Wall clock time and date at job start Tue Mar 31 2020 02:13:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09000 * 109.99845 * 2 1 4 4 C 1.54327 * 109.88212 * 238.89950 * 2 1 3 5 5 H 1.09002 * 110.71517 * 144.23445 * 4 2 1 6 6 N 1.46496 * 110.71777 * 21.13953 * 4 2 1 7 7 C 1.36945 * 119.99718 * 157.44137 * 6 4 2 8 8 H 1.07997 * 119.99756 * 359.97438 * 7 6 4 9 9 C 1.38805 * 119.99878 * 179.97438 * 7 6 4 10 10 N 1.31624 * 120.00257 * 0.02562 * 9 7 6 11 11 Si 1.86803 * 119.99929 * 179.97438 * 9 7 6 12 12 H 1.48498 * 109.47174 * 270.00277 * 11 9 7 13 13 H 1.48501 * 109.47062 * 30.00228 * 11 9 7 14 14 H 1.48499 * 109.46981 * 150.00382 * 11 9 7 15 15 C 1.55150 * 103.10110 * 262.68605 * 4 2 1 16 16 C 1.54914 * 101.58287 * 324.58850 * 15 4 2 17 17 N 1.47317 * 109.85122 * 121.29612 * 2 1 3 18 18 C 1.34780 * 125.61368 * 300.48931 * 17 2 1 19 19 O 1.21542 * 120.00319 * 0.16664 * 18 17 2 20 20 C 1.48003 * 120.00075 * 180.16161 * 18 17 2 21 21 N 1.34191 * 126.69505 * 359.69316 * 20 18 17 22 22 N 1.28991 * 107.24770 * 179.83280 * 21 20 18 23 23 N 1.28719 * 108.98592 * 0.43212 * 22 21 20 24 24 C 1.46507 * 125.31524 * 179.68878 * 23 22 21 25 25 N 1.28869 * 109.36357 * 359.72629 * 23 22 21 26 26 H 1.08997 * 109.47683 * 181.10140 * 1 2 3 27 27 H 1.09004 * 109.47517 * 301.10314 * 1 2 3 28 28 H 1.09003 * 109.47545 * 61.09860 * 1 2 3 29 29 H 0.96996 * 120.00499 * 337.43867 * 6 4 2 30 30 H 0.97001 * 119.99885 * 179.97438 * 10 9 7 31 31 H 1.09000 * 111.00827 * 82.66368 * 15 4 2 32 32 H 1.08999 * 111.00790 * 206.51538 * 15 4 2 33 33 H 1.08998 * 110.36748 * 155.85045 * 16 15 4 34 34 H 1.09005 * 110.36345 * 278.16933 * 16 15 4 35 35 H 1.08999 * 109.47182 * 270.03841 * 24 23 22 36 36 H 1.08995 * 109.47491 * 30.04441 * 24 23 22 37 37 H 1.08997 * 109.47047 * 150.04259 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0548 -0.7496 -1.2427 5 1 2.9639 -0.2814 -1.6200 6 7 1.0292 -0.8028 -2.2874 7 6 1.3924 -0.9892 -3.5946 8 1 2.4349 -1.0966 -3.8552 9 6 0.4207 -1.0400 -4.5844 10 7 -0.8499 -0.9086 -4.2668 11 14 0.9162 -1.2936 -6.3676 12 1 1.1475 0.0254 -7.0094 13 1 2.1633 -2.0977 -6.4252 14 1 -0.1684 -2.0101 -7.0856 15 6 2.3553 -2.1701 -0.6956 16 6 2.8596 -1.8524 0.7343 17 7 2.0302 -0.7198 1.1840 18 6 1.7738 -0.3945 2.4666 19 8 1.0726 0.5649 2.7218 20 6 2.3460 -1.2057 3.5644 21 7 3.1278 -2.2889 3.4375 22 7 3.4127 -2.6965 4.6277 23 7 2.8386 -1.9249 5.4832 24 6 2.9182 -2.0671 6.9392 25 7 2.1822 -1.0083 4.8589 26 1 -0.3634 -1.0274 0.0198 27 1 -0.3634 0.5309 0.8799 28 1 -0.3634 0.4967 -0.8997 29 1 0.0929 -0.7059 -2.0533 30 1 -1.5289 -0.9438 -4.9586 31 1 1.4501 -2.7766 -0.6649 32 1 3.1316 -2.6592 -1.2840 33 1 2.7138 -2.7125 1.3877 34 1 3.9113 -1.5668 0.7108 35 1 2.1068 -2.7066 7.2867 36 1 3.8747 -2.5148 7.2088 37 1 2.8322 -1.0856 7.4053 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000986659895.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:13:13 Heat of formation + Delta-G solvation = 132.094227 kcal Electronic energy + Delta-G solvation = -21972.008099 eV Core-core repulsion = 18596.132811 eV Total energy + Delta-G solvation = -3375.875288 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.139 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -44.59796 -39.96835 -37.53664 -35.51129 -34.16606 -33.36347 -31.72186 -30.69979 -29.51275 -28.57334 -25.43281 -25.18309 -23.63026 -23.01736 -22.49663 -20.33375 -18.96808 -17.95648 -17.83373 -17.45561 -16.73988 -15.83268 -15.59773 -14.65774 -14.33129 -14.30547 -13.93153 -13.77080 -13.61480 -13.34209 -12.90375 -12.54184 -12.36584 -12.06953 -11.77900 -11.59845 -11.31863 -11.29559 -11.07680 -10.96587 -10.76027 -10.59393 -10.41785 -10.23883 -10.05956 -9.92927 -9.63878 -8.93020 -8.48600 -7.01064 -5.80253 -3.10043 0.79395 1.33071 1.50782 2.72340 3.11934 3.42944 3.48302 3.49881 3.84275 3.86385 4.40576 4.55092 4.56762 4.71011 4.96984 5.12301 5.24355 5.33057 5.48880 5.61152 5.63151 5.71840 5.76504 5.88235 6.07793 6.19638 6.23705 6.37054 6.54965 6.62561 6.69355 6.82376 6.99981 7.55001 7.68319 7.88126 8.14251 8.38228 9.49959 10.04539 10.39613 11.42204 Molecular weight = 280.14amu Principal moments of inertia in cm(-1) A = 0.044445 B = 0.003623 C = 0.003446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 629.834071 B = 7725.908613 C = 8123.935861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.131 3.869 3 H 0.079 0.921 4 C 0.174 3.826 5 H 0.067 0.933 6 N -0.717 5.717 7 C -0.244 4.244 8 H 0.072 0.928 9 C -0.011 4.011 10 N -0.931 5.931 11 Si 0.909 3.091 12 H -0.290 1.290 13 H -0.281 1.281 14 H -0.292 1.292 15 C -0.153 4.153 16 C 0.094 3.906 17 N -0.586 5.586 18 C 0.624 3.376 19 O -0.513 6.513 20 C 0.141 3.859 21 N -0.249 5.249 22 N -0.061 5.061 23 N -0.138 5.138 24 C 0.093 3.907 25 N -0.251 5.251 26 H 0.058 0.942 27 H 0.061 0.939 28 H 0.084 0.916 29 H 0.391 0.609 30 H 0.256 0.744 31 H 0.075 0.925 32 H 0.078 0.922 33 H 0.088 0.912 34 H 0.069 0.931 35 H 0.105 0.895 36 H 0.115 0.885 37 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.677 -3.136 20.947 22.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.028 3.972 3 H 0.097 0.903 4 C 0.062 3.938 5 H 0.085 0.915 6 N -0.360 5.360 7 C -0.375 4.375 8 H 0.090 0.910 9 C -0.207 4.207 10 N -0.579 5.579 11 Si 0.739 3.261 12 H -0.217 1.217 13 H -0.207 1.207 14 H -0.218 1.218 15 C -0.195 4.195 16 C -0.028 4.028 17 N -0.319 5.319 18 C 0.405 3.595 19 O -0.386 6.386 20 C -0.143 4.143 21 N -0.123 5.123 22 N -0.055 5.055 23 N -0.051 5.051 24 C -0.047 4.047 25 N -0.105 5.105 26 H 0.077 0.923 27 H 0.080 0.920 28 H 0.103 0.897 29 H 0.229 0.771 30 H 0.066 0.934 31 H 0.093 0.907 32 H 0.097 0.903 33 H 0.107 0.893 34 H 0.088 0.912 35 H 0.123 0.877 36 H 0.134 0.866 37 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 8.648 -3.060 21.280 23.173 hybrid contribution -0.254 0.041 -0.901 0.937 sum 8.394 -3.019 20.379 22.246 Atomic orbital electron populations 1.22040 0.94186 1.02700 1.03023 1.22053 0.95660 0.95816 0.83653 0.90337 1.21205 0.93290 0.92220 0.87133 0.91495 1.42674 1.04739 1.86333 1.02278 1.19248 0.92784 1.41999 0.83435 0.90985 1.24754 0.95258 1.02583 0.98106 1.69661 0.99058 1.56758 1.32423 0.86173 0.77224 0.77641 0.85016 1.21692 1.20698 1.21813 1.23577 1.01826 1.01062 0.93009 1.22662 0.94231 0.88750 0.97202 1.48380 1.49062 1.30731 1.03737 1.15666 0.80918 0.83031 0.79867 1.90834 1.37697 1.27530 1.82523 1.25369 1.00815 0.96491 0.91615 1.76262 1.13351 1.09773 1.12959 1.78944 1.16000 1.16953 0.93555 1.50247 1.28282 1.15350 1.11182 1.22526 1.06425 1.06536 0.69178 1.75093 1.15978 1.13062 1.06378 0.92326 0.92019 0.89726 0.77090 0.93387 0.90656 0.90312 0.89341 0.91236 0.87686 0.86632 0.86827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.03 7.94 37.15 0.29 -2.74 16 2 C 0.13 2.34 3.50 -66.79 -0.23 2.10 16 3 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 4 C 0.17 3.33 3.46 -66.10 -0.23 3.10 16 5 H 0.07 1.26 8.11 -51.93 -0.42 0.84 16 6 N -0.72 -17.20 4.98 -51.66 -0.26 -17.46 16 7 C -0.24 -6.50 9.97 -15.06 -0.15 -6.65 16 8 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 9 C -0.01 -0.30 5.50 -17.43 -0.10 -0.39 16 10 N -0.93 -27.48 13.06 55.49 0.72 -26.76 16 11 Si 0.91 21.91 29.55 -169.99 -5.02 16.89 16 12 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 13 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 14 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 15 C -0.15 -2.59 6.77 -24.58 -0.17 -2.75 16 16 C 0.09 1.39 6.16 -2.53 -0.02 1.38 16 17 N -0.59 -9.69 3.09 -163.84 -0.51 -10.20 16 18 C 0.62 10.78 7.65 -12.26 -0.09 10.69 16 19 O -0.51 -10.10 16.00 5.33 0.09 -10.01 16 20 C 0.14 2.17 7.95 -156.24 -1.24 0.93 16 21 N -0.25 -3.55 9.68 32.10 0.31 -3.24 16 22 N -0.06 -0.74 13.23 60.35 0.80 0.06 16 23 N -0.14 -1.41 4.39 -16.65 -0.07 -1.48 16 24 C 0.09 0.32 11.62 59.85 0.70 1.01 16 25 N -0.25 -3.45 12.17 32.11 0.39 -3.06 16 26 H 0.06 1.13 8.06 -51.93 -0.42 0.71 16 27 H 0.06 1.15 6.77 -51.93 -0.35 0.80 16 28 H 0.08 1.71 6.72 -51.93 -0.35 1.36 16 29 H 0.39 9.91 4.99 -40.82 -0.20 9.71 16 30 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 31 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 32 H 0.08 1.26 8.14 -51.93 -0.42 0.83 16 33 H 0.09 1.27 6.18 -51.93 -0.32 0.95 16 34 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.10 0.17 8.14 -51.93 -0.42 -0.25 16 36 H 0.12 0.12 8.14 -51.93 -0.42 -0.31 16 37 H 0.11 0.22 8.14 -51.93 -0.42 -0.20 16 LS Contribution 311.94 15.07 4.70 4.70 Total: -1.00 -33.41 311.94 -4.66 -38.07 By element: Atomic # 1 Polarization: 10.38 SS G_CDS: -4.57 Total: 5.81 kcal Atomic # 6 Polarization: 7.91 SS G_CDS: -1.24 Total: 6.68 kcal Atomic # 7 Polarization: -63.52 SS G_CDS: 1.39 Total: -62.13 kcal Atomic # 8 Polarization: -10.10 SS G_CDS: 0.09 Total: -10.01 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -33.41 -4.66 -38.07 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986659895.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.159 kcal (2) G-P(sol) polarization free energy of solvation -33.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 136.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.065 kcal (6) G-S(sol) free energy of system = (1) + (5) 132.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds