Wall clock time and date at job start Tue Mar 31 2020 02:13:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.87482 * 2 1 4 4 C 1.54325 * 109.88065 * 121.01765 * 2 1 3 5 5 H 1.08997 * 110.72163 * 215.74373 * 4 2 1 6 6 N 1.46503 * 110.87087 * 338.94229 * 4 2 1 7 7 C 1.36939 * 119.99620 * 200.06164 * 6 4 2 8 8 H 1.08002 * 120.00422 * 0.02562 * 7 6 4 9 9 C 1.38815 * 119.99685 * 180.02562 * 7 6 4 10 10 N 1.31619 * 120.00122 * 359.97438 * 9 7 6 11 11 Si 1.86805 * 119.99767 * 180.02562 * 9 7 6 12 12 H 1.48496 * 109.47407 * 59.99575 * 11 9 7 13 13 H 1.48500 * 109.46659 * 179.97438 * 11 9 7 14 14 H 1.48504 * 109.46778 * 299.99443 * 11 9 7 15 15 C 1.55154 * 102.94303 * 97.37930 * 4 2 1 16 16 C 1.54908 * 101.58289 * 35.49976 * 15 4 2 17 17 N 1.47290 * 109.98499 * 238.92900 * 2 1 3 18 18 C 1.34774 * 125.79121 * 59.43218 * 17 2 1 19 19 O 1.21538 * 120.00413 * 0.02562 * 18 17 2 20 20 C 1.48004 * 119.99929 * 180.02562 * 18 17 2 21 21 N 1.34192 * 126.69719 * 359.68559 * 20 18 17 22 22 N 1.28980 * 107.25203 * 179.89766 * 21 20 18 23 23 N 1.28724 * 108.98668 * 0.37022 * 22 21 20 24 24 C 1.46505 * 125.31818 * 179.73012 * 23 22 21 25 25 N 1.28866 * 109.35929 * 359.76603 * 23 22 21 26 26 H 1.09005 * 109.47358 * 298.98523 * 1 2 3 27 27 H 1.09002 * 109.47151 * 58.98048 * 1 2 3 28 28 H 1.08998 * 109.47688 * 178.98565 * 1 2 3 29 29 H 0.96998 * 120.00254 * 20.06980 * 6 4 2 30 30 H 0.96995 * 119.99947 * 179.97438 * 10 9 7 31 31 H 1.09008 * 111.00345 * 277.42446 * 15 4 2 32 32 H 1.08999 * 111.00564 * 153.57779 * 15 4 2 33 33 H 1.09002 * 110.36632 * 81.83114 * 16 15 4 34 34 H 1.08995 * 110.36781 * 204.04351 * 16 15 4 35 35 H 1.09001 * 109.46685 * 270.04187 * 24 23 22 36 36 H 1.08995 * 109.47360 * 30.03712 * 24 23 22 37 37 H 1.08995 * 109.46781 * 150.04321 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0548 -0.7478 1.2438 5 1 2.9640 -0.2794 1.6203 6 7 1.0309 -0.8031 2.2902 7 6 1.3922 -1.0397 3.5897 8 1 2.4319 -1.1851 3.8433 9 6 0.4220 -1.0926 4.5811 10 7 -0.8450 -0.9148 4.2722 11 14 0.9149 -1.4146 6.3540 12 1 1.8389 -0.3464 6.8127 13 1 -0.2976 -1.4215 7.2113 14 1 1.5952 -2.7313 6.4472 15 6 2.3556 -2.1674 0.6945 16 6 2.8617 -1.8473 -0.7342 17 7 2.0334 -0.7144 -1.1856 18 6 1.7803 -0.3885 -2.4686 19 8 1.0805 0.5716 -2.7252 20 6 2.3545 -1.1998 -3.5653 21 7 3.1446 -2.2768 -3.4371 22 7 3.4235 -2.6904 -4.6265 23 7 2.8516 -1.9183 -5.4832 24 6 2.9360 -2.0591 -6.9390 25 7 2.1940 -1.0018 -4.8601 26 1 -0.3634 0.4980 0.8990 27 1 -0.3633 0.5296 -0.8807 28 1 -0.3634 -1.0274 -0.0182 29 1 0.0972 -0.6723 2.0625 30 1 -1.5229 -0.9522 4.9649 31 1 1.4502 -2.7736 0.6616 32 1 3.1310 -2.6578 1.2830 33 1 3.9134 -1.5619 -0.7090 34 1 2.7182 -2.7068 -1.3889 35 1 3.7885 -1.4903 -7.3102 36 1 3.0615 -3.1109 -7.1957 37 1 2.0208 -1.6807 -7.3942 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000986659911.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:13:23 Heat of formation + Delta-G solvation = 132.279183 kcal Electronic energy + Delta-G solvation = -21970.566864 eV Core-core repulsion = 18594.699597 eV Total energy + Delta-G solvation = -3375.867268 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.139 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -44.60037 -39.96985 -37.54234 -35.51327 -34.16527 -33.36540 -31.72420 -30.70126 -29.51353 -28.57639 -25.43499 -25.18591 -23.62986 -23.01782 -22.50226 -20.33323 -18.96850 -17.95210 -17.83741 -17.44790 -16.74775 -15.83425 -15.59508 -14.65694 -14.36455 -14.29887 -13.92451 -13.75987 -13.62332 -13.34202 -12.90818 -12.54761 -12.38160 -12.05852 -11.78103 -11.58931 -11.32970 -11.29588 -11.07509 -10.95371 -10.76055 -10.59439 -10.40987 -10.25745 -10.07593 -9.93158 -9.63359 -8.92172 -8.48876 -7.00824 -5.79875 -3.09667 0.79222 1.32941 1.50623 2.71809 3.11600 3.43613 3.48271 3.49132 3.84065 3.86371 4.40241 4.55039 4.56938 4.71001 4.96711 5.12389 5.23731 5.33033 5.48451 5.60729 5.63047 5.71728 5.76337 5.87996 6.07536 6.19553 6.23331 6.37085 6.54757 6.62650 6.68792 6.81851 7.00202 7.54746 7.68117 7.87908 8.13955 8.38669 9.50281 10.04903 10.40026 11.42581 Molecular weight = 280.14amu Principal moments of inertia in cm(-1) A = 0.043983 B = 0.003629 C = 0.003447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 636.460563 B = 7714.194792 C = 8120.924887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.132 3.868 3 H 0.078 0.922 4 C 0.174 3.826 5 H 0.066 0.934 6 N -0.717 5.717 7 C -0.244 4.244 8 H 0.072 0.928 9 C -0.010 4.010 10 N -0.932 5.932 11 Si 0.909 3.091 12 H -0.286 1.286 13 H -0.291 1.291 14 H -0.285 1.285 15 C -0.153 4.153 16 C 0.094 3.906 17 N -0.586 5.586 18 C 0.624 3.376 19 O -0.513 6.513 20 C 0.141 3.859 21 N -0.249 5.249 22 N -0.061 5.061 23 N -0.138 5.138 24 C 0.093 3.907 25 N -0.251 5.251 26 H 0.084 0.916 27 H 0.061 0.939 28 H 0.058 0.942 29 H 0.391 0.609 30 H 0.257 0.743 31 H 0.075 0.925 32 H 0.078 0.922 33 H 0.069 0.931 34 H 0.088 0.912 35 H 0.105 0.895 36 H 0.115 0.885 37 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.567 -3.102 -20.946 22.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.029 3.971 3 H 0.096 0.904 4 C 0.062 3.938 5 H 0.084 0.916 6 N -0.361 5.361 7 C -0.375 4.375 8 H 0.090 0.910 9 C -0.207 4.207 10 N -0.579 5.579 11 Si 0.740 3.260 12 H -0.212 1.212 13 H -0.217 1.217 14 H -0.212 1.212 15 C -0.195 4.195 16 C -0.029 4.029 17 N -0.319 5.319 18 C 0.406 3.594 19 O -0.386 6.386 20 C -0.143 4.143 21 N -0.123 5.123 22 N -0.054 5.054 23 N -0.051 5.051 24 C -0.047 4.047 25 N -0.105 5.105 26 H 0.102 0.898 27 H 0.080 0.920 28 H 0.077 0.923 29 H 0.229 0.771 30 H 0.067 0.933 31 H 0.094 0.906 32 H 0.097 0.903 33 H 0.088 0.912 34 H 0.106 0.894 35 H 0.123 0.877 36 H 0.134 0.866 37 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 8.536 -3.017 -21.280 23.126 hybrid contribution -0.215 0.019 0.897 0.922 sum 8.321 -2.998 -20.384 22.220 Atomic orbital electron populations 1.22041 0.94182 1.02747 1.02988 1.22007 0.95629 0.95845 0.83623 0.90377 1.21196 0.93288 0.92241 0.87084 0.91634 1.42663 1.05134 1.85367 1.02912 1.19197 0.93018 1.41349 0.83949 0.91039 1.24752 0.95295 1.02491 0.98126 1.69646 0.99336 1.56285 1.32671 0.86248 0.76999 0.78075 0.84712 1.21223 1.21731 1.21215 1.23575 1.01831 1.01060 0.92986 1.22660 0.94263 0.88749 0.97203 1.48358 1.49005 1.30815 1.03718 1.15648 0.80905 0.83036 0.79840 1.90834 1.37785 1.27481 1.82485 1.25360 1.00678 0.96658 0.91593 1.76260 1.13185 1.09882 1.13004 1.78943 1.16057 1.16919 0.93525 1.50249 1.28404 1.15235 1.11178 1.22527 1.06554 1.06407 0.69175 1.75090 1.15965 1.13037 1.06408 0.89756 0.92013 0.92274 0.77088 0.93330 0.90632 0.90314 0.91234 0.89376 0.87707 0.86622 0.86813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.03 7.96 37.16 0.30 -2.73 16 2 C 0.13 2.35 3.48 -66.81 -0.23 2.12 16 3 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 4 C 0.17 3.34 3.45 -66.09 -0.23 3.11 16 5 H 0.07 1.24 8.12 -51.93 -0.42 0.82 16 6 N -0.72 -17.23 5.02 -51.65 -0.26 -17.49 16 7 C -0.24 -6.52 9.98 -15.06 -0.15 -6.67 16 8 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 9 C -0.01 -0.29 5.50 -17.43 -0.10 -0.38 16 10 N -0.93 -27.51 13.06 55.49 0.72 -26.78 16 11 Si 0.91 21.92 29.55 -169.99 -5.02 16.89 16 12 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 13 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 14 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 15 C -0.15 -2.59 6.77 -24.58 -0.17 -2.75 16 16 C 0.09 1.39 6.15 -2.53 -0.02 1.38 16 17 N -0.59 -9.69 3.09 -163.86 -0.51 -10.20 16 18 C 0.62 10.79 7.65 -12.26 -0.09 10.69 16 19 O -0.51 -10.09 16.03 5.33 0.09 -10.00 16 20 C 0.14 2.17 7.95 -156.24 -1.24 0.93 16 21 N -0.25 -3.55 9.68 32.10 0.31 -3.24 16 22 N -0.06 -0.74 13.23 60.35 0.80 0.06 16 23 N -0.14 -1.41 4.39 -16.65 -0.07 -1.48 16 24 C 0.09 0.32 11.62 59.85 0.70 1.01 16 25 N -0.25 -3.45 12.16 32.11 0.39 -3.06 16 26 H 0.08 1.69 6.68 -51.93 -0.35 1.35 16 27 H 0.06 1.15 6.79 -51.93 -0.35 0.79 16 28 H 0.06 1.14 8.08 -51.93 -0.42 0.72 16 29 H 0.39 9.91 4.95 -40.82 -0.20 9.71 16 30 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 31 H 0.07 1.39 8.14 -51.92 -0.42 0.97 16 32 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 33 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 34 H 0.09 1.27 6.19 -51.93 -0.32 0.95 16 35 H 0.10 0.15 8.14 -51.93 -0.42 -0.27 16 36 H 0.12 0.13 8.14 -51.93 -0.42 -0.30 16 37 H 0.11 0.23 8.14 -51.93 -0.42 -0.20 16 LS Contribution 312.02 15.07 4.70 4.70 Total: -1.00 -33.41 312.02 -4.65 -38.06 By element: Atomic # 1 Polarization: 10.39 SS G_CDS: -4.57 Total: 5.82 kcal Atomic # 6 Polarization: 7.93 SS G_CDS: -1.23 Total: 6.70 kcal Atomic # 7 Polarization: -63.56 SS G_CDS: 1.39 Total: -62.18 kcal Atomic # 8 Polarization: -10.09 SS G_CDS: 0.09 Total: -10.00 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -33.41 -4.65 -38.06 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986659911.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.341 kcal (2) G-P(sol) polarization free energy of solvation -33.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 136.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.062 kcal (6) G-S(sol) free energy of system = (1) + (5) 132.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds