Wall clock time and date at job start Tue Mar 31 2020 02:12:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09006 * 109.99597 * 2 1 4 4 C 1.54329 * 109.99405 * 238.96333 * 2 1 3 5 5 C 1.55164 * 103.02052 * 218.66735 * 4 2 1 6 6 H 1.09000 * 111.03695 * 277.21590 * 5 4 2 7 7 N 1.46494 * 111.00493 * 153.37602 * 5 4 2 8 8 C 1.36941 * 119.99706 * 161.34824 * 7 5 4 9 9 H 1.07992 * 120.00482 * 0.02562 * 8 7 5 10 10 C 1.38811 * 119.99621 * 180.02562 * 8 7 5 11 11 N 1.31618 * 120.00303 * 0.02562 * 10 8 7 12 12 Si 1.86801 * 119.99832 * 179.97438 * 10 8 7 13 13 H 1.48499 * 109.47177 * 0.02562 * 12 10 8 14 14 H 1.48499 * 109.47209 * 119.99926 * 12 10 8 15 15 H 1.48503 * 109.47416 * 240.00068 * 12 10 8 16 16 C 1.54915 * 101.57936 * 35.30394 * 5 4 2 17 17 N 1.47026 * 109.88201 * 121.09067 * 2 1 3 18 18 C 1.34774 * 125.64942 * 298.39902 * 17 2 1 19 19 O 1.21278 * 120.00048 * 359.71500 * 18 17 2 20 20 C 1.50701 * 120.00130 * 179.71501 * 18 17 2 21 21 N 1.46499 * 109.47123 * 179.97438 * 20 18 17 22 22 C 1.34602 * 126.43677 * 125.00513 * 21 20 18 23 23 N 1.31066 * 106.67727 * 180.20197 * 22 21 20 24 24 N 1.28842 * 107.99355 * 359.62850 * 23 22 21 25 25 N 1.28740 * 109.39538 * 0.38110 * 24 23 22 26 26 H 1.09004 * 109.47786 * 300.36118 * 1 2 3 27 27 H 1.09003 * 109.46858 * 60.35780 * 1 2 3 28 28 H 1.08996 * 109.47178 * 180.36015 * 1 2 3 29 29 H 1.08997 * 110.85431 * 100.19718 * 4 2 1 30 30 H 1.09001 * 110.51237 * 336.96959 * 4 2 1 31 31 H 0.96994 * 120.00445 * 341.35412 * 7 5 4 32 32 H 0.97001 * 119.99776 * 179.97438 * 11 10 8 33 33 H 1.09008 * 110.36188 * 204.15344 * 16 5 4 34 34 H 1.08992 * 110.36671 * 81.83401 * 16 5 4 35 35 H 1.09004 * 109.46950 * 59.99804 * 20 18 17 36 36 H 1.09004 * 109.46819 * 300.00282 * 20 18 17 37 37 H 1.08002 * 126.65847 * 359.93092 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0576 -0.7477 -1.2427 5 6 3.2864 -1.5184 -0.6913 6 1 4.1674 -0.8774 -0.6578 7 7 3.5475 -2.7242 -1.4811 8 6 4.7735 -3.3313 -1.4188 9 1 5.5476 -2.9213 -0.7872 10 6 5.0211 -4.4736 -2.1675 11 7 4.0778 -4.9730 -2.9377 12 14 6.6936 -5.3013 -2.0831 13 1 7.5719 -4.5487 -1.1517 14 1 6.5325 -6.6941 -1.5940 15 1 7.3059 -5.3193 -3.4359 16 6 2.8098 -1.8825 0.7370 17 7 2.0299 -0.7140 1.1840 18 6 1.8073 -0.3619 2.4658 19 8 1.1473 0.6239 2.7180 20 6 2.3782 -1.1932 3.5856 21 7 1.9981 -0.6057 4.8727 22 6 1.3610 -1.2311 5.8800 23 7 1.2128 -0.3482 6.8372 24 7 1.7388 0.7596 6.4417 25 7 2.2116 0.6083 5.2539 26 1 -0.3635 0.5194 0.8867 27 1 -0.3633 0.5083 -0.8932 28 1 -0.3633 -1.0276 0.0065 29 1 2.3597 -0.0450 -2.0191 30 1 1.3053 -1.4406 -1.6195 31 1 2.8522 -3.0927 -2.0482 32 1 4.2511 -5.7711 -3.4611 33 1 3.6655 -2.0411 1.3934 34 1 2.1801 -2.7717 0.7116 35 1 3.4650 -1.2157 3.5037 36 1 1.9877 -2.2087 3.5198 37 1 1.0316 -2.2596 5.8947 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000987991866.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:12:23 Heat of formation + Delta-G solvation = 85.487565 kcal Electronic energy + Delta-G solvation = -21795.208472 eV Core-core repulsion = 18417.312168 eV Total energy + Delta-G solvation = -3377.896304 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.139 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -45.17935 -41.35156 -38.97271 -36.47400 -35.95754 -33.58751 -33.30029 -32.97589 -30.19550 -29.73468 -26.74236 -25.83250 -24.89449 -24.66101 -22.90115 -21.78329 -20.25131 -19.24008 -18.79594 -18.43361 -17.59550 -17.40478 -16.88039 -16.49461 -16.26931 -15.56224 -15.33130 -14.82949 -14.56775 -14.34950 -14.19888 -13.87023 -13.54116 -13.42742 -13.16703 -13.04712 -12.87152 -12.81256 -12.32374 -12.24729 -12.16167 -12.03000 -11.99521 -11.70343 -11.51048 -11.45118 -11.04563 -10.87996 -9.75878 -9.01929 -7.91671 -5.20961 0.25685 0.91372 1.23959 1.36726 1.52758 1.55766 1.63106 1.86680 2.59322 3.05012 3.40996 3.41180 3.47917 3.72455 3.81854 3.94092 3.97823 3.99779 4.16535 4.33577 4.37785 4.46459 4.52322 4.68361 4.71478 4.78005 4.87501 5.06281 5.12527 5.15439 5.23467 5.35967 5.41139 5.60250 6.29620 6.39274 6.91790 7.38423 7.56537 8.10045 8.32853 9.31258 Molecular weight = 280.14amu Principal moments of inertia in cm(-1) A = 0.020700 B = 0.004048 C = 0.003527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1352.337026 B = 6916.140419 C = 7937.021829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.141 3.859 3 H 0.072 0.928 4 C -0.125 4.125 5 C 0.163 3.837 6 H 0.063 0.937 7 N -0.723 5.723 8 C -0.238 4.238 9 H 0.083 0.917 10 C -0.067 4.067 11 N -0.966 5.966 12 Si 0.964 3.036 13 H -0.264 1.264 14 H -0.296 1.296 15 H -0.302 1.302 16 C 0.080 3.920 17 N -0.598 5.598 18 C 0.513 3.487 19 O -0.566 6.566 20 C 0.098 3.902 21 N -0.298 5.298 22 C 0.184 3.816 23 N -0.344 5.344 24 N -0.117 5.117 25 N -0.096 5.096 26 H 0.047 0.953 27 H 0.079 0.921 28 H 0.058 0.942 29 H 0.087 0.913 30 H 0.078 0.922 31 H 0.377 0.623 32 H 0.250 0.750 33 H 0.093 0.907 34 H 0.077 0.923 35 H 0.159 0.841 36 H 0.193 0.807 37 H 0.293 0.707 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.785 3.063 9.706 11.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.037 3.963 3 H 0.090 0.910 4 C -0.163 4.163 5 C 0.052 3.948 6 H 0.081 0.919 7 N -0.362 5.362 8 C -0.369 4.369 9 H 0.101 0.899 10 C -0.260 4.260 11 N -0.616 5.616 12 Si 0.794 3.206 13 H -0.188 1.188 14 H -0.223 1.223 15 H -0.230 1.230 16 C -0.045 4.045 17 N -0.332 5.332 18 C 0.300 3.700 19 O -0.445 6.445 20 C -0.026 4.026 21 N -0.100 5.100 22 C -0.114 4.114 23 N -0.191 5.191 24 N -0.111 5.111 25 N -0.083 5.083 26 H 0.066 0.934 27 H 0.098 0.902 28 H 0.078 0.922 29 H 0.106 0.894 30 H 0.097 0.903 31 H 0.210 0.790 32 H 0.059 0.941 33 H 0.111 0.889 34 H 0.095 0.905 35 H 0.177 0.823 36 H 0.210 0.790 37 H 0.308 0.692 Dipole moment (debyes) X Y Z Total from point charges -4.806 4.855 10.542 12.562 hybrid contribution 0.493 -1.491 -1.102 1.918 sum -4.313 3.365 9.440 10.911 Atomic orbital electron populations 1.22039 0.94236 1.02273 1.02491 1.21548 0.94816 0.95978 0.83920 0.91039 1.22915 0.97805 0.99462 0.96165 1.21449 0.95760 0.87890 0.89672 0.91932 1.42443 1.13213 1.28756 1.51809 1.19647 0.91271 1.05343 1.20684 0.89886 1.25436 1.00642 0.99874 1.00039 1.69794 1.34177 1.24683 1.32974 0.85224 0.80415 0.78152 0.76823 1.18790 1.22337 1.22978 1.23362 0.95251 0.87162 0.98761 1.48528 1.51716 1.28772 1.04181 1.20302 0.80912 0.85455 0.83307 1.90805 1.41599 1.28636 1.83446 1.22433 1.05873 0.99160 0.75091 1.48379 1.38289 1.07578 1.15726 1.28774 0.95553 1.04137 0.82914 1.74876 1.19980 0.97712 1.26576 1.78622 1.11424 1.17886 1.03200 1.78940 1.19363 1.01014 1.09001 0.93429 0.90180 0.92245 0.89402 0.90343 0.78995 0.94119 0.88871 0.90494 0.82310 0.78980 0.69155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.41 9.11 71.98 0.66 -2.76 16 2 C 0.14 3.31 3.46 45.34 0.16 3.46 16 3 H 0.07 1.77 8.14 -2.38 -0.02 1.75 16 4 C -0.12 -3.11 6.11 31.79 0.19 -2.92 16 5 C 0.16 4.83 3.69 46.39 0.17 5.00 16 6 H 0.06 1.93 8.13 -2.39 -0.02 1.91 16 7 N -0.72 -29.50 5.28 -316.37 -1.67 -31.16 16 8 C -0.24 -11.09 9.98 84.03 0.84 -10.25 16 9 H 0.08 3.65 7.83 -2.91 -0.02 3.63 16 10 C -0.07 -3.39 5.50 84.86 0.47 -2.93 16 11 N -0.97 -53.20 13.06 21.65 0.28 -52.92 16 12 Si 0.96 41.25 29.55 68.60 2.03 43.28 16 13 H -0.26 -10.45 7.11 99.48 0.71 -9.74 16 14 H -0.30 -12.81 7.11 99.48 0.71 -12.11 16 15 H -0.30 -13.40 7.11 99.48 0.71 -12.69 16 16 C 0.08 1.81 6.38 86.86 0.55 2.37 16 17 N -0.60 -13.32 3.06 -788.04 -2.41 -15.74 16 18 C 0.51 11.74 7.66 87.66 0.67 12.41 16 19 O -0.57 -18.27 14.75 -3.02 -0.04 -18.31 16 20 C 0.10 1.29 5.97 85.63 0.51 1.80 16 21 N -0.30 -5.94 3.19 -355.55 -1.13 -7.07 16 22 C 0.18 2.92 12.79 180.27 2.31 5.23 16 23 N -0.34 -8.95 12.36 -60.29 -0.74 -9.69 16 24 N -0.12 -3.73 13.43 37.01 0.50 -3.23 16 25 N -0.10 -2.85 12.29 37.02 0.45 -2.40 16 26 H 0.05 1.25 6.89 -2.38 -0.02 1.23 16 27 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 28 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 29 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 30 H 0.08 2.02 7.70 -2.39 -0.02 2.00 16 31 H 0.38 16.98 7.71 -92.71 -0.71 16.27 16 32 H 0.25 13.55 8.31 -92.71 -0.77 12.78 16 33 H 0.09 1.76 7.48 -2.38 -0.02 1.74 16 34 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 35 H 0.16 1.45 7.85 -2.38 -0.02 1.43 16 36 H 0.19 0.62 8.08 -2.38 -0.02 0.60 16 37 H 0.29 0.50 8.06 -2.91 -0.02 0.48 16 Total: -1.00 -74.04 317.67 4.16 -69.88 By element: Atomic # 1 Polarization: 15.56 SS G_CDS: 0.38 Total: 15.94 kcal Atomic # 6 Polarization: 4.90 SS G_CDS: 6.53 Total: 11.43 kcal Atomic # 7 Polarization: -117.49 SS G_CDS: -4.73 Total: -122.22 kcal Atomic # 8 Polarization: -18.27 SS G_CDS: -0.04 Total: -18.31 kcal Atomic # 14 Polarization: 41.25 SS G_CDS: 2.03 Total: 43.28 kcal Total: -74.04 4.16 -69.88 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987991866.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.371 kcal (2) G-P(sol) polarization free energy of solvation -74.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.884 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds