Wall clock time and date at job start Tue Mar 31 2020 02:12:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09007 * 109.99586 * 2 1 4 4 C 1.54329 * 109.99319 * 238.96337 * 2 1 3 5 5 C 1.55159 * 103.02245 * 218.66600 * 4 2 1 6 6 H 1.09005 * 111.03709 * 277.21700 * 5 4 2 7 7 N 1.46500 * 111.00599 * 153.37817 * 5 4 2 8 8 C 1.36941 * 119.99729 * 161.35219 * 7 5 4 9 9 H 1.08001 * 120.00191 * 359.97438 * 8 7 5 10 10 C 1.38810 * 119.99757 * 180.02562 * 8 7 5 11 11 N 1.31620 * 120.00140 * 359.97438 * 10 8 7 12 12 Si 1.86801 * 119.99918 * 179.97438 * 10 8 7 13 13 H 1.48501 * 109.46984 * 59.99412 * 12 10 8 14 14 H 1.48499 * 109.47086 * 179.97438 * 12 10 8 15 15 H 1.48495 * 109.47076 * 299.99632 * 12 10 8 16 16 C 1.54910 * 101.58155 * 35.30330 * 5 4 2 17 17 N 1.47019 * 109.88341 * 121.09391 * 2 1 3 18 18 C 1.34784 * 125.64840 * 298.39513 * 17 2 1 19 19 O 1.21283 * 119.99667 * 359.71499 * 18 17 2 20 20 C 1.50693 * 119.99987 * 179.71833 * 18 17 2 21 21 N 1.46497 * 109.47119 * 180.02562 * 20 18 17 22 22 N 1.28889 * 125.45037 * 89.99674 * 21 20 18 23 23 C 1.31042 * 107.91546 * 179.97438 * 22 21 20 24 24 N 1.33310 * 106.90432 * 0.02562 * 23 22 21 25 25 N 1.28777 * 125.45063 * 269.69181 * 21 20 18 26 26 H 1.09002 * 109.46871 * 300.36166 * 1 2 3 27 27 H 1.08998 * 109.47010 * 60.35868 * 1 2 3 28 28 H 1.08994 * 109.46849 * 180.35839 * 1 2 3 29 29 H 1.08997 * 110.85254 * 100.19594 * 4 2 1 30 30 H 1.09009 * 110.66844 * 337.04199 * 4 2 1 31 31 H 0.96999 * 120.00257 * 341.34867 * 7 5 4 32 32 H 0.96995 * 120.00080 * 180.02562 * 11 10 8 33 33 H 1.09002 * 110.36832 * 204.15743 * 16 5 4 34 34 H 1.08998 * 110.46009 * 81.87490 * 16 5 4 35 35 H 1.09002 * 109.47106 * 299.99491 * 20 18 17 36 36 H 1.09003 * 109.47551 * 59.99749 * 20 18 17 37 37 H 1.08001 * 126.54780 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0244 0.0000 4 6 2.0577 -0.7477 -1.2427 5 6 3.2864 -1.5183 -0.6914 6 1 4.1675 -0.8774 -0.6579 7 7 3.5476 -2.7242 -1.4812 8 6 4.7735 -3.3313 -1.4189 9 1 5.5479 -2.9208 -0.7879 10 6 5.0212 -4.4736 -2.1677 11 7 4.0776 -4.9735 -2.9371 12 14 6.6937 -5.3013 -2.0832 13 1 6.9679 -5.7218 -0.6857 14 1 6.7014 -6.4932 -2.9690 15 1 7.7412 -4.3471 -2.5275 16 6 2.8100 -1.8825 0.7369 17 7 2.0300 -0.7140 1.1839 18 6 1.8074 -0.3619 2.4658 19 8 1.1475 0.6239 2.7179 20 6 2.3785 -1.1932 3.5855 21 7 1.9974 -0.6064 4.8726 22 7 0.9317 -0.8930 5.5386 23 6 0.9346 -0.1726 6.6332 24 7 2.0443 0.5657 6.6085 25 7 2.6762 0.2742 5.5223 26 1 -0.3633 0.5195 0.8868 27 1 -0.3633 0.5082 -0.8932 28 1 -0.3633 -1.0276 0.0064 29 1 2.3598 -0.0450 -2.0191 30 1 1.3067 -1.4406 -1.6225 31 1 2.8522 -3.0927 -2.0483 32 1 4.2506 -5.7719 -3.4601 33 1 3.6656 -2.0411 1.3933 34 1 2.1807 -2.7721 0.7134 35 1 1.9879 -2.2087 3.5198 36 1 3.4652 -1.2158 3.5036 37 1 0.1812 -0.1757 7.4071 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000988827205.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:12:37 Heat of formation + Delta-G solvation = 96.073032 kcal Electronic energy + Delta-G solvation = -21794.882593 eV Core-core repulsion = 18417.445308 eV Total energy + Delta-G solvation = -3377.437284 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.139 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -45.37307 -41.41238 -38.99443 -36.11672 -35.93140 -34.15942 -33.39298 -33.00431 -30.27818 -29.86680 -26.77750 -25.84969 -24.99246 -24.66804 -22.90195 -21.79954 -20.42079 -19.30017 -18.94430 -18.59280 -17.71425 -17.30325 -16.80401 -16.52621 -15.97849 -15.62096 -15.32441 -14.94955 -14.83045 -14.45199 -14.25171 -14.03361 -13.62586 -13.45120 -13.08346 -13.00342 -12.84385 -12.78989 -12.35761 -12.27562 -12.11796 -12.05927 -12.02949 -11.74316 -11.69441 -11.49966 -11.05597 -10.88610 -9.82350 -9.03138 -7.91815 -5.21437 0.07834 0.74815 1.24427 1.26550 1.54408 1.55195 1.60910 1.82855 2.59247 3.05648 3.13701 3.39955 3.45853 3.68917 3.79239 3.85133 3.94095 3.98288 4.15090 4.30795 4.44649 4.50894 4.66298 4.69988 4.75073 4.78615 4.85114 5.00363 5.05158 5.12030 5.20646 5.32394 5.39685 5.59026 6.28503 6.30951 6.80198 7.29181 7.37827 8.09310 8.32252 9.30745 Molecular weight = 280.14amu Principal moments of inertia in cm(-1) A = 0.020760 B = 0.004059 C = 0.003541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1348.433484 B = 6896.045578 C = 7904.781230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.140 3.860 3 H 0.077 0.923 4 C -0.124 4.124 5 C 0.165 3.835 6 H 0.067 0.933 7 N -0.723 5.723 8 C -0.242 4.242 9 H 0.083 0.917 10 C -0.067 4.067 11 N -0.966 5.966 12 Si 0.965 3.035 13 H -0.275 1.275 14 H -0.302 1.302 15 H -0.281 1.281 16 C 0.076 3.924 17 N -0.595 5.595 18 C 0.520 3.480 19 O -0.571 6.571 20 C 0.109 3.891 21 N -0.123 5.123 22 N -0.318 5.318 23 C 0.149 3.851 24 N -0.311 5.311 25 N -0.072 5.072 26 H 0.047 0.953 27 H 0.083 0.917 28 H 0.056 0.944 29 H 0.092 0.908 30 H 0.078 0.922 31 H 0.377 0.623 32 H 0.250 0.750 33 H 0.092 0.908 34 H 0.073 0.927 35 H 0.173 0.827 36 H 0.175 0.825 37 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.824 7.039 11.944 15.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.037 3.963 3 H 0.095 0.905 4 C -0.163 4.163 5 C 0.054 3.946 6 H 0.085 0.915 7 N -0.362 5.362 8 C -0.373 4.373 9 H 0.101 0.899 10 C -0.260 4.260 11 N -0.616 5.616 12 Si 0.795 3.205 13 H -0.201 1.201 14 H -0.229 1.229 15 H -0.207 1.207 16 C -0.049 4.049 17 N -0.328 5.328 18 C 0.307 3.693 19 O -0.451 6.451 20 C -0.014 4.014 21 N -0.036 5.036 22 N -0.168 5.168 23 C -0.153 4.153 24 N -0.181 5.181 25 N -0.066 5.066 26 H 0.066 0.934 27 H 0.102 0.898 28 H 0.075 0.925 29 H 0.110 0.890 30 H 0.096 0.904 31 H 0.210 0.790 32 H 0.059 0.941 33 H 0.111 0.889 34 H 0.091 0.909 35 H 0.190 0.810 36 H 0.192 0.808 37 H 0.293 0.707 Dipole moment (debyes) X Y Z Total from point charges -5.430 7.681 11.832 15.116 hybrid contribution 0.017 -0.923 -0.224 0.950 sum -5.413 6.759 11.608 14.482 Atomic orbital electron populations 1.22053 0.94213 1.02242 1.02637 1.21611 0.94871 0.96130 0.83649 0.90502 1.22918 0.97730 0.99514 0.96115 1.21444 0.95933 0.87968 0.89249 0.91516 1.42433 1.13211 1.28803 1.51727 1.19595 0.91285 1.05559 1.20908 0.89870 1.25458 1.00755 0.99804 0.99970 1.69784 1.34306 1.24631 1.32925 0.85340 0.80292 0.77501 0.77365 1.20142 1.22920 1.20704 1.23430 0.95191 0.87088 0.99191 1.48507 1.51508 1.28772 1.04051 1.20156 0.80733 0.85189 0.83270 1.90758 1.41828 1.28929 1.83611 1.22349 1.06147 0.98958 0.73921 1.49730 1.11487 1.25196 1.17152 1.74711 1.08250 1.26122 1.07709 1.28211 0.98273 0.91823 0.97001 1.75840 1.07639 1.22536 1.12118 1.78952 1.20888 1.05293 1.01471 0.93412 0.89792 0.92493 0.88985 0.90383 0.78989 0.94087 0.88936 0.90873 0.81012 0.80760 0.70703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.62 9.11 71.98 0.66 -2.96 16 2 C 0.14 3.45 3.46 45.34 0.16 3.61 16 3 H 0.08 1.91 8.14 -2.38 -0.02 1.89 16 4 C -0.12 -3.20 6.11 31.79 0.19 -3.01 16 5 C 0.16 5.10 3.69 46.38 0.17 5.28 16 6 H 0.07 2.10 8.13 -2.38 -0.02 2.08 16 7 N -0.72 -30.47 5.28 -316.36 -1.67 -32.14 16 8 C -0.24 -11.60 9.98 84.03 0.84 -10.76 16 9 H 0.08 3.74 7.83 -2.91 -0.02 3.72 16 10 C -0.07 -3.47 5.50 84.86 0.47 -3.00 16 11 N -0.97 -54.29 13.06 21.65 0.28 -54.01 16 12 Si 0.97 42.13 29.55 68.60 2.03 44.15 16 13 H -0.28 -11.46 7.11 99.48 0.71 -10.76 16 14 H -0.30 -13.69 7.11 99.48 0.71 -12.99 16 15 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 16 C 0.08 1.94 6.38 86.86 0.55 2.49 16 17 N -0.60 -14.70 3.06 -788.03 -2.41 -17.11 16 18 C 0.52 13.57 7.71 87.65 0.68 14.25 16 19 O -0.57 -19.50 15.48 -3.04 -0.05 -19.55 16 20 C 0.11 2.12 6.09 85.63 0.52 2.64 16 21 N -0.12 -3.10 3.49 -191.00 -0.67 -3.77 16 22 N -0.32 -7.82 12.13 -61.10 -0.74 -8.56 16 23 C 0.15 3.12 13.26 180.69 2.40 5.52 16 24 N -0.31 -8.33 12.50 -61.11 -0.76 -9.10 16 25 N -0.07 -2.05 13.25 37.02 0.49 -1.56 16 26 H 0.05 1.31 6.89 -2.39 -0.02 1.29 16 27 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 28 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 29 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 30 H 0.08 2.09 7.70 -2.38 -0.02 2.07 16 31 H 0.38 17.48 7.71 -92.71 -0.71 16.77 16 32 H 0.25 13.89 8.31 -92.71 -0.77 13.12 16 33 H 0.09 2.01 7.48 -2.39 -0.02 1.99 16 34 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 35 H 0.17 2.40 8.14 -2.39 -0.02 2.38 16 36 H 0.18 2.38 7.85 -2.39 -0.02 2.36 16 37 H 0.28 2.66 8.06 -2.91 -0.02 2.63 16 Total: -1.00 -68.66 319.21 3.51 -65.14 By element: Atomic # 1 Polarization: 22.07 SS G_CDS: 0.38 Total: 22.45 kcal Atomic # 6 Polarization: 7.42 SS G_CDS: 6.63 Total: 14.05 kcal Atomic # 7 Polarization: -120.77 SS G_CDS: -5.48 Total: -126.25 kcal Atomic # 8 Polarization: -19.50 SS G_CDS: -0.05 Total: -19.55 kcal Atomic # 14 Polarization: 42.13 SS G_CDS: 2.03 Total: 44.15 kcal Total: -68.66 3.51 -65.14 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000988827205.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.217 kcal (2) G-P(sol) polarization free energy of solvation -68.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.144 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds