Wall clock time and date at job start Tue Mar 31 2020 02:13:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 109.87477 * 2 1 4 4 C 1.54318 * 109.88589 * 238.98305 * 2 1 3 5 5 H 1.09002 * 110.72444 * 144.41096 * 4 2 1 6 6 N 1.46504 * 110.71992 * 21.14280 * 4 2 1 7 7 C 1.36935 * 120.00499 * 155.00094 * 6 4 2 8 8 H 1.08004 * 119.99410 * 359.97438 * 7 6 4 9 9 C 1.38809 * 120.00015 * 180.02562 * 7 6 4 10 10 N 1.31618 * 120.00384 * 359.97438 * 9 7 6 11 11 Si 1.86798 * 119.99707 * 179.97438 * 9 7 6 12 12 H 1.48502 * 109.47464 * 59.99877 * 11 9 7 13 13 H 1.48504 * 109.47090 * 179.97438 * 11 9 7 14 14 H 1.48495 * 109.47323 * 299.99694 * 11 9 7 15 15 C 1.55154 * 102.94706 * 262.77585 * 4 2 1 16 16 C 1.54907 * 101.58028 * 324.49859 * 15 4 2 17 17 N 1.47026 * 109.88309 * 121.17632 * 2 1 3 18 18 C 1.34780 * 125.64274 * 300.45579 * 17 2 1 19 19 O 1.21270 * 120.00380 * 0.02562 * 18 17 2 20 20 C 1.50708 * 119.99384 * 179.97438 * 18 17 2 21 21 N 1.46501 * 109.46802 * 180.02562 * 20 18 17 22 22 C 1.34595 * 126.43801 * 124.71564 * 21 20 18 23 23 N 1.31068 * 106.67846 * 179.87551 * 22 21 20 24 24 N 1.28833 * 107.99286 * 0.38449 * 23 22 21 25 25 N 1.28738 * 109.39927 * 359.75147 * 24 23 22 26 26 H 1.09002 * 109.47153 * 181.01454 * 1 2 3 27 27 H 1.09001 * 109.46832 * 61.01645 * 1 2 3 28 28 H 1.09004 * 109.47261 * 301.01627 * 1 2 3 29 29 H 0.97002 * 119.99396 * 334.99695 * 6 4 2 30 30 H 0.96998 * 120.00318 * 180.02562 * 10 9 7 31 31 H 1.09000 * 111.00258 * 82.56702 * 15 4 2 32 32 H 1.08998 * 111.00706 * 206.42119 * 15 4 2 33 33 H 1.09001 * 110.36979 * 155.84714 * 16 15 4 34 34 H 1.08999 * 110.36689 * 278.06189 * 16 15 4 35 35 H 1.08999 * 109.46840 * 300.00108 * 20 18 17 36 36 H 1.08993 * 109.46953 * 60.00231 * 20 18 17 37 37 H 1.08001 * 126.66228 * 0.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0549 -0.7478 -1.2437 5 1 2.9657 -0.2809 -1.6186 6 7 1.0294 -0.7994 -2.2886 7 6 1.3954 -0.9337 -3.6013 8 1 2.4403 -1.0012 -3.8663 9 6 0.4237 -0.9820 -4.5914 10 7 -0.8496 -0.8993 -4.2685 11 14 0.9232 -1.1646 -6.3820 12 1 1.6786 -2.4308 -6.5587 13 1 -0.2923 -1.1909 -7.2348 14 1 1.7802 -0.0178 -6.7763 15 6 2.3519 -2.1685 -0.6954 16 6 2.8568 -1.8508 0.7342 17 7 2.0300 -0.7157 1.1829 18 6 1.7750 -0.3880 2.4652 19 8 1.0780 0.5714 2.7188 20 6 2.3554 -1.2146 3.5838 21 7 1.9342 -0.6577 4.8717 22 6 1.2973 -1.3164 5.8576 23 7 1.1116 -0.4543 6.8272 24 7 1.6013 0.6771 6.4529 25 7 2.0992 0.5578 5.2717 26 1 -0.3633 -1.0275 0.0182 27 1 -0.3633 0.4980 -0.8990 28 1 -0.3634 0.5296 0.8808 29 1 0.0910 -0.7384 -2.0506 30 1 -1.5286 -0.9334 -4.9603 31 1 1.4452 -2.7727 -0.6642 32 1 3.1271 -2.6600 -1.2833 33 1 2.7088 -2.7100 1.3885 34 1 3.9096 -1.5695 0.7110 35 1 2.0000 -2.2416 3.4987 36 1 3.4433 -1.2001 3.5196 37 1 0.9994 -2.3545 5.8520 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000985947121.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:13:39 Heat of formation + Delta-G solvation = 92.176601 kcal Electronic energy + Delta-G solvation = -21894.840159 eV Core-core repulsion = 18517.233913 eV Total energy + Delta-G solvation = -3377.606246 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.139 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -45.15099 -41.39368 -39.08449 -36.41168 -35.97005 -33.64915 -33.37004 -32.12773 -31.18259 -29.47654 -26.78905 -25.56838 -24.84919 -24.54980 -23.58154 -21.27778 -20.11384 -19.46981 -18.77503 -18.51269 -17.53895 -17.11526 -16.95596 -16.51929 -16.26722 -15.80258 -15.54584 -14.75651 -14.67031 -14.31572 -13.87134 -13.63014 -13.59799 -13.25385 -13.14380 -13.02312 -12.92040 -12.83100 -12.53175 -12.20077 -12.14154 -12.09332 -12.03811 -11.60632 -11.52349 -11.43031 -10.91854 -10.88447 -9.74228 -9.00680 -7.93788 -5.22511 0.27863 0.97402 1.27155 1.41523 1.50120 1.52224 1.58076 1.86083 2.57927 3.10729 3.38931 3.46680 3.51669 3.76201 3.83626 3.91890 4.01248 4.03529 4.20468 4.37409 4.40341 4.45492 4.55592 4.64937 4.72789 4.81068 4.87602 5.04492 5.17402 5.22123 5.29860 5.32463 5.51389 5.56972 6.27903 6.44888 6.96733 7.35494 7.59415 8.10029 8.31909 9.29575 Molecular weight = 280.14amu Principal moments of inertia in cm(-1) A = 0.049781 B = 0.003371 C = 0.003275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 562.329069 B = 8303.394587 C = 8547.789755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.136 3.864 3 H 0.058 0.942 4 C 0.163 3.837 5 H 0.068 0.932 6 N -0.733 5.733 7 C -0.239 4.239 8 H 0.082 0.918 9 C -0.075 4.075 10 N -0.971 5.971 11 Si 0.971 3.029 12 H -0.274 1.274 13 H -0.302 1.302 14 H -0.281 1.281 15 C -0.146 4.146 16 C 0.098 3.902 17 N -0.600 5.600 18 C 0.507 3.493 19 O -0.573 6.573 20 C 0.103 3.897 21 N -0.299 5.299 22 C 0.185 3.815 23 N -0.347 5.347 24 N -0.120 5.120 25 N -0.097 5.097 26 H 0.054 0.946 27 H 0.052 0.948 28 H 0.049 0.951 29 H 0.380 0.620 30 H 0.250 0.750 31 H 0.059 0.941 32 H 0.089 0.911 33 H 0.124 0.876 34 H 0.101 0.899 35 H 0.203 0.797 36 H 0.172 0.828 37 H 0.296 0.704 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.942 -9.963 15.133 21.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.031 3.969 3 H 0.076 0.924 4 C 0.053 3.947 5 H 0.086 0.914 6 N -0.375 5.375 7 C -0.371 4.371 8 H 0.100 0.900 9 C -0.267 4.267 10 N -0.622 5.622 11 Si 0.800 3.200 12 H -0.200 1.200 13 H -0.229 1.229 14 H -0.207 1.207 15 C -0.187 4.187 16 C -0.023 4.023 17 N -0.333 5.333 18 C 0.295 3.705 19 O -0.452 6.452 20 C -0.020 4.020 21 N -0.101 5.101 22 C -0.113 4.113 23 N -0.195 5.195 24 N -0.114 5.114 25 N -0.085 5.085 26 H 0.073 0.927 27 H 0.070 0.930 28 H 0.068 0.932 29 H 0.215 0.785 30 H 0.059 0.941 31 H 0.078 0.922 32 H 0.108 0.892 33 H 0.142 0.858 34 H 0.119 0.881 35 H 0.219 0.781 36 H 0.190 0.810 37 H 0.311 0.689 Dipole moment (debyes) X Y Z Total from point charges 10.759 -8.173 15.793 20.784 hybrid contribution -0.793 -0.343 -1.891 2.079 sum 9.967 -8.516 13.903 19.108 Atomic orbital electron populations 1.21803 0.95989 1.01516 1.00871 1.21581 0.94063 0.95677 0.85609 0.92377 1.21428 0.91914 0.94841 0.86508 0.91398 1.42837 1.05112 1.87374 1.02190 1.19627 0.92861 1.40253 0.84327 0.89976 1.25529 0.95316 1.03870 1.02000 1.69805 0.99880 1.59336 1.33152 0.85248 0.76235 0.78269 0.80205 1.19979 1.22870 1.20681 1.23367 1.01715 0.98022 0.95596 1.22771 0.95399 0.88449 0.95690 1.48505 1.50116 1.31089 1.03622 1.20613 0.81192 0.85390 0.83324 1.90831 1.40294 1.30601 1.83442 1.22514 1.05551 0.99791 0.74164 1.48432 1.38448 1.06925 1.16296 1.28804 0.95150 1.04148 0.83180 1.74867 1.20499 0.97604 1.26497 1.78634 1.11653 1.17236 1.03892 1.78946 1.19275 1.01724 1.08519 0.92714 0.92958 0.93193 0.78450 0.94148 0.92180 0.89207 0.85841 0.88054 0.78058 0.81041 0.68872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.18 7.93 71.98 0.57 -4.61 16 2 C 0.14 4.22 3.48 45.34 0.16 4.38 16 3 H 0.06 1.99 8.14 -2.38 -0.02 1.97 16 4 C 0.16 5.39 3.48 46.18 0.16 5.55 16 5 H 0.07 2.23 8.09 -2.39 -0.02 2.22 16 6 N -0.73 -33.42 4.94 -317.33 -1.57 -34.98 16 7 C -0.24 -12.18 9.96 84.03 0.84 -11.34 16 8 H 0.08 3.92 7.83 -2.91 -0.02 3.89 16 9 C -0.07 -4.08 5.50 84.86 0.47 -3.61 16 10 N -0.97 -57.34 13.06 21.65 0.28 -57.06 16 11 Si 0.97 43.89 29.55 68.60 2.03 45.92 16 12 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 13 H -0.30 -14.09 7.11 99.48 0.71 -13.38 16 14 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 15 C -0.15 -3.42 6.77 31.98 0.22 -3.21 16 16 C 0.10 1.23 6.69 86.85 0.58 1.81 16 17 N -0.60 -12.73 3.08 -788.06 -2.43 -15.16 16 18 C 0.51 11.01 7.65 87.66 0.67 11.68 16 19 O -0.57 -19.65 14.60 -3.00 -0.04 -19.69 16 20 C 0.10 0.85 5.97 85.64 0.51 1.36 16 21 N -0.30 -5.17 3.19 -355.56 -1.14 -6.31 16 22 C 0.18 2.52 12.79 180.27 2.31 4.82 16 23 N -0.35 -8.64 12.36 -60.30 -0.75 -9.38 16 24 N -0.12 -3.73 13.43 37.01 0.50 -3.24 16 25 N -0.10 -2.77 12.29 37.02 0.45 -2.32 16 26 H 0.05 1.94 8.03 -2.39 -0.02 1.92 16 27 H 0.05 2.18 6.76 -2.39 -0.02 2.17 16 28 H 0.05 1.86 6.77 -2.38 -0.02 1.85 16 29 H 0.38 18.95 5.06 -92.71 -0.47 18.48 16 30 H 0.25 14.49 8.31 -92.71 -0.77 13.72 16 31 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 32 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 33 H 0.12 0.36 7.48 -2.39 -0.02 0.35 16 34 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 35 H 0.20 -0.77 7.78 -2.39 -0.02 -0.79 16 36 H 0.17 0.24 8.14 -2.39 -0.02 0.23 16 37 H 0.30 -0.36 8.06 -2.91 -0.02 -0.39 16 Total: -1.00 -85.88 312.93 4.45 -81.43 By element: Atomic # 1 Polarization: 13.32 SS G_CDS: 0.63 Total: 13.95 kcal Atomic # 6 Polarization: 0.36 SS G_CDS: 6.48 Total: 6.83 kcal Atomic # 7 Polarization: -123.80 SS G_CDS: -4.64 Total: -128.44 kcal Atomic # 8 Polarization: -19.65 SS G_CDS: -0.04 Total: -19.69 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.92 kcal Total: -85.88 4.45 -81.43 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000985947121.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 173.602 kcal (2) G-P(sol) polarization free energy of solvation -85.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.425 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds