Wall clock time and date at job start Tue Mar 31 2020 02:52:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36931 * 119.99817 * 2 1 4 4 H 1.07998 * 120.00261 * 161.07782 * 3 2 1 5 5 C 1.38815 * 120.00101 * 340.79778 * 3 2 1 6 6 N 1.31615 * 119.99945 * 346.78670 * 5 3 2 7 7 Si 1.86801 * 119.99888 * 166.79054 * 5 3 2 8 8 H 1.48497 * 109.47121 * 359.97438 * 7 5 3 9 9 H 1.48505 * 109.47084 * 120.00288 * 7 5 3 10 10 H 1.48503 * 109.47096 * 239.99788 * 7 5 3 11 11 C 1.46499 * 120.00154 * 179.97438 * 2 1 3 12 12 H 1.09002 * 110.64104 * 181.68838 * 11 2 1 13 13 C 1.55148 * 110.72077 * 305.02794 * 11 2 1 14 14 C 1.54913 * 101.58284 * 153.86273 * 13 11 2 15 15 N 1.47419 * 104.83111 * 322.98799 * 14 13 11 16 16 C 1.34775 * 125.64820 * 204.15985 * 15 14 13 17 17 O 1.21541 * 120.00258 * 179.97438 * 16 15 14 18 18 C 1.48000 * 120.00211 * 359.96289 * 16 15 14 19 19 N 1.34191 * 126.69741 * 0.02562 * 18 16 15 20 20 N 1.28983 * 107.25276 * 179.97438 * 19 18 16 21 21 N 1.28720 * 108.99039 * 359.97438 * 20 19 18 22 22 C 1.46496 * 125.32135 * 179.97438 * 21 20 19 23 23 N 1.28870 * 109.35657 * 359.76617 * 21 20 19 24 24 C 1.47024 * 108.70435 * 24.12833 * 15 14 13 25 25 H 1.09004 * 109.47268 * 84.81702 * 1 2 3 26 26 H 1.08997 * 109.46963 * 204.81074 * 1 2 3 27 27 H 1.09000 * 109.47184 * 324.81985 * 1 2 3 28 28 H 0.96996 * 120.00040 * 179.97438 * 6 5 3 29 29 H 1.09001 * 111.00446 * 271.93921 * 13 11 2 30 30 H 1.09005 * 111.01065 * 35.79060 * 13 11 2 31 31 H 1.09002 * 110.36334 * 204.14977 * 14 13 11 32 32 H 1.08996 * 110.45620 * 81.87737 * 14 13 11 33 33 H 1.09007 * 109.46999 * 90.02662 * 22 21 20 34 34 H 1.09000 * 109.47337 * 210.02484 * 22 21 20 35 35 H 1.09000 * 109.47239 * 330.02887 * 22 21 20 36 36 H 1.08995 * 109.88250 * 239.51817 * 24 15 14 37 37 H 1.09002 * 109.88094 * 118.35618 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1858 1.2112 0.3033 5 6 1.5135 2.3546 -0.3954 6 7 0.3519 2.2955 -1.0114 7 14 2.3061 4.0111 -0.0533 8 1 3.5997 3.8058 0.6464 9 1 2.5437 4.7206 -1.3361 10 1 1.4047 4.8240 0.8022 11 6 2.1975 -1.2687 0.0006 12 1 3.2727 -1.0916 0.0305 13 6 1.7507 -2.1600 1.1893 14 6 2.0638 -3.5780 0.6497 15 7 1.7324 -3.5173 -0.7855 16 6 1.4044 -4.5696 -1.5611 17 8 1.1486 -4.4013 -2.7373 18 6 1.3559 -5.9301 -0.9806 19 7 1.6112 -6.2683 0.2926 20 7 1.4585 -7.5456 0.3871 21 7 1.1211 -8.0134 -0.7636 22 6 0.8578 -9.4236 -1.0605 23 7 1.0470 -7.0468 -1.6126 24 6 1.8182 -2.1186 -1.2305 25 1 -0.3634 0.0928 -1.0235 26 1 -0.3633 -0.9328 0.4312 27 1 -0.3633 0.8400 0.5921 28 1 -0.0929 3.1122 -1.2873 29 1 2.3372 -1.9434 2.0821 30 1 0.6849 -2.0435 1.3861 31 1 1.4430 -4.3203 1.1513 32 1 3.1194 -3.8128 0.7857 33 1 -0.1988 -9.6377 -0.8991 34 1 1.1159 -9.6306 -2.0991 35 1 1.4602 -10.0517 -0.4043 36 1 0.8541 -1.7944 -1.6221 37 1 2.5848 -2.0206 -1.9991 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972113093.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:52:37 Heat of formation + Delta-G solvation = 144.336623 kcal Electronic energy + Delta-G solvation = -21901.913508 eV Core-core repulsion = 18526.569090 eV Total energy + Delta-G solvation = -3375.344418 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.139 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -44.57750 -39.71651 -37.46474 -35.49626 -34.77862 -33.33273 -31.70911 -29.82982 -29.27165 -27.82878 -26.06256 -25.44161 -23.51100 -22.92234 -22.30146 -20.13194 -19.19475 -17.91878 -17.83069 -17.03665 -16.73469 -15.98180 -15.54629 -14.85859 -14.28325 -14.23417 -13.80484 -13.71811 -13.36855 -13.31030 -12.69287 -12.50657 -12.41470 -12.16614 -11.82808 -11.57281 -11.29771 -11.12524 -10.90858 -10.79274 -10.57281 -10.52780 -10.41524 -10.22025 -10.15549 -9.83871 -9.77396 -8.56679 -8.38950 -6.85368 -5.74763 -3.19500 0.81689 1.35619 1.53041 2.78676 3.16308 3.38022 3.45186 3.47250 3.86935 3.89655 4.42019 4.47394 4.57802 4.72352 5.00447 5.08626 5.28982 5.33127 5.44646 5.60287 5.68130 5.74149 5.89451 5.95556 6.10960 6.35239 6.40919 6.51436 6.62835 6.83381 6.88501 7.39745 7.59424 7.72145 7.81204 7.90898 8.17933 8.34325 9.19645 9.82303 10.29527 11.29750 Molecular weight = 280.14amu Principal moments of inertia in cm(-1) A = 0.048701 B = 0.003534 C = 0.003430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 574.796838 B = 7920.840635 C = 8162.425846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.160 3.840 2 N -0.586 5.586 3 C -0.259 4.259 4 H 0.073 0.927 5 C 0.002 3.998 6 N -0.906 5.906 7 Si 0.907 3.093 8 H -0.278 1.278 9 H -0.290 1.290 10 H -0.289 1.289 11 C 0.173 3.827 12 H 0.081 0.919 13 C -0.153 4.153 14 C 0.098 3.902 15 N -0.588 5.588 16 C 0.619 3.381 17 O -0.515 6.515 18 C 0.143 3.857 19 N -0.250 5.250 20 N -0.061 5.061 21 N -0.138 5.138 22 C 0.093 3.907 23 N -0.251 5.251 24 C 0.088 3.912 25 H 0.030 0.970 26 H 0.002 0.998 27 H 0.049 0.951 28 H 0.253 0.747 29 H 0.080 0.920 30 H 0.078 0.922 31 H 0.088 0.912 32 H 0.070 0.930 33 H 0.105 0.895 34 H 0.113 0.887 35 H 0.115 0.885 36 H 0.078 0.922 37 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.623 -21.712 3.354 22.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.306 5.306 3 C -0.388 4.388 4 H 0.091 0.909 5 C -0.197 4.197 6 N -0.550 5.550 7 Si 0.737 3.263 8 H -0.203 1.203 9 H -0.217 1.217 10 H -0.216 1.216 11 C 0.062 3.938 12 H 0.100 0.900 13 C -0.193 4.193 14 C -0.025 4.025 15 N -0.321 5.321 16 C 0.400 3.600 17 O -0.388 6.388 18 C -0.141 4.141 19 N -0.125 5.125 20 N -0.055 5.055 21 N -0.051 5.051 22 C -0.047 4.047 23 N -0.105 5.105 24 C -0.036 4.036 25 H 0.048 0.952 26 H 0.020 0.980 27 H 0.067 0.933 28 H 0.063 0.937 29 H 0.099 0.901 30 H 0.096 0.904 31 H 0.106 0.894 32 H 0.088 0.912 33 H 0.123 0.877 34 H 0.132 0.868 35 H 0.134 0.866 36 H 0.097 0.903 37 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 1.372 -21.963 3.024 22.212 hybrid contribution 0.224 1.018 -0.306 1.086 sum 1.596 -20.945 2.718 21.181 Atomic orbital electron populations 1.20841 0.82210 0.95756 0.99623 1.43984 1.02052 0.99885 1.84727 1.19311 0.96410 0.84532 1.38537 0.90888 1.24999 0.97559 0.98489 0.98607 1.70110 1.16845 1.26654 1.41425 0.86142 0.78566 0.84044 0.77507 1.20276 1.21749 1.21623 1.21379 0.96560 0.85816 0.90036 0.90038 1.23381 1.02911 0.93056 0.99961 1.22606 1.00990 0.99285 0.79611 1.48264 1.65178 1.07289 1.11393 1.15736 0.79302 0.79929 0.84986 1.90854 1.49430 1.83661 1.14847 1.25394 1.04018 0.96073 0.88657 1.76242 1.17200 1.02384 1.16632 1.78928 1.14030 1.04853 1.07693 1.50242 1.40416 1.10551 1.03871 1.22523 1.05116 0.71312 1.05706 1.75103 1.19104 0.95680 1.20652 1.23126 1.02893 0.77241 1.00306 0.95199 0.97997 0.93270 0.93689 0.90106 0.90381 0.89363 0.91172 0.87705 0.86829 0.86641 0.90333 0.91519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.88 7.72 59.85 0.46 4.34 16 2 N -0.59 -14.17 2.94 -171.39 -0.50 -14.67 16 3 C -0.26 -6.88 9.66 -15.06 -0.15 -7.02 16 4 H 0.07 1.88 7.81 -52.49 -0.41 1.47 16 5 C 0.00 0.05 5.11 -17.43 -0.09 -0.04 16 6 N -0.91 -26.08 10.50 55.49 0.58 -25.50 16 7 Si 0.91 21.53 29.57 -169.99 -5.03 16.50 16 8 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 9 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 10 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 11 C 0.17 3.38 3.45 -66.10 -0.23 3.15 16 12 H 0.08 1.55 7.91 -51.93 -0.41 1.14 16 13 C -0.15 -2.47 6.59 -24.59 -0.16 -2.63 16 14 C 0.10 1.44 6.16 -2.53 -0.02 1.42 16 15 N -0.59 -10.20 3.33 -171.57 -0.57 -10.77 16 16 C 0.62 11.27 7.86 -12.26 -0.10 11.17 16 17 O -0.52 -10.92 17.43 5.33 0.09 -10.83 16 18 C 0.14 2.26 7.95 -156.24 -1.24 1.02 16 19 N -0.25 -3.60 9.68 32.10 0.31 -3.29 16 20 N -0.06 -0.75 13.23 60.35 0.80 0.05 16 21 N -0.14 -1.44 4.39 -16.65 -0.07 -1.51 16 22 C 0.09 0.33 11.62 59.84 0.70 1.03 16 23 N -0.25 -3.56 12.17 32.11 0.39 -3.17 16 24 C 0.09 1.71 6.50 -3.06 -0.02 1.69 16 25 H 0.03 0.79 7.36 -51.93 -0.38 0.41 16 26 H 0.00 0.03 6.13 -51.93 -0.32 -0.28 16 27 H 0.05 1.29 7.08 -51.93 -0.37 0.92 16 28 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 29 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 30 H 0.08 1.34 6.14 -51.93 -0.32 1.02 16 31 H 0.09 1.25 6.19 -51.93 -0.32 0.93 16 32 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.10 0.18 8.14 -51.93 -0.42 -0.24 16 34 H 0.11 0.24 8.14 -51.93 -0.42 -0.18 16 35 H 0.12 0.13 8.14 -51.93 -0.42 -0.29 16 36 H 0.08 1.72 7.06 -51.93 -0.37 1.35 16 37 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 LS Contribution 310.03 15.07 4.67 4.67 Total: -1.00 -33.63 310.03 -4.74 -38.36 By element: Atomic # 1 Polarization: 0.59 SS G_CDS: -4.57 Total: -3.97 kcal Atomic # 6 Polarization: 14.97 SS G_CDS: -0.84 Total: 14.13 kcal Atomic # 7 Polarization: -59.80 SS G_CDS: 0.93 Total: -58.86 kcal Atomic # 8 Polarization: -10.92 SS G_CDS: 0.09 Total: -10.83 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.03 Total: 16.50 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -33.63 -4.74 -38.36 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972113093.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 182.698 kcal (2) G-P(sol) polarization free energy of solvation -33.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 149.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.361 kcal (6) G-S(sol) free energy of system = (1) + (5) 144.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds