Wall clock time and date at job start Tue Mar 31 2020 02:12:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09007 * 109.99586 * 2 1 4 4 C 1.54329 * 109.99319 * 238.96337 * 2 1 3 5 5 C 1.55159 * 103.02245 * 218.66600 * 4 2 1 6 6 H 1.09005 * 111.03709 * 277.21700 * 5 4 2 7 7 N 1.46500 * 111.00599 * 153.37817 * 5 4 2 8 8 C 1.36941 * 119.99729 * 161.35219 * 7 5 4 9 9 H 1.08001 * 120.00191 * 359.97438 * 8 7 5 10 10 C 1.38810 * 119.99757 * 180.02562 * 8 7 5 11 11 N 1.31620 * 120.00140 * 359.97438 * 10 8 7 12 12 Si 1.86801 * 119.99918 * 179.97438 * 10 8 7 13 13 H 1.48501 * 109.46984 * 59.99412 * 12 10 8 14 14 H 1.48499 * 109.47086 * 179.97438 * 12 10 8 15 15 H 1.48495 * 109.47076 * 299.99632 * 12 10 8 16 16 C 1.54910 * 101.58155 * 35.30330 * 5 4 2 17 17 N 1.47019 * 109.88341 * 121.09391 * 2 1 3 18 18 C 1.34784 * 125.64840 * 298.39513 * 17 2 1 19 19 O 1.21283 * 119.99667 * 359.71499 * 18 17 2 20 20 C 1.50693 * 119.99987 * 179.71833 * 18 17 2 21 21 N 1.46497 * 109.47119 * 180.02562 * 20 18 17 22 22 N 1.28889 * 125.45037 * 89.99674 * 21 20 18 23 23 C 1.31042 * 107.91546 * 179.97438 * 22 21 20 24 24 N 1.33310 * 106.90432 * 0.02562 * 23 22 21 25 25 N 1.28777 * 125.45063 * 269.69181 * 21 20 18 26 26 H 1.09002 * 109.46871 * 300.36166 * 1 2 3 27 27 H 1.08998 * 109.47010 * 60.35868 * 1 2 3 28 28 H 1.08994 * 109.46849 * 180.35839 * 1 2 3 29 29 H 1.08997 * 110.85254 * 100.19594 * 4 2 1 30 30 H 1.09009 * 110.66844 * 337.04199 * 4 2 1 31 31 H 0.96999 * 120.00257 * 341.34867 * 7 5 4 32 32 H 0.96995 * 120.00080 * 180.02562 * 11 10 8 33 33 H 1.09002 * 110.36832 * 204.15743 * 16 5 4 34 34 H 1.08998 * 110.46009 * 81.87490 * 16 5 4 35 35 H 1.09002 * 109.47106 * 299.99491 * 20 18 17 36 36 H 1.09003 * 109.47551 * 59.99749 * 20 18 17 37 37 H 1.08001 * 126.54780 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0244 0.0000 4 6 2.0577 -0.7477 -1.2427 5 6 3.2864 -1.5183 -0.6914 6 1 4.1675 -0.8774 -0.6579 7 7 3.5476 -2.7242 -1.4812 8 6 4.7735 -3.3313 -1.4189 9 1 5.5479 -2.9208 -0.7879 10 6 5.0212 -4.4736 -2.1677 11 7 4.0776 -4.9735 -2.9371 12 14 6.6937 -5.3013 -2.0832 13 1 6.9679 -5.7218 -0.6857 14 1 6.7014 -6.4932 -2.9690 15 1 7.7412 -4.3471 -2.5275 16 6 2.8100 -1.8825 0.7369 17 7 2.0300 -0.7140 1.1839 18 6 1.8074 -0.3619 2.4658 19 8 1.1475 0.6239 2.7179 20 6 2.3785 -1.1932 3.5855 21 7 1.9974 -0.6064 4.8726 22 7 0.9317 -0.8930 5.5386 23 6 0.9346 -0.1726 6.6332 24 7 2.0443 0.5657 6.6085 25 7 2.6762 0.2742 5.5223 26 1 -0.3633 0.5195 0.8868 27 1 -0.3633 0.5082 -0.8932 28 1 -0.3633 -1.0276 0.0064 29 1 2.3598 -0.0450 -2.0191 30 1 1.3067 -1.4406 -1.6225 31 1 2.8522 -3.0927 -2.0483 32 1 4.2506 -5.7719 -3.4601 33 1 3.6656 -2.0411 1.3933 34 1 2.1807 -2.7721 0.7134 35 1 1.9879 -2.2087 3.5198 36 1 3.4652 -1.2158 3.5036 37 1 0.1812 -0.1757 7.4071 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000988827205.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:12:38 Heat of formation + Delta-G solvation = 118.131519 kcal Electronic energy + Delta-G solvation = -21793.926065 eV Core-core repulsion = 18417.445308 eV Total energy + Delta-G solvation = -3376.480756 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.139 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -44.40878 -40.27595 -37.77841 -35.06369 -34.36860 -33.18154 -32.12471 -31.52125 -29.18444 -28.49599 -25.65959 -24.20637 -24.04169 -23.51447 -21.77664 -20.48606 -19.32404 -18.12262 -17.56587 -17.38654 -16.58309 -16.16352 -15.85013 -15.01361 -14.91334 -14.26250 -13.91435 -13.79654 -13.50597 -13.23501 -13.04893 -12.86376 -12.47744 -12.28635 -12.04861 -11.88245 -11.28978 -11.25852 -11.11337 -11.06657 -10.89932 -10.78696 -10.71831 -10.46057 -10.16863 -9.93795 -9.85923 -9.15718 -8.66293 -7.23694 -5.96976 -3.29167 1.08509 1.64042 2.16368 2.32749 2.88380 3.32061 3.37626 3.38585 3.95124 4.09832 4.27248 4.43117 4.60048 4.78433 4.85088 4.92372 5.07831 5.33796 5.38626 5.52695 5.58483 5.62588 5.63850 5.65410 5.85941 5.93742 5.95195 6.02651 6.17883 6.25686 6.29428 6.40649 6.66976 7.40930 7.51268 7.89215 8.20096 8.26578 9.32401 9.84320 10.18895 11.24577 Molecular weight = 280.14amu Principal moments of inertia in cm(-1) A = 0.020760 B = 0.004059 C = 0.003541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1348.433484 B = 6896.045578 C = 7904.781230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.141 3.859 3 H 0.076 0.924 4 C -0.136 4.136 5 C 0.174 3.826 6 H 0.067 0.933 7 N -0.711 5.711 8 C -0.255 4.255 9 H 0.073 0.927 10 C -0.005 4.005 11 N -0.928 5.928 12 Si 0.909 3.091 13 H -0.284 1.284 14 H -0.290 1.290 15 H -0.284 1.284 16 C 0.063 3.937 17 N -0.600 5.600 18 C 0.519 3.481 19 O -0.533 6.533 20 C 0.112 3.888 21 N -0.122 5.122 22 N -0.301 5.301 23 C 0.141 3.859 24 N -0.288 5.288 25 N -0.050 5.050 26 H 0.064 0.936 27 H 0.065 0.935 28 H 0.058 0.942 29 H 0.082 0.918 30 H 0.080 0.920 31 H 0.388 0.612 32 H 0.259 0.741 33 H 0.072 0.928 34 H 0.077 0.923 35 H 0.146 0.854 36 H 0.148 0.852 37 H 0.235 0.765 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.010 6.769 10.741 14.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.038 3.962 3 H 0.094 0.906 4 C -0.175 4.175 5 C 0.061 3.939 6 H 0.085 0.915 7 N -0.351 5.351 8 C -0.386 4.386 9 H 0.091 0.909 10 C -0.202 4.202 11 N -0.574 5.574 12 Si 0.739 3.261 13 H -0.211 1.211 14 H -0.216 1.216 15 H -0.211 1.211 16 C -0.063 4.063 17 N -0.334 5.334 18 C 0.304 3.696 19 O -0.410 6.410 20 C -0.012 4.012 21 N -0.034 5.034 22 N -0.151 5.151 23 C -0.162 4.162 24 N -0.160 5.160 25 N -0.044 5.044 26 H 0.083 0.917 27 H 0.084 0.916 28 H 0.077 0.923 29 H 0.100 0.900 30 H 0.099 0.901 31 H 0.223 0.777 32 H 0.069 0.931 33 H 0.091 0.909 34 H 0.095 0.905 35 H 0.164 0.836 36 H 0.165 0.835 37 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -5.631 7.369 10.590 14.077 hybrid contribution 0.138 -0.950 0.114 0.967 sum -5.493 6.419 10.703 13.636 Atomic orbital electron populations 1.22133 0.94838 1.02392 1.02602 1.21584 0.94402 0.96191 0.84019 0.90632 1.23020 0.99063 0.99727 0.95654 1.21264 0.94743 0.89546 0.88314 0.91472 1.42319 1.14333 1.27504 1.50924 1.19185 0.90254 1.06447 1.22724 0.90912 1.24779 0.97949 0.98382 0.99068 1.69641 1.32581 1.24095 1.31132 0.86260 0.83498 0.78905 0.77435 1.21074 1.21584 1.21050 1.23748 0.94567 0.87322 1.00644 1.48543 1.51810 1.29122 1.03893 1.19723 0.81494 0.85568 0.82847 1.90771 1.40033 1.27110 1.83117 1.22051 1.04549 0.98759 0.75820 1.49529 1.11582 1.25494 1.16756 1.74711 1.08045 1.25311 1.07008 1.27320 0.98481 0.93524 0.96840 1.75867 1.06518 1.21633 1.11936 1.79000 1.20045 1.04507 1.00809 0.91701 0.91580 0.92324 0.89981 0.90136 0.77735 0.93140 0.90934 0.90473 0.83627 0.83453 0.74878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.02 9.11 37.16 0.34 -1.68 16 2 C 0.14 1.85 3.46 -66.95 -0.23 1.62 16 3 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 4 C -0.14 -1.86 6.11 -24.89 -0.15 -2.02 16 5 C 0.17 2.85 3.69 -65.78 -0.24 2.61 16 6 H 0.07 1.13 8.13 -51.93 -0.42 0.71 16 7 N -0.71 -15.33 5.28 -51.35 -0.27 -15.60 16 8 C -0.26 -6.28 9.98 -15.06 -0.15 -6.43 16 9 H 0.07 1.72 7.83 -52.49 -0.41 1.31 16 10 C 0.00 -0.12 5.50 -17.43 -0.10 -0.22 16 11 N -0.93 -25.78 13.06 55.49 0.72 -25.06 16 12 Si 0.91 20.62 29.55 -169.99 -5.02 15.60 16 13 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 14 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 15 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 16 C 0.06 0.87 6.38 -2.53 -0.02 0.86 16 17 N -0.60 -7.99 3.06 -163.01 -0.50 -8.49 16 18 C 0.52 7.22 7.71 -10.99 -0.08 7.14 16 19 O -0.53 -9.34 15.48 5.56 0.09 -9.25 16 20 C 0.11 1.22 6.09 -5.20 -0.03 1.19 16 21 N -0.12 -1.64 3.49 -11.72 -0.04 -1.68 16 22 N -0.30 -3.98 12.13 29.34 0.36 -3.62 16 23 C 0.14 1.62 13.26 -91.59 -1.21 0.41 16 24 N -0.29 -4.05 12.50 29.33 0.37 -3.69 16 25 N -0.05 -0.74 13.25 60.35 0.80 0.06 16 26 H 0.06 0.92 6.89 -51.93 -0.36 0.56 16 27 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 29 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 30 H 0.08 1.13 7.70 -51.92 -0.40 0.73 16 31 H 0.39 9.02 7.71 -40.82 -0.31 8.70 16 32 H 0.26 7.03 8.31 -40.82 -0.34 6.70 16 33 H 0.07 0.91 7.48 -51.93 -0.39 0.52 16 34 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 35 H 0.15 1.23 8.14 -51.93 -0.42 0.81 16 36 H 0.15 1.23 7.85 -51.93 -0.41 0.82 16 37 H 0.24 1.48 8.06 -52.49 -0.42 1.06 16 LS Contribution 319.21 15.07 4.81 4.81 Total: -1.00 -31.88 319.21 -5.37 -37.25 By element: Atomic # 1 Polarization: 10.98 SS G_CDS: -4.80 Total: 6.19 kcal Atomic # 6 Polarization: 5.36 SS G_CDS: -1.88 Total: 3.48 kcal Atomic # 7 Polarization: -59.51 SS G_CDS: 1.44 Total: -58.08 kcal Atomic # 8 Polarization: -9.34 SS G_CDS: 0.09 Total: -9.25 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -31.88 -5.37 -37.25 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000988827205.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.379 kcal (2) G-P(sol) polarization free energy of solvation -31.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 123.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.248 kcal (6) G-S(sol) free energy of system = (1) + (5) 118.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds