 * 179.97438 * 16 15 14 18 18 C 1.48000 * 119.99950 * 359.93339 * 16 15 14 19 19 N 1.34190 * 126.70061 * 359.68347 * 18 16 15 20 20 N 1.28982 * 107.25124 * 179.89498 * 19 18 16 21 21 N 1.28716 * 108.99011 * 0.37670 * 20 19 18 22 22 C 1.46500 * 125.32335 * 179.72644 * 21 20 19 23 23 N 1.28875 * 109.35967 * 359.75678 * 21 20 19 24 24 C 1.47426 * 108.76048 * 1.02602 * 15 14 13 25 25 H 1.08999 * 109.47810 * 275.54060 * 1 2 3 26 26 H 1.09009 * 109.47137 * 35.53630 * 1 2 3 27 27 H 1.08998 * 109.47270 * 155.53048 * 1 2 3 28 28 H 0.97006 * 119.99540 * 179.97438 * 6 5 3 29 29 H 1.09000 * 110.72239 * 324.78858 * 13 11 2 30 30 H 1.09002 * 110.72124 * 87.88328 * 13 11 2 31 31 H 1.08997 * 109.88500 * 141.69834 * 14 13 11 32 32 H 1.09002 * 109.88443 * 262.86856 * 14 13 11 33 33 H 1.08996 * 109.46883 * 270.03919 * 22 21 20 34 34 H 1.09002 * 109.46806 * 30.03711 * 22 21 20 35 35 H 1.09007 * 109.47316 * 150.03592 * 22 21 20 36 36 H 1.09003 * 110.36902 * 217.05061 * 24 15 14 37 37 H 1.09001 * 110.36696 * 94.73373 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1097 1.2551 0.4899 5 6 1.6098 2.2991 -0.6295 6 7 1.9476 3.5078 -0.2329 7 14 0.4041 2.0815 -2.0395 8 1 -0.9847 2.1422 -1.5171 9 1 0.6060 3.1647 -3.0352 10 1 0.6321 0.7648 -2.6872 11 6 2.1974 -1.2688 0.0006 12 1 3.2716 -1.0972 0.0694 13 6 1.8483 -2.1130 -1.2535 14 6 2.1073 -3.5602 -0.7843 15 7 2.0263 -3.5578 0.6884 16 6 2.2143 -4.6278 1.4860 17 8 2.1234 -4.5100 2.6923 18 6 2.5306 -5.9464 0.8930 19 7 2.6557 -6.2293 -0.4128 20 7 2.9363 -7.4846 -0.5071 21 7 2.9831 -7.9933 0.6744 22 6 3.2685 -9.3970 0.9816 23 7 2.7391 -7.0748 1.5449 24 6 1.7073 -2.1923 1.1435 25 1 -0.3635 0.0992 1.0228 26 1 -0.3634 0.8363 -0.5973 27 1 -0.3634 -0.9353 -0.4257 28 1 1.5706 4.2856 -0.6732 29 1 0.8026 -1.9785 -1.5301 30 1 2.5023 -1.8549 -2.0865 31 1 1.3500 -4.2254 -1.1988 32 1 3.0995 -3.8809 -1.1019 33 1 2.3359 -9.9607 1.0041 34 1 3.9246 -9.8104 0.2157 35 1 3.7572 -9.4641 1.9537 36 1 2.2389 -1.9667 2.0680 37 1 0.6324 -2.0815 1.2864 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000972113092.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:52:31 Heat of formation + Delta-G solvation = 122.484318 kcal Electronic energy + Delta-G solvation = -21913.091241 eV Core-core repulsion = 18536.799237 eV Total energy + Delta-G solvation = -3376.292005 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.139 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -45.56662 -41.18470 -39.10526 -36.78520 -36.23932 -34.37116 -33.80710 -31.86395 -30.25827 -29.28128 -28.09930 -26.81435 -25.04116 -23.95418 -23.83386 -21.33421 -20.99756 -19.06570 -18.97575 -18.75025 -17.84307 -17.81491 -17.10725 -16.80366 -15.81394 -15.31954 -15.27943 -14.79987 -14.64463 -14.44731 -14.33671 -14.28187 -14.05170 -13.85715 -13.47137 -13.21662 -13.03959 -12.58203 -12.43526 -12.35695 -12.26506 -12.19029 -12.01361 -11.64085 -11.57864 -11.48699 -11.35968 -10.60132 -9.87791 -8.89727 -8.18911 -5.51106 -0.21011 0.23787 0.76370 1.35411 1.47226 1.55141 1.58542 1.81352 2.45404 2.62563 2.98933 3.02826 3.30168 3.71699 3.80982 3.98075 4.05280 4.16790 4.24012 4.32278 4.35942 4.50295 4.54333 4.61056 4.69443 4.76194 4.89063 4.95713 4.96820 5.02424 5.06163 5.24935 5.33797 5.89654 6.15919 6.16357 6.63168 6.93286 7.00964 7.61675 7.99915 9.00870 Molecular weight = 280.14amu Principal moments of inertia in cm(-1) A = 0.043527 B = 0.003748 C = 0.003592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 643.123749 B = 7468.381609 C = 7792.298163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.104 3.896 2 N -0.606 5.606 3 C -0.263 4.263 4 H 0.047 0.953 5 C -0.023 4.023 6 N -0.947 5.947 7 Si 0.949 3.051 8 H -0.276 1.276 9 H -0.314 1.314 10 H -0.250 1.250 11 C 0.167 3.833 12 H 0.078 0.922 13 C -0.147 4.147 14 C 0.117 3.883 15 N -0.590 5.590 16 C 0.625 3.375 17 O -0.551 6.551 18 C 0.122 3.878 19 N -0.259 5.259 20 N -0.060 5.060 21 N -0.114 5.114 22 C 0.072 3.928 23 N -0.263 5.263 24 C 0.102 3.898 25 H 0.024 0.976 26 H 0.026 0.974 27 H 0.073 0.927 28 H 0.263 0.737 29 H 0.079 0.921 30 H 0.091 0.909 31 H 0.089 0.911 32 H 0.086 0.914 33 H 0.131 0.869 34 H 0.144 0.856 35 H 0.130 0.870 36 H 0.067 0.933 37 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.351 -28.035 -2.449 28.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 N -0.328 5.328 3 C -0.393 4.393 4 H 0.065 0.935 5 C -0.220 4.220 6 N -0.591 5.591 7 Si 0.778 3.222 8 H -0.204 1.204 9 H -0.243 1.243 10 H -0.174 1.174 11 C 0.059 3.941 12 H 0.097 0.903 13 C -0.186 4.186 14 C -0.005 4.005 15 N -0.322 5.322 16 C 0.408 3.592 17 O -0.427 6.427 18 C -0.162 4.162 19 N -0.133 5.133 20 N -0.053 5.053 21 N -0.030 5.030 22 C -0.064 4.064 23 N -0.118 5.118 24 C -0.022 4.022 25 H 0.042 0.958 26 H 0.044 0.956 27 H 0.092 0.908 28 H 0.072 0.928 29 H 0.098 0.902 30 H 0.109 0.891 31 H 0.107 0.893 32 H 0.104 0.896 33 H 0.149 0.851 34 H 0.162 0.838 35 H 0.149 0.851 36 H 0.085 0.915 37 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 0.417 -28.337 -2.222 28.427 hybrid contribution -0.458 0.905 -0.017 1.015 sum -0.042 -27.432 -2.240 27.523 Atomic orbital electron populations 1.21444 0.83339 1.00021 0.99168 1.43990 1.01459 1.01196 1.86189 1.18696 1.04475 0.87079 1.29034 0.93514 1.25940 1.01120 0.94477 1.00438 1.70045 1.48663 0.98546 1.41822 0.85825 0.78544 0.77568 0.80217 1.20381 1.24281 1.17411 1.21600 0.96160 0.84113 0.92276 0.90333 1.23212 1.03349 0.92765 0.99312 1.22328 1.03617 0.97674 0.76908 1.48248 1.66856 1.07960 1.09166 1.15831 0.78028 0.80625 0.84714 1.90827 1.53179 1.84218 1.14427 1.24818 1.07513 0.95431 0.88401 1.76211 1.15882 1.05016 1.16184 1.78865 1.15588 1.03090 1.07792 1.50830 1.38529 1.12911 1.00702 1.23277 1.07174 0.68304 1.07640 1.75060 1.17685 0.97495 1.21602 1.22759 1.01167 0.79138 0.99119 0.95802 0.95644 0.90812 0.92776 0.90231 0.89093 0.89306 0.89596 0.85126 0.83787 0.85125 0.91491 0.90422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 4.17 8.33 127.77 1.06 5.24 16 2 N -0.61 -27.14 2.61 -695.03 -1.82 -28.95 16 3 C -0.26 -14.56 9.89 84.03 0.83 -13.73 16 4 H 0.05 2.86 8.06 -2.91 -0.02 2.83 16 5 C -0.02 -1.33 5.29 84.86 0.45 -0.88 16 6 N -0.95 -58.64 13.97 21.65 0.30 -58.34 16 7 Si 0.95 44.76 25.06 68.60 1.72 46.48 16 8 H -0.28 -12.45 6.62 99.48 0.66 -11.79 16 9 H -0.31 -15.19 7.11 99.48 0.71 -14.48 16 10 H -0.25 -10.87 7.11 99.48 0.71 -10.17 16 11 C 0.17 6.09 3.53 46.38 0.16 6.25 16 12 H 0.08 3.03 7.96 -2.39 -0.02 3.01 16 13 C -0.15 -4.25 6.48 31.78 0.21 -4.04 16 14 C 0.12 2.99 5.56 86.64 0.48 3.47 16 15 N -0.59 -18.13 3.34 -813.82 -2.72 -20.85 16 16 C 0.62 20.65 7.87 86.83 0.68 21.34 16 17 O -0.55 -21.68 17.35 -3.84 -0.07 -21.75 16 18 C 0.12 3.46 7.97 137.15 1.09 4.55 16 19 N -0.26 -6.58 10.09 -52.37 -0.53 -7.11 16 20 N -0.06 -1.25 13.23 37.02 0.49 -0.76 16 21 N -0.11 -1.94 4.39 -206.58 -0.91 -2.84 16 22 C 0.07 0.18 11.62 127.77 1.49 1.67 16 23 N -0.26 -6.55 12.17 -52.32 -0.64 -7.18 16 24 C 0.10 3.47 6.46 86.85 0.56 4.03 16 25 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 26 H 0.03 1.11 2.56 -2.38 -0.01 1.10 16 27 H 0.07 2.41 6.37 -2.39 -0.02 2.39 16 28 H 0.26 15.44 8.31 -92.70 -0.77 14.67 16 29 H 0.08 2.26 6.46 -2.39 -0.02 2.25 16 30 H 0.09 2.53 8.14 -2.39 -0.02 2.51 16 31 H 0.09 2.06 7.77 -2.39 -0.02 2.04 16 32 H 0.09 2.08 7.67 -2.39 -0.02 2.06 16 33 H 0.13 -0.22 8.14 -2.39 -0.02 -0.24 16 34 H 0.14 -0.39 8.14 -2.39 -0.02 -0.41 16 35 H 0.13 -0.02 8.14 -2.38 -0.02 -0.04 16 36 H 0.07 2.47 8.04 -2.39 -0.02 2.45 16 37 H 0.08 2.60 6.95 -2.39 -0.02 2.58 16 Total: -1.00 -75.63 306.93 3.91 -71.72 By element: Atomic # 1 Polarization: 0.64 SS G_CDS: 1.05 Total: 1.69 kcal Atomic # 6 Polarization: 20.88 SS G_CDS: 7.02 Total: 27.90 kcal Atomic # 7 Polarization: -120.22 SS G_CDS: -5.81 Total: -126.04 kcal Atomic # 8 Polarization: -21.68 SS G_CDS: -0.07 Total: -21.75 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 1.72 Total: 46.48 kcal Total: -75.63 3.91 -71.72 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972113092.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 194.201 kcal (2) G-P(sol) polarization free energy of solvation -75.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 118.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.716 kcal (6) G-S(sol) free energy of system = (1) + (5) 122.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds