Wall clock time and date at job start Tue Mar 31 2020 02:13:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.98900 * 2 1 4 4 C 1.54317 * 109.88357 * 121.09478 * 2 1 3 5 5 H 1.09001 * 110.87160 * 260.04872 * 4 2 1 6 6 N 1.46498 * 110.72217 * 23.25196 * 4 2 1 7 7 C 1.36943 * 119.99993 * 264.41437 * 6 4 2 8 8 H 1.08003 * 120.00021 * 359.71954 * 7 6 4 9 9 C 1.38815 * 119.99876 * 179.72432 * 7 6 4 10 10 N 1.31614 * 120.00320 * 359.97438 * 9 7 6 11 11 Si 1.86799 * 119.99462 * 179.97438 * 9 7 6 12 12 H 1.48507 * 109.47100 * 89.99955 * 11 9 7 13 13 H 1.48500 * 109.46787 * 209.99450 * 11 9 7 14 14 H 1.48495 * 109.47435 * 329.99859 * 11 9 7 15 15 C 1.55158 * 102.94154 * 141.61581 * 4 2 1 16 16 C 1.54912 * 101.58071 * 324.49572 * 15 4 2 17 17 N 1.47015 * 109.88300 * 238.90868 * 2 1 3 18 18 C 1.34779 * 125.65457 * 61.60290 * 17 2 1 19 19 O 1.21286 * 119.99769 * 0.02562 * 18 17 2 20 20 C 1.50699 * 120.00496 * 180.02562 * 18 17 2 21 21 N 1.46497 * 109.47154 * 179.97438 * 20 18 17 22 22 C 1.34599 * 126.43596 * 125.00119 * 21 20 18 23 23 N 1.31071 * 106.68142 * 180.02562 * 22 21 20 24 24 N 1.28843 * 107.98818 * 359.97438 * 23 22 21 25 25 N 1.28737 * 109.39616 * 359.73153 * 24 23 22 26 26 H 1.08994 * 109.47076 * 293.63664 * 1 2 3 27 27 H 1.08997 * 109.47172 * 53.63979 * 1 2 3 28 28 H 1.09005 * 109.46600 * 173.63480 * 1 2 3 29 29 H 0.97001 * 120.00558 * 84.12849 * 6 4 2 30 30 H 0.96996 * 119.99989 * 180.02562 * 10 9 7 31 31 H 1.08993 * 111.00393 * 82.57163 * 15 4 2 32 32 H 1.09003 * 110.99988 * 206.38729 * 15 4 2 33 33 H 1.08993 * 110.36615 * 155.84743 * 16 15 4 34 34 H 1.08995 * 110.36712 * 278.17558 * 16 15 4 35 35 H 1.08999 * 109.47035 * 300.00343 * 20 18 17 36 36 H 1.09004 * 109.46573 * 59.99917 * 20 18 17 37 37 H 1.08005 * 126.65911 * 359.96803 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9026 1.0244 0.0000 4 6 2.0549 -0.7495 1.2427 5 1 2.3525 -0.0481 2.0222 6 7 1.0473 -1.6855 1.7474 7 6 0.2102 -1.3083 2.7634 8 1 0.2958 -0.3223 3.1957 9 6 -0.7483 -2.1933 3.2377 10 7 -0.8529 -3.3948 2.7107 11 14 -1.8896 -1.6789 4.6241 12 1 -3.1092 -1.0515 4.0544 13 1 -2.2727 -2.8734 5.4189 14 1 -1.1945 -0.7028 5.5012 15 6 3.2877 -1.5141 0.6923 16 6 2.8146 -1.8793 -0.7368 17 7 2.0300 -0.7139 -1.1839 18 6 1.8074 -0.3619 -2.4657 19 8 1.1436 0.6212 -2.7181 20 6 2.3833 -1.1899 -3.5855 21 7 2.0012 -0.6038 -4.8726 22 6 2.8356 -0.2356 -5.8625 23 7 2.0873 0.2386 -6.8284 24 7 0.8574 0.1650 -6.4517 25 7 0.8014 -0.3491 -5.2727 26 1 -0.3633 0.4120 0.9414 27 1 -0.3633 0.6092 -0.8276 28 1 -0.3633 -1.0214 -0.1139 29 1 0.9703 -2.5711 1.3591 30 1 -1.5229 -4.0130 3.0419 31 1 4.1654 -0.8686 0.6604 32 1 3.4857 -2.4105 1.2800 33 1 3.6717 -2.0336 -1.3923 34 1 2.1888 -2.7713 -0.7129 35 1 3.4700 -1.2079 -3.5022 36 1 1.9971 -2.2072 -3.5208 37 1 3.9128 -0.3146 -5.8608 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000985947118.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:13:36 Heat of formation + Delta-G solvation = 115.409818 kcal Electronic energy + Delta-G solvation = -22164.822969 eV Core-core repulsion = 18788.224190 eV Total energy + Delta-G solvation = -3376.598778 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.139 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -44.24269 -40.20246 -37.84842 -35.47572 -34.19908 -32.54393 -31.81745 -30.94151 -29.76314 -28.28261 -25.42099 -23.95921 -23.85497 -23.41961 -22.39641 -20.25075 -18.91629 -17.94555 -17.64035 -17.37311 -16.51580 -16.17418 -15.93417 -15.25922 -14.63850 -14.32682 -13.73190 -13.67412 -13.54963 -13.00392 -12.89417 -12.70137 -12.53157 -12.20452 -11.68292 -11.48701 -11.24946 -11.21396 -11.01229 -10.94300 -10.74997 -10.65565 -10.47865 -10.31331 -10.15551 -9.84594 -9.72169 -9.06538 -8.53465 -7.15867 -5.91930 -3.21893 1.14407 1.69346 2.19841 2.42405 2.93676 3.35973 3.41816 3.43190 3.91620 4.04464 4.16498 4.46584 4.50945 4.66539 4.74064 5.05833 5.17862 5.29507 5.39310 5.52517 5.55541 5.58589 5.66114 5.90354 5.92095 6.05788 6.10049 6.27842 6.37314 6.51924 6.71083 6.87532 7.23577 7.54639 7.57092 8.04583 8.25204 8.53871 9.37847 9.89617 10.24422 11.29932 Molecular weight = 280.14amu Principal moments of inertia in cm(-1) A = 0.031194 B = 0.003959 C = 0.003759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.386202 B = 7071.465809 C = 7447.309808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.110 3.890 3 H 0.062 0.938 4 C 0.171 3.829 5 H 0.077 0.923 6 N -0.708 5.708 7 C -0.245 4.245 8 H 0.072 0.928 9 C -0.006 4.006 10 N -0.929 5.929 11 Si 0.905 3.095 12 H -0.289 1.289 13 H -0.291 1.291 14 H -0.281 1.281 15 C -0.145 4.145 16 C 0.095 3.905 17 N -0.598 5.598 18 C 0.512 3.488 19 O -0.516 6.516 20 C 0.097 3.903 21 N -0.297 5.297 22 C 0.155 3.845 23 N -0.310 5.310 24 N -0.083 5.083 25 N -0.057 5.057 26 H 0.071 0.929 27 H 0.039 0.961 28 H 0.065 0.935 29 H 0.385 0.615 30 H 0.257 0.743 31 H 0.073 0.927 32 H 0.089 0.911 33 H 0.068 0.932 34 H 0.076 0.924 35 H 0.140 0.860 36 H 0.134 0.866 37 H 0.234 0.766 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.986 0.931 -9.580 16.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.005 3.995 3 H 0.080 0.920 4 C 0.058 3.942 5 H 0.095 0.905 6 N -0.347 5.347 7 C -0.375 4.375 8 H 0.090 0.910 9 C -0.203 4.203 10 N -0.576 5.576 11 Si 0.736 3.264 12 H -0.216 1.216 13 H -0.218 1.218 14 H -0.207 1.207 15 C -0.184 4.184 16 C -0.028 4.028 17 N -0.332 5.332 18 C 0.296 3.704 19 O -0.392 6.392 20 C -0.028 4.028 21 N -0.099 5.099 22 C -0.143 4.143 23 N -0.157 5.157 24 N -0.077 5.077 25 N -0.044 5.044 26 H 0.090 0.910 27 H 0.058 0.942 28 H 0.084 0.916 29 H 0.219 0.781 30 H 0.066 0.934 31 H 0.091 0.909 32 H 0.108 0.892 33 H 0.086 0.914 34 H 0.095 0.905 35 H 0.157 0.843 36 H 0.152 0.848 37 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges 12.265 1.894 -10.221 16.078 hybrid contribution 0.241 -0.489 1.206 1.323 sum 12.506 1.405 -9.015 15.481 Atomic orbital electron populations 1.21775 0.93385 1.02755 1.01260 1.22876 0.96472 0.95426 0.84759 0.92003 1.21254 0.88476 0.92291 0.92193 0.90476 1.42328 1.37520 1.13969 1.40861 1.19179 1.10172 0.98618 1.09572 0.90998 1.24720 0.99568 0.96085 0.99881 1.69636 1.37145 1.06385 1.44468 0.86229 0.81105 0.77285 0.81785 1.21584 1.21756 1.20672 1.23152 0.98678 1.02026 0.94528 1.22444 0.94461 0.89146 0.96713 1.48587 1.51562 1.28533 1.04519 1.19618 0.82134 0.85920 0.82710 1.90827 1.38710 1.27001 1.82617 1.22063 1.03459 0.99083 0.78236 1.48192 1.05164 1.41480 1.15046 1.27689 1.01368 1.00125 0.85140 1.74959 0.97935 1.18501 1.24324 1.78675 1.11843 1.13979 1.03190 1.79072 1.03469 1.13462 1.08391 0.91037 0.94181 0.91614 0.78080 0.93353 0.90878 0.89216 0.91388 0.90537 0.84267 0.84805 0.74992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.63 8.02 37.16 0.30 -2.33 16 2 C 0.11 1.79 3.44 -66.96 -0.23 1.56 16 3 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 4 C 0.17 2.79 3.52 -66.10 -0.23 2.56 16 5 H 0.08 1.27 8.06 -51.93 -0.42 0.86 16 6 N -0.71 -15.06 3.91 -51.65 -0.20 -15.26 16 7 C -0.24 -6.04 8.40 -15.06 -0.13 -6.17 16 8 H 0.07 1.75 7.83 -52.48 -0.41 1.33 16 9 C -0.01 -0.15 5.50 -17.43 -0.10 -0.25 16 10 N -0.93 -25.97 13.06 55.49 0.72 -25.24 16 11 Si 0.91 21.20 29.55 -169.99 -5.02 16.17 16 12 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 13 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 14 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 15 C -0.14 -1.71 6.69 -24.58 -0.16 -1.87 16 16 C 0.10 0.98 6.62 -2.53 -0.02 0.97 16 17 N -0.60 -8.01 3.07 -163.02 -0.50 -8.51 16 18 C 0.51 7.02 7.66 -10.99 -0.08 6.94 16 19 O -0.52 -9.63 14.85 5.55 0.08 -9.55 16 20 C 0.10 0.81 5.97 -5.20 -0.03 0.78 16 21 N -0.30 -3.43 3.19 -63.74 -0.20 -3.63 16 22 C 0.16 1.47 12.79 -90.39 -1.16 0.32 16 23 N -0.31 -4.29 12.36 29.59 0.37 -3.93 16 24 N -0.08 -1.37 13.43 60.35 0.81 -0.56 16 25 N -0.06 -0.92 12.30 60.35 0.74 -0.18 16 26 H 0.07 1.49 7.11 -51.93 -0.37 1.12 16 27 H 0.04 0.81 7.08 -51.93 -0.37 0.44 16 28 H 0.06 1.45 7.64 -51.93 -0.40 1.05 16 29 H 0.39 8.79 7.84 -40.82 -0.32 8.47 16 30 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 31 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 33 H 0.07 0.41 7.48 -51.93 -0.39 0.03 16 34 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.14 0.44 7.78 -51.93 -0.40 0.03 16 36 H 0.13 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.23 0.73 8.06 -52.48 -0.42 0.30 16 LS Contribution 313.55 15.07 4.73 4.73 Total: -1.00 -34.62 313.55 -5.06 -39.68 By element: Atomic # 1 Polarization: 8.54 SS G_CDS: -4.75 Total: 3.79 kcal Atomic # 6 Polarization: 4.34 SS G_CDS: -1.84 Total: 2.50 kcal Atomic # 7 Polarization: -59.06 SS G_CDS: 1.74 Total: -57.32 kcal Atomic # 8 Polarization: -9.63 SS G_CDS: 0.08 Total: -9.55 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -34.62 -5.06 -39.68 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000985947118.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.091 kcal (2) G-P(sol) polarization free energy of solvation -34.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 120.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.681 kcal (6) G-S(sol) free energy of system = (1) + (5) 115.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds