Wall clock time and date at job start Tue Mar 31 2020 02:52:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 N 1.28719 * 125.31976 * 2 1 4 4 N 1.28988 * 108.98501 * 179.97438 * 3 2 1 5 5 C 1.34181 * 107.25650 * 0.02562 * 4 3 2 6 6 C 1.48001 * 126.70126 * 179.97438 * 5 4 3 7 7 O 1.21541 * 120.00263 * 187.56243 * 6 5 4 8 8 N 1.34775 * 119.99870 * 7.83834 * 6 5 4 9 9 C 1.46929 * 120.63190 * 6.48802 * 8 6 5 10 10 C 1.53620 * 108.54398 * 126.36334 * 9 8 6 11 11 C 1.53041 * 109.24059 * 54.85849 * 10 9 8 12 12 N 1.46499 * 109.46001 * 178.48637 * 11 10 9 13 13 C 1.36940 * 120.00191 * 275.07104 * 12 11 10 14 14 H 1.08004 * 119.99996 * 359.97438 * 13 12 11 15 15 C 1.38812 * 120.00249 * 180.02562 * 13 12 11 16 16 N 1.31619 * 120.00101 * 180.02562 * 15 13 12 17 17 Si 1.86797 * 119.99765 * 359.97438 * 15 13 12 18 18 H 1.48497 * 109.47416 * 90.00471 * 17 15 13 19 19 H 1.48506 * 109.47224 * 210.00440 * 17 15 13 20 20 H 1.48504 * 109.47219 * 329.99871 * 17 15 13 21 21 C 1.53039 * 109.53922 * 298.50661 * 11 10 9 22 22 C 1.46928 * 120.63133 * 186.76191 * 8 6 5 23 23 N 1.28874 * 125.32138 * 180.28267 * 2 1 3 24 24 H 1.08999 * 109.47474 * 89.97087 * 1 2 3 25 25 H 1.09000 * 109.47006 * 209.97052 * 1 2 3 26 26 H 1.08999 * 109.46996 * 329.96759 * 1 2 3 27 27 H 1.09000 * 109.58153 * 246.20280 * 9 8 6 28 28 H 1.09000 * 109.58319 * 6.62261 * 9 8 6 29 29 H 1.08997 * 109.63870 * 294.86132 * 10 9 8 30 30 H 1.08998 * 109.42678 * 174.72192 * 10 9 8 31 31 H 1.09008 * 109.45120 * 58.52207 * 11 10 9 32 32 H 0.96996 * 120.00011 * 95.07154 * 12 11 10 33 33 H 0.96996 * 119.99564 * 180.02562 * 16 15 13 34 34 H 1.08999 * 109.49491 * 301.41697 * 21 11 10 35 35 H 1.08998 * 109.52483 * 181.32987 * 21 11 10 36 36 H 1.09000 * 109.58690 * 353.37725 * 22 8 6 37 37 H 1.09003 * 109.58540 * 113.65958 * 22 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.2091 1.0503 0.0000 4 7 3.4469 0.6875 0.0005 5 6 3.4685 -0.6541 0.0003 6 6 4.6692 -1.5195 0.0002 7 8 4.5522 -2.7212 -0.1385 8 7 5.8919 -0.9754 0.1596 9 6 6.0409 0.4518 0.4754 10 6 6.9108 0.5853 1.7345 11 6 8.2344 -0.1506 1.5134 12 7 9.0826 0.0042 2.6978 13 6 9.8723 1.1146 2.8341 14 1 9.8701 1.8762 2.0683 15 6 10.6764 1.2610 3.9561 16 7 11.4350 2.3285 4.0874 17 14 10.6807 -0.0565 5.2803 18 1 11.7244 -1.0664 4.9705 19 1 10.9700 0.5662 6.5972 20 1 9.3512 -0.7165 5.3263 21 6 7.9597 -1.6369 1.2736 22 6 7.1015 -1.7969 0.0148 23 7 2.2100 -1.0515 -0.0052 24 1 -0.3634 0.0005 -1.0276 25 1 -0.3633 -0.8902 0.5134 26 1 -0.3633 0.8897 0.5143 27 1 6.5206 0.9626 -0.3595 28 1 5.0598 0.8896 0.6593 29 1 6.3903 0.1496 2.5873 30 1 7.1087 1.6395 1.9283 31 1 8.7426 0.2695 0.6454 32 1 9.0849 -0.6799 3.3854 33 1 11.9971 2.4306 4.8712 34 1 7.4293 -2.0517 2.1308 35 1 8.9039 -2.1648 1.1397 36 1 6.8204 -2.8431 -0.1053 37 1 7.6647 -1.4673 -0.8583 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000996896882.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:52:02 Heat of formation + Delta-G solvation = 130.818586 kcal Electronic energy + Delta-G solvation = -21880.393482 eV Core-core repulsion = 18504.462878 eV Total energy + Delta-G solvation = -3375.930604 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.139 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -44.69715 -40.07489 -37.51686 -35.65525 -34.61554 -33.45638 -32.10935 -30.99950 -29.88576 -29.05811 -26.07292 -24.41401 -23.64847 -22.76257 -22.24877 -20.72369 -19.61482 -18.11669 -17.91823 -17.44731 -16.93131 -16.26551 -15.28909 -14.92127 -14.55841 -14.26182 -14.04879 -13.98431 -13.70193 -13.54128 -13.17203 -12.96904 -12.64326 -12.39192 -12.10144 -11.88854 -11.41602 -11.30438 -11.00393 -10.91438 -10.84290 -10.66449 -10.51221 -10.31038 -10.06142 -9.86521 -9.57681 -8.90490 -8.65382 -7.26857 -5.76708 -3.12327 0.71679 1.20422 1.44408 2.61078 2.94375 3.38465 3.41775 3.46278 3.71114 3.78862 4.36727 4.46558 4.59753 4.67963 4.82447 5.08072 5.11746 5.21550 5.33047 5.41552 5.53738 5.63403 5.65282 5.74293 5.86947 6.02003 6.17627 6.24123 6.28606 6.39626 6.55058 6.82428 6.97172 7.23872 7.76568 7.99501 7.99968 8.42523 9.20855 9.93623 10.13410 11.41597 Molecular weight = 280.14amu Principal moments of inertia in cm(-1) A = 0.028041 B = 0.003897 C = 0.003679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 998.296933 B = 7183.932700 C = 7609.002412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.135 5.135 3 N -0.058 5.058 4 N -0.248 5.248 5 C 0.139 3.861 6 C 0.613 3.387 7 O -0.519 6.519 8 N -0.582 5.582 9 C 0.082 3.918 10 C -0.149 4.149 11 C 0.181 3.819 12 N -0.749 5.749 13 C -0.243 4.243 14 H 0.091 0.909 15 C 0.004 3.996 16 N -0.934 5.934 17 Si 0.884 3.116 18 H -0.284 1.284 19 H -0.292 1.292 20 H -0.278 1.278 21 C -0.143 4.143 22 C 0.118 3.882 23 N -0.251 5.251 24 H 0.105 0.895 25 H 0.114 0.886 26 H 0.117 0.883 27 H 0.074 0.926 28 H 0.118 0.882 29 H 0.056 0.944 30 H 0.082 0.918 31 H 0.059 0.941 32 H 0.361 0.639 33 H 0.259 0.741 34 H 0.064 0.936 35 H 0.081 0.919 36 H 0.092 0.908 37 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.960 -5.646 -9.970 24.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.048 5.048 3 N -0.051 5.051 4 N -0.123 5.123 5 C -0.145 4.145 6 C 0.394 3.606 7 O -0.392 6.392 8 N -0.314 5.314 9 C -0.041 4.041 10 C -0.190 4.190 11 C 0.072 3.928 12 N -0.390 5.390 13 C -0.373 4.373 14 H 0.109 0.891 15 C -0.191 4.191 16 N -0.582 5.582 17 Si 0.714 3.286 18 H -0.211 1.211 19 H -0.218 1.218 20 H -0.204 1.204 21 C -0.182 4.182 22 C -0.004 4.004 23 N -0.104 5.104 24 H 0.124 0.876 25 H 0.132 0.868 26 H 0.135 0.865 27 H 0.092 0.908 28 H 0.135 0.865 29 H 0.075 0.925 30 H 0.101 0.899 31 H 0.077 0.923 32 H 0.193 0.807 33 H 0.069 0.931 34 H 0.082 0.918 35 H 0.099 0.901 36 H 0.111 0.889 37 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -22.261 -5.548 -10.077 25.057 hybrid contribution 0.194 -1.072 1.148 1.583 sum -22.067 -6.620 -8.928 24.708 Atomic orbital electron populations 1.22556 0.68500 1.07286 1.06406 1.50241 1.11118 1.00714 1.42751 1.78988 0.96743 1.14173 1.15188 1.76067 1.09225 1.10098 1.16875 1.25336 0.93105 0.90219 1.05860 1.16175 0.80668 0.85403 0.78332 1.90824 1.85085 1.13100 1.50192 1.47954 1.04381 1.11922 1.67159 1.22752 1.03883 0.78784 0.98662 1.22704 0.97405 1.03147 0.95705 1.20192 0.89868 0.91647 0.91116 1.42800 1.50436 1.24356 1.21442 1.19081 1.15716 0.97473 1.04996 0.89091 1.24668 0.99018 0.97313 0.98124 1.69700 1.30446 1.28047 1.29981 0.86564 0.77607 0.82012 0.82408 1.21086 1.21811 1.20381 1.22256 0.99719 0.99065 0.97137 1.21753 0.83815 0.96197 0.98587 1.75084 1.02414 1.14339 1.18594 0.87637 0.86778 0.86499 0.90765 0.86500 0.92516 0.89920 0.92287 0.80674 0.93077 0.91771 0.90093 0.88929 0.90528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.28 11.62 59.84 0.70 0.97 16 2 N -0.14 -1.31 4.39 -16.65 -0.07 -1.38 16 3 N -0.06 -0.68 13.23 60.35 0.80 0.12 16 4 N -0.25 -3.40 9.06 32.10 0.29 -3.11 16 5 C 0.14 1.99 7.80 -156.25 -1.22 0.78 16 6 C 0.61 9.53 7.70 -12.26 -0.09 9.43 16 7 O -0.52 -9.17 16.52 5.33 0.09 -9.08 16 8 N -0.58 -8.41 2.97 -173.55 -0.51 -8.93 16 9 C 0.08 1.18 6.15 -3.49 -0.02 1.15 16 10 C -0.15 -2.53 5.67 -26.39 -0.15 -2.68 16 11 C 0.18 3.34 2.73 -67.89 -0.19 3.15 16 12 N -0.75 -17.31 4.92 -53.38 -0.26 -17.57 16 13 C -0.24 -6.71 10.41 -15.06 -0.16 -6.86 16 14 H 0.09 2.68 8.06 -52.48 -0.42 2.25 16 15 C 0.00 0.13 5.50 -17.43 -0.10 0.04 16 16 N -0.93 -29.16 13.97 55.49 0.78 -28.38 16 17 Si 0.88 22.10 27.73 -169.99 -4.71 17.38 16 18 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 19 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 20 H -0.28 -6.59 6.52 56.52 0.37 -6.22 16 21 C -0.14 -2.18 5.55 -26.61 -0.15 -2.33 16 22 C 0.12 1.59 6.44 -3.71 -0.02 1.57 16 23 N -0.25 -3.23 12.17 32.11 0.39 -2.84 16 24 H 0.11 0.11 8.14 -51.93 -0.42 -0.32 16 25 H 0.11 0.18 8.14 -51.93 -0.42 -0.24 16 26 H 0.12 0.10 8.14 -51.93 -0.42 -0.32 16 27 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 28 H 0.12 1.67 4.15 -67.27 -0.28 1.39 16 29 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 30 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 31 H 0.06 1.11 8.08 -51.92 -0.42 0.69 16 32 H 0.36 8.31 5.66 -40.82 -0.23 8.08 16 33 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 34 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 35 H 0.08 1.19 8.14 -51.93 -0.42 0.76 16 36 H 0.09 1.23 7.00 -51.93 -0.36 0.87 16 37 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 309.82 15.07 4.67 4.67 Total: -1.00 -35.28 309.82 -4.64 -39.92 By element: Atomic # 1 Polarization: 8.68 SS G_CDS: -4.69 Total: 3.99 kcal Atomic # 6 Polarization: 6.62 SS G_CDS: -1.40 Total: 5.22 kcal Atomic # 7 Polarization: -63.50 SS G_CDS: 1.40 Total: -62.10 kcal Atomic # 8 Polarization: -9.17 SS G_CDS: 0.09 Total: -9.08 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -4.71 Total: 17.38 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -35.28 -4.64 -39.92 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996896882.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.738 kcal (2) G-P(sol) polarization free energy of solvation -35.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 135.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.919 kcal (6) G-S(sol) free energy of system = (1) + (5) 130.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds