Wall clock time and date at job start Tue Mar 31 2020 02:12:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 110.32590 * 2 1 4 4 C 1.54907 * 110.46524 * 237.69763 * 2 1 3 5 5 C 1.55150 * 101.58323 * 204.10417 * 4 2 1 6 6 H 1.08994 * 110.87176 * 277.06670 * 5 4 2 7 7 N 1.46504 * 110.71845 * 153.86249 * 5 4 2 8 8 C 1.36943 * 119.99781 * 160.02530 * 7 5 4 9 9 H 1.08002 * 119.99788 * 359.97438 * 8 7 5 10 10 C 1.38811 * 119.99622 * 180.27904 * 8 7 5 11 11 N 1.31622 * 119.99400 * 179.72313 * 10 8 7 12 12 Si 1.86800 * 120.00144 * 359.72086 * 10 8 7 13 13 H 1.48506 * 109.46719 * 90.00417 * 12 10 8 14 14 H 1.48501 * 109.46793 * 210.00071 * 12 10 8 15 15 H 1.48489 * 109.47333 * 330.00315 * 12 10 8 16 16 C 1.54323 * 102.94470 * 35.50308 * 5 4 2 17 17 N 1.47028 * 107.26786 * 337.80611 * 16 5 4 18 18 C 1.34777 * 125.64452 * 178.97303 * 17 16 5 19 19 O 1.21544 * 119.99892 * 179.97438 * 18 17 16 20 20 C 1.48001 * 120.00236 * 359.97438 * 18 17 16 21 21 N 1.34185 * 126.70067 * 359.68310 * 20 18 17 22 22 N 1.28987 * 107.25437 * 179.89357 * 21 20 18 23 23 N 1.28719 * 108.98585 * 0.37566 * 22 21 20 24 24 C 1.46495 * 125.32071 * 179.79585 * 23 22 21 25 25 N 1.28863 * 109.36044 * 359.75825 * 23 22 21 26 26 H 1.08997 * 109.47228 * 299.21610 * 1 2 3 27 27 H 1.08994 * 109.47063 * 59.22499 * 1 2 3 28 28 H 1.09004 * 109.46590 * 179.21991 * 1 2 3 29 29 H 1.09000 * 111.00406 * 86.02891 * 4 2 1 30 30 H 1.09002 * 111.00095 * 322.17747 * 4 2 1 31 31 H 0.97000 * 120.00410 * 340.02855 * 7 5 4 32 32 H 0.97009 * 119.99492 * 179.97438 * 11 10 8 33 33 H 1.09000 * 109.88673 * 97.22180 * 16 5 4 34 34 H 1.08994 * 109.88619 * 218.23434 * 16 5 4 35 35 H 1.08998 * 109.47559 * 269.96146 * 24 23 22 36 36 H 1.09008 * 109.46964 * 29.95570 * 24 23 22 37 37 H 1.08994 * 109.47380 * 149.95670 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9086 1.0221 0.0000 4 6 2.0716 -0.7756 -1.2267 5 6 3.4803 -1.1970 -0.7317 6 1 4.1982 -0.3885 -0.8693 7 7 3.9301 -2.4098 -1.4196 8 6 5.2625 -2.7241 -1.4523 9 1 5.9818 -2.0778 -0.9714 10 6 5.6892 -3.8702 -2.1091 11 7 6.9705 -4.1694 -2.1452 12 14 4.4451 -4.9877 -2.9415 13 1 4.2528 -4.5529 -4.3484 14 1 4.9436 -6.3864 -2.9193 15 1 3.1503 -4.9121 -2.2186 16 6 3.2509 -1.4738 0.7691 17 7 2.0430 -0.7371 1.1691 18 6 1.4959 -0.7355 2.4009 19 8 0.4918 -0.0862 2.6189 20 6 2.1178 -1.5242 3.4879 21 7 3.2167 -2.2888 3.3964 22 7 3.4249 -2.8005 4.5619 23 7 2.5052 -2.3967 5.3669 24 6 2.3956 -2.7649 6.7806 25 7 1.6965 -1.6173 4.7352 26 1 -0.3633 0.5016 0.8969 27 1 -0.3633 0.5258 -0.8829 28 1 -0.3633 -1.0276 -0.0140 29 1 2.1422 -0.1263 -2.0994 30 1 1.4551 -1.6488 -1.4401 31 1 3.2841 -2.9901 -1.8519 32 1 7.2687 -4.9706 -2.6038 33 1 3.1043 -2.5417 0.9309 34 1 4.1080 -1.1259 1.3455 35 1 1.7886 -3.6652 6.8756 36 1 3.3901 -2.9529 7.1853 37 1 1.9267 -1.9506 7.3329 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989304929.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:12:16 Heat of formation + Delta-G solvation = 129.984571 kcal Electronic energy + Delta-G solvation = -22127.688794 eV Core-core repulsion = 18751.722024 eV Total energy + Delta-G solvation = -3375.966769 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.139 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -44.44825 -40.04017 -37.51160 -35.35816 -34.32977 -33.24274 -31.85993 -31.48980 -29.05270 -28.78421 -25.73793 -25.10451 -23.60956 -23.15080 -21.75534 -20.38699 -19.64760 -17.81153 -17.69906 -17.54843 -16.58081 -16.45247 -15.42719 -14.68859 -14.28419 -14.13686 -13.90092 -13.71933 -13.49873 -13.37368 -13.28889 -12.60192 -12.30205 -12.20043 -12.08798 -11.92543 -11.54331 -11.27674 -11.16029 -11.03474 -10.77091 -10.68854 -10.45070 -10.43279 -10.09841 -9.85737 -9.60882 -8.99023 -8.47575 -7.35877 -5.79475 -3.17158 0.90937 1.47759 1.63709 2.76126 3.14044 3.36833 3.39340 3.44858 3.90810 3.99444 4.51616 4.56858 4.62805 4.81931 4.88480 4.99587 5.06539 5.21024 5.34818 5.50346 5.55387 5.58893 5.71617 5.79879 5.86056 5.93050 6.03998 6.20717 6.27999 6.35857 6.53242 6.58702 6.81886 7.52252 7.93590 7.97740 8.21361 8.39049 9.15597 9.87698 10.05360 11.38325 Molecular weight = 280.14amu Principal moments of inertia in cm(-1) A = 0.015690 B = 0.005536 C = 0.004383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1784.136245 B = 5057.031435 C = 6386.676986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.141 3.859 3 H 0.082 0.918 4 C -0.140 4.140 5 C 0.177 3.823 6 H 0.076 0.924 7 N -0.736 5.736 8 C -0.250 4.250 9 H 0.094 0.906 10 C 0.010 3.990 11 N -0.930 5.930 12 Si 0.882 3.118 13 H -0.283 1.283 14 H -0.291 1.291 15 H -0.277 1.277 16 C 0.076 3.924 17 N -0.588 5.588 18 C 0.628 3.372 19 O -0.521 6.521 20 C 0.133 3.867 21 N -0.235 5.235 22 N -0.057 5.057 23 N -0.140 5.140 24 C 0.093 3.907 25 N -0.254 5.254 26 H 0.085 0.915 27 H 0.063 0.937 28 H 0.054 0.946 29 H 0.087 0.913 30 H 0.076 0.924 31 H 0.364 0.636 32 H 0.260 0.740 33 H 0.082 0.918 34 H 0.073 0.927 35 H 0.104 0.896 36 H 0.116 0.884 37 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.850 5.765 13.821 19.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.038 3.962 3 H 0.100 0.900 4 C -0.179 4.179 5 C 0.065 3.935 6 H 0.094 0.906 7 N -0.378 5.378 8 C -0.379 4.379 9 H 0.111 0.889 10 C -0.186 4.186 11 N -0.576 5.576 12 Si 0.712 3.288 13 H -0.210 1.210 14 H -0.217 1.217 15 H -0.203 1.203 16 C -0.049 4.049 17 N -0.321 5.321 18 C 0.410 3.590 19 O -0.395 6.395 20 C -0.151 4.151 21 N -0.109 5.109 22 N -0.050 5.050 23 N -0.052 5.052 24 C -0.046 4.046 25 N -0.109 5.109 26 H 0.103 0.897 27 H 0.082 0.918 28 H 0.073 0.927 29 H 0.105 0.895 30 H 0.095 0.905 31 H 0.197 0.803 32 H 0.070 0.930 33 H 0.101 0.899 34 H 0.091 0.909 35 H 0.122 0.878 36 H 0.134 0.866 37 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -11.725 5.693 14.322 19.365 hybrid contribution -0.942 -0.890 -0.533 1.401 sum -12.667 4.803 13.789 19.330 Atomic orbital electron populations 1.22204 0.93978 1.02744 1.03469 1.21974 0.95003 0.95563 0.83645 0.89983 1.23207 0.97746 1.00487 0.96456 1.21187 0.93129 0.90620 0.88558 0.90588 1.42721 1.05930 1.24849 1.64255 1.19080 0.82260 1.06789 1.29790 0.88872 1.24658 0.95570 0.98029 1.00353 1.69704 1.12839 1.27409 1.47697 0.86592 0.81287 0.81015 0.79880 1.20982 1.21703 1.20309 1.23447 0.84833 0.97300 0.99290 1.48355 1.28649 1.47481 1.07635 1.15675 0.82955 0.80510 0.79830 1.90756 1.24233 1.43171 1.81344 1.25290 0.94848 1.02196 0.92734 1.76446 1.13701 1.08636 1.12159 1.79046 1.12413 1.18153 0.95435 1.50277 1.14434 1.27377 1.13155 1.22503 1.06665 1.03998 0.71460 1.75025 1.17839 1.11658 1.06363 0.89668 0.91826 0.92658 0.89482 0.90545 0.80264 0.92980 0.89941 0.90906 0.87786 0.86601 0.86956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.15 8.71 37.16 0.32 -1.82 16 2 C 0.14 1.95 3.76 -66.42 -0.25 1.70 16 3 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 4 C -0.14 -2.02 6.11 -24.59 -0.15 -2.17 16 5 C 0.18 3.19 3.59 -66.10 -0.24 2.96 16 6 H 0.08 1.37 8.12 -51.93 -0.42 0.95 16 7 N -0.74 -16.58 4.98 -51.65 -0.26 -16.83 16 8 C -0.25 -6.78 10.46 -15.06 -0.16 -6.94 16 9 H 0.09 2.71 8.06 -52.49 -0.42 2.29 16 10 C 0.01 0.29 5.50 -17.43 -0.10 0.20 16 11 N -0.93 -28.68 13.97 55.49 0.78 -27.90 16 12 Si 0.88 21.66 27.73 -169.99 -4.71 16.95 16 13 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 14 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 15 H -0.28 -6.43 6.52 56.52 0.37 -6.06 16 16 C 0.08 1.36 5.29 -3.06 -0.02 1.35 16 17 N -0.59 -9.52 3.24 -164.09 -0.53 -10.05 16 18 C 0.63 10.78 7.65 -12.26 -0.09 10.68 16 19 O -0.52 -9.50 14.75 5.33 0.08 -9.42 16 20 C 0.13 2.24 7.97 -156.24 -1.24 0.99 16 21 N -0.23 -4.08 10.09 32.10 0.32 -3.75 16 22 N -0.06 -0.85 13.23 60.35 0.80 -0.05 16 23 N -0.14 -1.68 4.39 -16.65 -0.07 -1.76 16 24 C 0.09 0.46 11.62 59.84 0.70 1.16 16 25 N -0.25 -3.79 12.16 32.11 0.39 -3.39 16 26 H 0.08 1.23 5.88 -51.93 -0.31 0.92 16 27 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 30 H 0.08 1.13 7.92 -51.93 -0.41 0.71 16 31 H 0.36 8.10 5.58 -40.82 -0.23 7.87 16 32 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 33 H 0.08 1.65 7.54 -51.93 -0.39 1.26 16 34 H 0.07 1.34 7.78 -51.93 -0.40 0.93 16 35 H 0.10 0.32 8.14 -51.93 -0.42 -0.10 16 36 H 0.12 0.33 8.14 -51.92 -0.42 -0.09 16 37 H 0.11 0.35 8.14 -51.93 -0.42 -0.08 16 LS Contribution 312.14 15.07 4.70 4.70 Total: -1.00 -34.55 312.14 -4.44 -39.00 By element: Atomic # 1 Polarization: 9.12 SS G_CDS: -4.71 Total: 4.40 kcal Atomic # 6 Polarization: 9.33 SS G_CDS: -1.23 Total: 8.10 kcal Atomic # 7 Polarization: -65.17 SS G_CDS: 1.43 Total: -63.74 kcal Atomic # 8 Polarization: -9.50 SS G_CDS: 0.08 Total: -9.42 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -4.71 Total: 16.95 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -34.55 -4.44 -39.00 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989304929.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 168.983 kcal (2) G-P(sol) polarization free energy of solvation -34.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 134.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.999 kcal (6) G-S(sol) free energy of system = (1) + (5) 129.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds