Wall clock time and date at job start Tue Mar 31 2020 02:12:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 110.32590 * 2 1 4 4 C 1.54907 * 110.46524 * 237.69763 * 2 1 3 5 5 C 1.55150 * 101.58323 * 204.10417 * 4 2 1 6 6 H 1.08994 * 110.87176 * 277.06670 * 5 4 2 7 7 N 1.46504 * 110.71845 * 153.86249 * 5 4 2 8 8 C 1.36943 * 119.99781 * 160.02530 * 7 5 4 9 9 H 1.08002 * 119.99788 * 359.97438 * 8 7 5 10 10 C 1.38811 * 119.99622 * 180.27904 * 8 7 5 11 11 N 1.31622 * 119.99400 * 179.72313 * 10 8 7 12 12 Si 1.86800 * 120.00144 * 359.72086 * 10 8 7 13 13 H 1.48506 * 109.46719 * 90.00417 * 12 10 8 14 14 H 1.48501 * 109.46793 * 210.00071 * 12 10 8 15 15 H 1.48489 * 109.47333 * 330.00315 * 12 10 8 16 16 C 1.54323 * 102.94470 * 35.50308 * 5 4 2 17 17 N 1.47028 * 107.26786 * 337.80611 * 16 5 4 18 18 C 1.34777 * 125.64452 * 178.97303 * 17 16 5 19 19 O 1.21544 * 119.99892 * 179.97438 * 18 17 16 20 20 C 1.48001 * 120.00236 * 359.97438 * 18 17 16 21 21 N 1.34185 * 126.70067 * 359.68310 * 20 18 17 22 22 N 1.28987 * 107.25437 * 179.89357 * 21 20 18 23 23 N 1.28719 * 108.98585 * 0.37566 * 22 21 20 24 24 C 1.46495 * 125.32071 * 179.79585 * 23 22 21 25 25 N 1.28863 * 109.36044 * 359.75825 * 23 22 21 26 26 H 1.08997 * 109.47228 * 299.21610 * 1 2 3 27 27 H 1.08994 * 109.47063 * 59.22499 * 1 2 3 28 28 H 1.09004 * 109.46590 * 179.21991 * 1 2 3 29 29 H 1.09000 * 111.00406 * 86.02891 * 4 2 1 30 30 H 1.09002 * 111.00095 * 322.17747 * 4 2 1 31 31 H 0.97000 * 120.00410 * 340.02855 * 7 5 4 32 32 H 0.97009 * 119.99492 * 179.97438 * 11 10 8 33 33 H 1.09000 * 109.88673 * 97.22180 * 16 5 4 34 34 H 1.08994 * 109.88619 * 218.23434 * 16 5 4 35 35 H 1.08998 * 109.47559 * 269.96146 * 24 23 22 36 36 H 1.09008 * 109.46964 * 29.95570 * 24 23 22 37 37 H 1.08994 * 109.47380 * 149.95670 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9086 1.0221 0.0000 4 6 2.0716 -0.7756 -1.2267 5 6 3.4803 -1.1970 -0.7317 6 1 4.1982 -0.3885 -0.8693 7 7 3.9301 -2.4098 -1.4196 8 6 5.2625 -2.7241 -1.4523 9 1 5.9818 -2.0778 -0.9714 10 6 5.6892 -3.8702 -2.1091 11 7 6.9705 -4.1694 -2.1452 12 14 4.4451 -4.9877 -2.9415 13 1 4.2528 -4.5529 -4.3484 14 1 4.9436 -6.3864 -2.9193 15 1 3.1503 -4.9121 -2.2186 16 6 3.2509 -1.4738 0.7691 17 7 2.0430 -0.7371 1.1691 18 6 1.4959 -0.7355 2.4009 19 8 0.4918 -0.0862 2.6189 20 6 2.1178 -1.5242 3.4879 21 7 3.2167 -2.2888 3.3964 22 7 3.4249 -2.8005 4.5619 23 7 2.5052 -2.3967 5.3669 24 6 2.3956 -2.7649 6.7806 25 7 1.6965 -1.6173 4.7352 26 1 -0.3633 0.5016 0.8969 27 1 -0.3633 0.5258 -0.8829 28 1 -0.3633 -1.0276 -0.0140 29 1 2.1422 -0.1263 -2.0994 30 1 1.4551 -1.6488 -1.4401 31 1 3.2841 -2.9901 -1.8519 32 1 7.2687 -4.9706 -2.6038 33 1 3.1043 -2.5417 0.9309 34 1 4.1080 -1.1259 1.3455 35 1 1.7886 -3.6652 6.8756 36 1 3.3901 -2.9529 7.1853 37 1 1.9267 -1.9506 7.3329 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989304929.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:12:16 Heat of formation + Delta-G solvation = 103.562150 kcal Electronic energy + Delta-G solvation = -22128.834556 eV Core-core repulsion = 18751.722024 eV Total energy + Delta-G solvation = -3377.112532 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.139 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -45.56651 -41.34689 -38.90269 -36.37436 -36.08685 -34.39187 -33.54238 -32.91490 -30.58132 -29.67029 -26.99525 -26.34494 -25.41267 -24.20878 -23.05812 -21.89475 -20.87115 -19.67020 -18.80053 -18.71967 -17.78827 -17.66727 -16.89471 -16.38182 -15.74198 -15.46904 -15.19999 -14.93286 -14.62848 -14.43229 -14.32485 -14.13110 -13.74428 -13.50161 -13.21392 -13.10599 -12.99526 -12.87212 -12.46629 -12.26465 -12.23907 -12.12956 -11.99050 -11.79066 -11.61383 -11.48809 -11.14719 -10.94681 -9.80495 -9.35103 -7.98357 -5.33504 -0.21498 0.24488 0.79635 1.41584 1.44574 1.50852 1.60497 1.84147 2.51834 2.64385 2.99619 3.30884 3.50484 3.70359 3.80236 3.95144 4.03143 4.15214 4.20571 4.31010 4.43219 4.45790 4.50608 4.59499 4.75291 4.83357 4.93793 4.96644 5.11634 5.14622 5.21811 5.32349 5.52254 5.81405 6.17748 6.25739 6.70192 7.02752 7.10326 7.83871 8.02590 9.22804 Molecular weight = 280.14amu Principal moments of inertia in cm(-1) A = 0.015690 B = 0.005536 C = 0.004383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1784.136245 B = 5057.031435 C = 6386.676986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.137 3.863 3 H 0.101 0.899 4 C -0.125 4.125 5 C 0.168 3.832 6 H 0.076 0.924 7 N -0.738 5.738 8 C -0.230 4.230 9 H 0.062 0.938 10 C -0.058 4.058 11 N -0.982 5.982 12 Si 0.950 3.050 13 H -0.274 1.274 14 H -0.301 1.301 15 H -0.254 1.254 16 C 0.094 3.906 17 N -0.586 5.586 18 C 0.627 3.373 19 O -0.534 6.534 20 C 0.113 3.887 21 N -0.268 5.268 22 N -0.070 5.070 23 N -0.114 5.114 24 C 0.072 3.928 25 N -0.258 5.258 26 H 0.070 0.930 27 H 0.093 0.907 28 H 0.046 0.954 29 H 0.114 0.886 30 H 0.078 0.922 31 H 0.368 0.632 32 H 0.257 0.743 33 H 0.060 0.940 34 H 0.060 0.940 35 H 0.130 0.870 36 H 0.140 0.860 37 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.179 6.168 14.249 21.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.036 3.964 3 H 0.118 0.882 4 C -0.163 4.163 5 C 0.058 3.942 6 H 0.094 0.906 7 N -0.380 5.380 8 C -0.361 4.361 9 H 0.080 0.920 10 C -0.250 4.250 11 N -0.632 5.632 12 Si 0.778 3.222 13 H -0.200 1.200 14 H -0.228 1.228 15 H -0.179 1.179 16 C -0.032 4.032 17 N -0.319 5.319 18 C 0.410 3.590 19 O -0.410 6.410 20 C -0.171 4.171 21 N -0.142 5.142 22 N -0.063 5.063 23 N -0.030 5.030 24 C -0.064 4.064 25 N -0.114 5.114 26 H 0.088 0.912 27 H 0.112 0.888 28 H 0.065 0.935 29 H 0.133 0.867 30 H 0.096 0.904 31 H 0.202 0.798 32 H 0.066 0.934 33 H 0.078 0.922 34 H 0.079 0.921 35 H 0.148 0.852 36 H 0.159 0.841 37 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -14.099 6.133 14.771 21.321 hybrid contribution -0.214 -0.952 -0.424 1.063 sum -14.313 5.181 14.348 20.918 Atomic orbital electron populations 1.22124 0.92827 1.02412 1.04152 1.22227 0.95885 0.96057 0.82265 0.88156 1.23154 0.94570 1.01079 0.97522 1.21388 0.95534 0.88891 0.88377 0.90560 1.42666 1.04133 1.26370 1.64842 1.19033 0.83863 1.05611 1.27573 0.92009 1.25437 0.97403 1.00075 1.02094 1.69885 1.15275 1.28250 1.49798 0.85486 0.79534 0.77997 0.79204 1.19987 1.22790 1.17922 1.23007 0.85242 0.96103 0.98843 1.48366 1.28019 1.47348 1.08170 1.15761 0.82785 0.80364 0.80093 1.90744 1.24735 1.43853 1.81639 1.25279 0.95320 1.03018 0.93449 1.76397 1.14531 1.09668 1.13591 1.78950 1.13337 1.18629 0.95404 1.50890 1.12505 1.25013 1.14564 1.23273 1.09123 1.05996 0.68030 1.74987 1.18356 1.12247 1.05850 0.91159 0.88841 0.93523 0.86726 0.90375 0.79781 0.93425 0.92174 0.92147 0.85214 0.84142 0.84603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.65 8.71 71.98 0.63 -3.03 16 2 C 0.14 3.47 3.76 45.47 0.17 3.64 16 3 H 0.10 2.23 8.14 -2.39 -0.02 2.21 16 4 C -0.12 -3.24 6.11 31.98 0.20 -3.04 16 5 C 0.17 5.90 3.59 46.18 0.17 6.07 16 6 H 0.08 2.70 8.12 -2.39 -0.02 2.68 16 7 N -0.74 -32.61 4.98 -317.33 -1.58 -34.19 16 8 C -0.23 -12.66 10.46 84.03 0.88 -11.78 16 9 H 0.06 3.73 8.06 -2.91 -0.02 3.71 16 10 C -0.06 -3.38 5.50 84.86 0.47 -2.91 16 11 N -0.98 -62.29 13.97 21.65 0.30 -61.99 16 12 Si 0.95 44.69 27.73 68.60 1.90 46.59 16 13 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 14 H -0.30 -14.58 7.11 99.48 0.71 -13.87 16 15 H -0.25 -10.87 6.52 99.48 0.65 -10.22 16 16 C 0.09 3.35 5.29 86.73 0.46 3.81 16 17 N -0.59 -18.52 3.24 -791.34 -2.57 -21.08 16 18 C 0.63 21.28 7.65 86.83 0.66 21.95 16 19 O -0.53 -19.10 14.75 -3.85 -0.06 -19.15 16 20 C 0.11 3.78 7.97 137.15 1.09 4.88 16 21 N -0.27 -9.43 10.09 -52.37 -0.53 -9.96 16 22 N -0.07 -2.07 13.23 37.02 0.49 -1.58 16 23 N -0.11 -2.59 4.39 -206.59 -0.91 -3.50 16 24 C 0.07 0.52 11.62 127.77 1.49 2.00 16 25 N -0.26 -7.45 12.16 -52.32 -0.64 -8.09 16 26 H 0.07 1.89 5.88 -2.39 -0.01 1.88 16 27 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 28 H 0.05 1.16 8.14 -2.38 -0.02 1.14 16 29 H 0.11 2.40 8.14 -2.39 -0.02 2.38 16 30 H 0.08 2.05 7.92 -2.39 -0.02 2.03 16 31 H 0.37 15.64 5.58 -92.71 -0.52 15.12 16 32 H 0.26 15.59 8.31 -92.70 -0.77 14.82 16 33 H 0.06 2.44 7.54 -2.39 -0.02 2.42 16 34 H 0.06 2.29 7.78 -2.39 -0.02 2.27 16 35 H 0.13 0.38 8.14 -2.39 -0.02 0.36 16 36 H 0.14 0.37 8.14 -2.38 -0.02 0.36 16 37 H 0.14 0.40 8.14 -2.39 -0.02 0.39 16 Total: -1.00 -76.96 312.14 3.15 -73.81 By element: Atomic # 1 Polarization: 17.02 SS G_CDS: 0.53 Total: 17.54 kcal Atomic # 6 Polarization: 15.38 SS G_CDS: 6.21 Total: 21.58 kcal Atomic # 7 Polarization: -134.96 SS G_CDS: -5.43 Total: -140.38 kcal Atomic # 8 Polarization: -19.10 SS G_CDS: -0.06 Total: -19.15 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 1.90 Total: 46.59 kcal Total: -76.96 3.15 -73.81 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989304929.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 177.375 kcal (2) G-P(sol) polarization free energy of solvation -76.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.813 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds