Wall clock time and date at job start Tue Mar 31 2020 02:54:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 N 1.28722 * 125.32118 * 2 1 4 4 N 1.28975 * 108.99292 * 179.97438 * 3 2 1 5 5 C 1.34193 * 107.24963 * 0.02562 * 4 3 2 6 6 C 1.48009 * 126.69666 * 179.97438 * 5 4 3 7 7 O 1.21541 * 119.99717 * 180.02562 * 6 5 4 8 8 N 1.34776 * 120.00151 * 0.02562 * 6 5 4 9 9 C 1.46501 * 120.00089 * 180.02562 * 8 6 5 10 10 H 1.09002 * 109.49433 * 325.06442 * 9 8 6 11 11 C 1.53032 * 109.49843 * 205.00391 * 9 8 6 12 12 C 1.53040 * 109.52632 * 178.69149 * 11 9 8 13 13 C 1.53169 * 109.32747 * 61.37144 * 12 11 9 14 14 N 1.46920 * 108.76394 * 305.35342 * 13 12 11 15 15 C 1.36934 * 120.62867 * 233.63260 * 14 13 12 16 16 H 1.08001 * 120.00188 * 152.61077 * 15 14 13 17 17 C 1.38809 * 120.00302 * 332.60590 * 15 14 13 18 18 N 1.31617 * 120.00213 * 159.37131 * 17 15 14 19 19 Si 1.86799 * 119.99815 * 339.37793 * 17 15 14 20 20 H 1.48502 * 109.47406 * 92.92467 * 19 17 15 21 21 H 1.48504 * 109.47139 * 212.92608 * 19 17 15 22 22 H 1.48494 * 109.47265 * 332.92336 * 19 17 15 23 23 C 1.46924 * 118.74039 * 53.61519 * 14 13 12 24 24 N 1.28873 * 125.32091 * 180.22886 * 2 1 3 25 25 H 1.09001 * 109.47223 * 90.02750 * 1 2 3 26 26 H 1.09006 * 109.47244 * 210.02604 * 1 2 3 27 27 H 1.08998 * 109.47281 * 330.02126 * 1 2 3 28 28 H 0.97004 * 119.99740 * 0.02562 * 8 6 5 29 29 H 1.09004 * 109.45977 * 298.70237 * 11 9 8 30 30 H 1.08997 * 109.46700 * 58.67537 * 11 9 8 31 31 H 1.09008 * 109.49507 * 181.30555 * 12 11 9 32 32 H 1.08997 * 109.49651 * 301.40046 * 12 11 9 33 33 H 1.08999 * 109.58368 * 185.56816 * 13 12 11 34 34 H 1.08997 * 109.59147 * 65.14270 * 13 12 11 35 35 H 0.97003 * 120.00155 * 180.02562 * 18 17 15 36 36 H 1.08998 * 109.58870 * 186.60405 * 23 14 13 37 37 H 1.09002 * 109.59198 * 66.17309 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2092 1.0503 0.0000 4 7 3.4469 0.6877 0.0005 5 6 3.4685 -0.6541 0.0003 6 6 4.6693 -1.5194 0.0002 7 8 4.5469 -2.7286 -0.0004 8 7 5.8984 -0.9664 0.0009 9 6 7.0870 -1.8229 0.0002 10 1 6.8896 -2.7195 0.5878 11 6 8.2656 -1.0614 0.6108 12 6 9.4993 -1.9665 0.6404 13 6 9.8706 -2.3643 -0.7914 14 7 8.6952 -2.9675 -1.4342 15 6 8.7765 -4.2037 -2.0175 16 1 7.8972 -4.8269 -2.0870 17 6 9.9890 -4.6559 -2.5195 18 7 10.1861 -5.9443 -2.7027 19 14 11.3412 -3.4359 -2.9350 20 1 12.2401 -3.2754 -1.7639 21 1 12.1225 -3.9385 -4.0935 22 1 10.7360 -2.1240 -3.2778 23 6 7.4308 -2.2192 -1.4390 24 7 2.2101 -1.0515 -0.0042 25 1 -0.3634 -0.0005 -1.0277 26 1 -0.3634 -0.8898 0.5143 27 1 -0.3634 0.8901 0.5135 28 1 5.9960 -0.0013 0.0018 29 1 8.4780 -0.1777 0.0090 30 1 8.0142 -0.7569 1.6268 31 1 10.3323 -1.4315 1.0965 32 1 9.2796 -2.8621 1.2215 33 1 10.6864 -3.0868 -0.7700 34 1 10.1780 -1.4794 -1.3485 35 1 11.0336 -6.2603 -3.0532 36 1 6.6367 -2.8460 -1.8449 37 1 7.5391 -1.3223 -2.0490 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001008212776.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:54:01 Heat of formation + Delta-G solvation = 126.902303 kcal Electronic energy + Delta-G solvation = -21808.337593 eV Core-core repulsion = 18432.237167 eV Total energy + Delta-G solvation = -3376.100427 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.139 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -44.64698 -39.75848 -37.65354 -35.52614 -34.54115 -33.40178 -32.52262 -30.83041 -29.89120 -28.70940 -25.48022 -25.27129 -23.41594 -22.54623 -21.97352 -20.79961 -19.80288 -18.42579 -17.87494 -17.05659 -16.76501 -15.90961 -15.34822 -15.04657 -14.40367 -14.30292 -14.11397 -13.89762 -13.65534 -13.63011 -13.20565 -12.88340 -12.44271 -12.37313 -12.09411 -11.52354 -11.39650 -11.36999 -11.19181 -10.93785 -10.75484 -10.61581 -10.29188 -10.15593 -9.93124 -9.72004 -9.45085 -9.09739 -8.53186 -6.95904 -5.90344 -3.27237 0.75953 1.27118 1.47346 2.77567 3.09312 3.34064 3.50975 3.53892 3.79371 3.91972 4.39503 4.56067 4.58554 4.69957 5.00053 5.03457 5.15863 5.28165 5.34984 5.43804 5.52802 5.67428 5.79903 5.92852 6.03840 6.19196 6.32239 6.41004 6.42595 6.60232 6.66133 6.74939 6.92615 7.43123 7.90138 7.98912 8.13079 8.38124 8.97812 9.75425 10.10725 11.25539 Molecular weight = 280.14amu Principal moments of inertia in cm(-1) A = 0.033682 B = 0.003825 C = 0.003630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 831.099731 B = 7317.705102 C = 7711.528033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.137 5.137 3 N -0.058 5.058 4 N -0.255 5.255 5 C 0.136 3.864 6 C 0.611 3.389 7 O -0.498 6.498 8 N -0.698 5.698 9 C 0.125 3.875 10 H 0.096 0.904 11 C -0.116 4.116 12 C -0.131 4.131 13 C 0.121 3.879 14 N -0.601 5.601 15 C -0.259 4.259 16 H 0.087 0.913 17 C 0.024 3.976 18 N -0.907 5.907 19 Si 0.883 3.117 20 H -0.288 1.288 21 H -0.304 1.304 22 H -0.271 1.271 23 C 0.143 3.857 24 N -0.247 5.247 25 H 0.106 0.894 26 H 0.114 0.886 27 H 0.115 0.885 28 H 0.406 0.594 29 H 0.064 0.936 30 H 0.060 0.940 31 H 0.061 0.939 32 H 0.068 0.932 33 H 0.075 0.925 34 H 0.027 0.973 35 H 0.262 0.738 36 H 0.069 0.931 37 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.180 15.824 7.850 23.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.050 5.050 3 N -0.052 5.052 4 N -0.130 5.130 5 C -0.149 4.149 6 C 0.390 3.610 7 O -0.369 6.369 8 N -0.350 5.350 9 C 0.021 3.979 10 H 0.114 0.886 11 C -0.155 4.155 12 C -0.171 4.171 13 C -0.005 4.005 14 N -0.324 5.324 15 C -0.388 4.388 16 H 0.105 0.895 17 C -0.175 4.175 18 N -0.550 5.550 19 Si 0.713 3.287 20 H -0.216 1.216 21 H -0.232 1.232 22 H -0.196 1.196 23 C 0.015 3.985 24 N -0.101 5.101 25 H 0.124 0.876 26 H 0.133 0.867 27 H 0.134 0.866 28 H 0.241 0.759 29 H 0.082 0.918 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.087 0.913 33 H 0.093 0.907 34 H 0.045 0.955 35 H 0.072 0.928 36 H 0.087 0.913 37 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -16.536 15.273 7.761 23.811 hybrid contribution 0.910 0.743 -0.322 1.218 sum -15.625 16.016 7.440 23.580 Atomic orbital electron populations 1.22547 0.68492 1.07198 1.06477 1.50263 1.11145 1.00708 1.42891 1.78901 0.96431 1.14112 1.15783 1.76119 1.10065 1.10263 1.16543 1.25500 0.93339 0.90198 1.05826 1.16120 0.80755 0.85804 0.78351 1.90916 1.85276 1.12586 1.48075 1.45829 1.04567 1.11156 1.73404 1.21883 0.81912 0.93458 1.00665 0.88604 1.21690 0.94963 0.98685 1.00129 1.21998 0.96108 0.99261 0.99732 1.21418 0.91242 0.96937 0.90882 1.44284 1.05360 1.18708 1.64096 1.18956 0.97685 0.89777 1.32335 0.89503 1.25263 0.97644 0.95705 0.98900 1.69843 1.24864 1.12346 1.47990 0.86950 0.82128 0.82369 0.77203 1.21583 1.23199 1.19580 1.21236 0.89709 0.95476 0.92059 1.75130 1.02530 1.14180 1.18273 0.87607 0.86716 0.86616 0.75893 0.91759 0.92130 0.92065 0.91284 0.90679 0.95519 0.92774 0.91259 0.95624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.30 11.62 59.85 0.70 0.99 16 2 N -0.14 -1.35 4.39 -16.65 -0.07 -1.43 16 3 N -0.06 -0.67 13.23 60.35 0.80 0.13 16 4 N -0.25 -3.39 12.26 32.10 0.39 -2.99 16 5 C 0.14 1.98 8.14 -156.24 -1.27 0.71 16 6 C 0.61 10.00 7.80 -12.26 -0.10 9.91 16 7 O -0.50 -10.04 16.76 5.33 0.09 -9.95 16 8 N -0.70 -10.12 5.08 -54.58 -0.28 -10.40 16 9 C 0.13 2.13 2.60 -67.81 -0.18 1.95 16 10 H 0.10 1.85 7.58 -51.93 -0.39 1.45 16 11 C -0.12 -1.70 5.36 -26.69 -0.14 -1.84 16 12 C -0.13 -2.21 6.08 -26.62 -0.16 -2.38 16 13 C 0.12 2.59 4.20 -3.73 -0.02 2.57 16 14 N -0.60 -14.50 2.77 -172.34 -0.48 -14.97 16 15 C -0.26 -7.44 10.03 -15.06 -0.15 -7.59 16 16 H 0.09 2.70 8.06 -52.49 -0.42 2.28 16 17 C 0.02 0.69 5.23 -17.43 -0.09 0.60 16 18 N -0.91 -28.28 13.97 55.49 0.78 -27.50 16 19 Si 0.88 22.48 24.34 -169.99 -4.14 18.34 16 20 H -0.29 -7.00 6.62 56.52 0.37 -6.63 16 21 H -0.30 -7.89 7.11 56.52 0.40 -7.49 16 22 H -0.27 -6.75 6.63 56.52 0.37 -6.38 16 23 C 0.14 2.93 6.09 -3.71 -0.02 2.91 16 24 N -0.25 -3.33 12.17 32.11 0.39 -2.94 16 25 H 0.11 0.16 8.14 -51.93 -0.42 -0.26 16 26 H 0.11 0.22 8.14 -51.93 -0.42 -0.21 16 27 H 0.12 0.09 8.14 -51.93 -0.42 -0.34 16 28 H 0.41 4.85 8.35 -40.82 -0.34 4.51 16 29 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.06 0.88 8.14 -51.92 -0.42 0.45 16 32 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 33 H 0.08 1.77 4.49 -51.93 -0.23 1.54 16 34 H 0.03 0.56 7.08 -51.93 -0.37 0.19 16 35 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 36 H 0.07 1.55 7.93 -51.93 -0.41 1.14 16 37 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 309.43 15.07 4.66 4.66 Total: -1.00 -35.88 309.43 -4.03 -39.91 By element: Atomic # 1 Polarization: 4.05 SS G_CDS: -4.74 Total: -0.69 kcal Atomic # 6 Polarization: 9.26 SS G_CDS: -1.43 Total: 7.83 kcal Atomic # 7 Polarization: -61.64 SS G_CDS: 1.53 Total: -60.11 kcal Atomic # 8 Polarization: -10.04 SS G_CDS: 0.09 Total: -9.95 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -4.14 Total: 18.34 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -35.88 -4.03 -39.91 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001008212776.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.817 kcal (2) G-P(sol) polarization free energy of solvation -35.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 130.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.914 kcal (6) G-S(sol) free energy of system = (1) + (5) 126.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds