Wall clock time and date at job start Tue Mar 31 2020 02:53:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 N 1.28720 * 125.31880 * 2 1 4 4 N 1.28987 * 108.98672 * 179.74463 * 3 2 1 5 5 C 1.34188 * 107.24906 * 0.40488 * 4 3 2 6 6 C 1.48007 * 126.69774 * 179.87076 * 5 4 3 7 7 O 1.21538 * 120.00415 * 179.40998 * 6 5 4 8 8 N 1.34784 * 119.99921 * 359.68099 * 6 5 4 9 9 C 1.46499 * 119.99893 * 179.72890 * 8 6 5 10 10 C 1.53003 * 109.46708 * 180.02562 * 9 8 6 11 11 H 1.08994 * 110.89135 * 51.11723 * 10 9 8 12 12 C 1.55163 * 111.00290 * 175.00114 * 10 9 8 13 13 C 1.54318 * 102.94196 * 153.57350 * 12 10 9 14 14 N 1.47023 * 107.27431 * 337.80207 * 13 12 10 15 15 C 1.36937 * 125.65141 * 178.91847 * 14 13 12 16 16 H 1.07991 * 120.00236 * 180.02562 * 15 14 13 17 17 C 1.38810 * 119.99594 * 0.03097 * 15 14 13 18 18 N 1.31619 * 120.00355 * 359.97438 * 17 15 14 19 19 Si 1.86806 * 119.99840 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.46982 * 59.99674 * 19 17 15 21 21 H 1.48502 * 109.47261 * 179.97438 * 19 17 15 22 22 H 1.48496 * 109.47149 * 299.99938 * 19 17 15 23 23 C 1.47422 * 108.70259 * 358.94416 * 14 13 12 24 24 N 1.28867 * 125.32237 * 180.02562 * 2 1 3 25 25 H 1.09003 * 109.46829 * 269.99577 * 1 2 3 26 26 H 1.08997 * 109.47481 * 29.99461 * 1 2 3 27 27 H 1.08999 * 109.47201 * 149.99900 * 1 2 3 28 28 H 0.97005 * 119.99846 * 359.72678 * 8 6 5 29 29 H 1.08998 * 109.47134 * 299.99552 * 9 8 6 30 30 H 1.08994 * 109.47397 * 59.99843 * 9 8 6 31 31 H 1.09006 * 110.71449 * 271.93663 * 12 10 9 32 32 H 1.08997 * 110.71684 * 35.02853 * 12 10 9 33 33 H 1.09001 * 109.88582 * 97.22633 * 13 12 10 34 34 H 1.09000 * 109.87972 * 218.38549 * 13 12 10 35 35 H 0.96997 * 119.99922 * 180.02562 * 18 17 15 36 36 H 1.09004 * 110.36900 * 265.29216 * 23 14 13 37 37 H 1.08994 * 110.37047 * 142.95995 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2091 1.0503 0.0000 4 7 3.4470 0.6876 0.0054 5 6 3.4685 -0.6541 -0.0001 6 6 4.6692 -1.5195 0.0004 7 8 4.5469 -2.7287 0.0057 8 7 5.8984 -0.9665 0.0003 9 6 7.0869 -1.8230 0.0067 10 6 8.3440 -0.9509 0.0059 11 1 8.2971 -0.2007 0.7952 12 6 9.6232 -1.8189 0.1388 13 6 10.7020 -0.9514 -0.5432 14 7 10.0080 -0.0228 -1.4475 15 6 10.6076 0.9318 -2.2249 16 1 10.0071 1.5679 -2.8582 17 6 11.9873 1.0819 -2.1990 18 7 12.7192 0.3070 -1.4269 19 14 12.8054 2.3836 -3.2601 20 1 12.2914 3.7247 -2.8825 21 1 14.2750 2.3404 -3.0515 22 1 12.4998 2.1209 -4.6894 23 6 8.5597 -0.2891 -1.3781 24 7 2.2101 -1.0514 -0.0005 25 1 -0.3633 -0.0001 1.0277 26 1 -0.3634 0.8900 -0.5137 27 1 -0.3633 -0.8900 -0.5138 28 1 5.9960 -0.0014 -0.0040 29 1 7.0794 -2.4481 0.8997 30 1 7.0831 -2.4565 -0.8802 31 1 9.8687 -1.9857 1.1877 32 1 9.5010 -2.7681 -0.3829 33 1 11.2572 -0.3910 0.2090 34 1 11.3816 -1.5851 -1.1128 35 1 13.6833 0.4121 -1.4085 36 1 8.2606 -0.9701 -2.1749 37 1 7.9989 0.6432 -1.4443 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028746603.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:53:36 Heat of formation + Delta-G solvation = 124.204946 kcal Electronic energy + Delta-G solvation = -21188.483963 eV Core-core repulsion = 17812.266571 eV Total energy + Delta-G solvation = -3376.217393 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.139 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -44.69994 -39.71695 -37.64404 -35.58171 -34.77540 -33.46359 -32.51496 -30.07094 -29.22307 -28.23344 -26.05269 -24.96165 -23.61939 -23.01205 -21.17981 -19.99780 -19.94640 -18.49376 -17.93170 -17.16312 -16.74803 -16.10845 -15.50730 -14.90709 -14.54721 -14.37430 -14.18159 -13.91987 -13.73218 -13.51159 -13.08428 -12.46887 -12.32690 -12.02149 -11.74897 -11.46174 -11.41837 -11.38676 -10.88440 -10.75877 -10.69501 -10.62546 -10.26001 -10.10453 -9.92681 -9.83073 -9.62983 -9.11524 -8.57024 -6.80426 -5.68397 -3.01778 0.69336 1.20653 1.41982 2.69739 2.95641 3.43137 3.47226 3.48471 3.74216 3.86575 4.34785 4.51596 4.53857 4.66026 4.95040 5.08715 5.21316 5.29557 5.43201 5.56237 5.62158 5.68304 5.88500 5.99602 6.05169 6.26708 6.36590 6.53500 6.54692 6.69372 6.92837 7.28671 7.58781 7.65588 7.82396 7.85453 7.97775 8.29109 9.25233 9.85544 10.51454 11.43392 Molecular weight = 280.14amu Principal moments of inertia in cm(-1) A = 0.027950 B = 0.003246 C = 0.002962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.555427 B = 8624.971647 C = 9449.896666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.137 5.137 3 N -0.055 5.055 4 N -0.250 5.250 5 C 0.133 3.867 6 C 0.614 3.386 7 O -0.512 6.512 8 N -0.698 5.698 9 C 0.133 3.867 10 C -0.119 4.119 11 H 0.083 0.917 12 C -0.134 4.134 13 C 0.177 3.823 14 N -0.606 5.606 15 C -0.228 4.228 16 H 0.077 0.923 17 C -0.009 4.009 18 N -0.923 5.923 19 Si 0.912 3.088 20 H -0.285 1.285 21 H -0.290 1.290 22 H -0.285 1.285 23 C 0.140 3.860 24 N -0.249 5.249 25 H 0.105 0.895 26 H 0.116 0.884 27 H 0.114 0.886 28 H 0.413 0.587 29 H 0.073 0.927 30 H 0.076 0.924 31 H 0.062 0.938 32 H 0.060 0.940 33 H 0.047 0.953 34 H 0.043 0.957 35 H 0.252 0.748 36 H 0.020 0.980 37 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.006 -1.829 5.164 23.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.050 5.050 3 N -0.049 5.049 4 N -0.125 5.125 5 C -0.152 4.152 6 C 0.393 3.607 7 O -0.385 6.385 8 N -0.350 5.350 9 C 0.010 3.990 10 C -0.139 4.139 11 H 0.101 0.899 12 C -0.173 4.173 13 C 0.052 3.948 14 N -0.332 5.332 15 C -0.357 4.357 16 H 0.095 0.905 17 C -0.205 4.205 18 N -0.571 5.571 19 Si 0.742 3.258 20 H -0.212 1.212 21 H -0.216 1.216 22 H -0.212 1.212 23 C 0.014 3.986 24 N -0.103 5.103 25 H 0.124 0.876 26 H 0.135 0.865 27 H 0.133 0.867 28 H 0.249 0.751 29 H 0.091 0.909 30 H 0.094 0.906 31 H 0.081 0.919 32 H 0.079 0.921 33 H 0.065 0.935 34 H 0.061 0.939 35 H 0.063 0.937 36 H 0.038 0.962 37 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -23.209 -2.124 5.122 23.862 hybrid contribution 0.593 0.806 -0.559 1.146 sum -22.615 -1.318 4.563 23.109 Atomic orbital electron populations 1.22555 0.68456 1.07283 1.06438 1.50272 1.11158 1.00706 1.42828 1.78956 0.96381 1.13971 1.15582 1.76182 1.10040 1.10116 1.16167 1.25390 0.93240 0.90321 1.06208 1.16092 0.80786 0.85676 0.78171 1.90854 1.85615 1.12752 1.49233 1.45828 1.04479 1.11898 1.72757 1.21585 0.81941 0.92779 1.02698 1.22645 0.92868 0.98087 1.00270 0.89881 1.22863 0.95349 0.98501 1.00577 1.21150 0.90868 0.90334 0.92399 1.44467 0.99715 1.39402 1.49659 1.19018 0.90026 1.09235 1.17399 0.90501 1.24799 0.96157 0.99577 0.99950 1.69951 1.04830 1.40579 1.41695 0.86198 0.78410 0.81199 0.79948 1.21161 1.21626 1.21202 1.21610 0.87486 0.96836 0.92675 1.75081 1.02475 1.14338 1.18444 0.87612 0.86525 0.86741 0.75084 0.90909 0.90596 0.91890 0.92101 0.93516 0.93873 0.93725 0.96227 0.94367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.25 11.62 59.85 0.70 0.95 16 2 N -0.14 -1.28 4.39 -16.65 -0.07 -1.35 16 3 N -0.05 -0.63 13.23 60.35 0.80 0.17 16 4 N -0.25 -3.35 12.26 32.10 0.39 -2.95 16 5 C 0.13 1.83 8.14 -156.25 -1.27 0.56 16 6 C 0.61 9.09 7.84 -12.25 -0.10 8.99 16 7 O -0.51 -8.92 17.10 5.33 0.09 -8.83 16 8 N -0.70 -9.44 5.50 -61.20 -0.34 -9.78 16 9 C 0.13 1.87 5.13 -4.04 -0.02 1.85 16 10 C -0.12 -1.94 3.05 -88.46 -0.27 -2.21 16 11 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 12 C -0.13 -2.39 6.42 -24.90 -0.16 -2.55 16 13 C 0.18 4.25 5.37 -3.07 -0.02 4.24 16 14 N -0.61 -15.43 3.39 -170.07 -0.58 -16.01 16 15 C -0.23 -6.40 10.28 -15.06 -0.15 -6.56 16 16 H 0.08 2.08 7.83 -52.49 -0.41 1.66 16 17 C -0.01 -0.25 5.49 -17.43 -0.10 -0.34 16 18 N -0.92 -27.23 10.31 55.49 0.57 -26.66 16 19 Si 0.91 22.24 29.55 -169.99 -5.02 17.22 16 20 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 21 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 22 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 23 C 0.14 2.82 6.65 -2.52 -0.02 2.80 16 24 N -0.25 -3.12 12.16 32.11 0.39 -2.73 16 25 H 0.11 0.08 8.14 -51.93 -0.42 -0.34 16 26 H 0.12 0.06 8.14 -51.93 -0.42 -0.36 16 27 H 0.11 0.14 8.14 -51.93 -0.42 -0.28 16 28 H 0.41 5.20 8.22 -40.82 -0.34 4.87 16 29 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.08 1.12 7.96 -51.93 -0.41 0.70 16 31 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.06 1.02 8.04 -51.93 -0.42 0.60 16 33 H 0.05 1.24 7.38 -51.93 -0.38 0.86 16 34 H 0.04 1.15 7.51 -51.93 -0.39 0.76 16 35 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 36 H 0.02 0.40 7.91 -51.93 -0.41 -0.01 16 37 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 319.36 15.07 4.81 4.81 Total: -1.00 -35.07 319.36 -5.21 -40.29 By element: Atomic # 1 Polarization: 2.95 SS G_CDS: -4.86 Total: -1.90 kcal Atomic # 6 Polarization: 9.13 SS G_CDS: -1.41 Total: 7.72 kcal Atomic # 7 Polarization: -60.48 SS G_CDS: 1.17 Total: -59.31 kcal Atomic # 8 Polarization: -8.92 SS G_CDS: 0.09 Total: -8.83 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.22 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -35.07 -5.21 -40.29 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028746603.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.491 kcal (2) G-P(sol) polarization free energy of solvation -35.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 129.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.286 kcal (6) G-S(sol) free energy of system = (1) + (5) 124.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds