Wall clock time and date at job start Tue Mar 31 2020 02:53:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 N 1.28713 * 125.32007 * 2 1 4 4 N 1.28986 * 108.99020 * 180.02562 * 3 2 1 5 5 C 1.34192 * 107.24815 * 359.97438 * 4 3 2 6 6 C 1.48006 * 126.69871 * 179.97438 * 5 4 3 7 7 O 1.21531 * 120.00089 * 180.02562 * 6 5 4 8 8 N 1.34779 * 119.99862 * 0.02562 * 6 5 4 9 9 C 1.46499 * 119.99872 * 180.02562 * 8 6 5 10 10 C 1.53000 * 109.46840 * 180.02562 * 9 8 6 11 11 H 1.08997 * 110.64262 * 305.69360 * 10 9 8 12 12 C 1.55164 * 110.71750 * 182.55756 * 10 9 8 13 13 C 1.54908 * 101.57931 * 206.13010 * 12 10 9 14 14 N 1.47430 * 104.83134 * 37.01126 * 13 12 10 15 15 C 1.36942 * 125.64516 * 155.89947 * 14 13 12 16 16 H 1.07996 * 119.99418 * 179.97438 * 15 14 13 17 17 C 1.38811 * 120.00015 * 359.97438 * 15 14 13 18 18 N 1.31614 * 120.00405 * 359.97438 * 17 15 14 19 19 Si 1.86804 * 119.99497 * 179.97438 * 17 15 14 20 20 H 1.48492 * 109.47216 * 90.00111 * 19 17 15 21 21 H 1.48499 * 109.46792 * 209.99880 * 19 17 15 22 22 H 1.48503 * 109.47146 * 329.99447 * 19 17 15 23 23 C 1.47314 * 108.73467 * 335.71446 * 14 13 12 24 24 N 1.28876 * 125.31656 * 180.31059 * 2 1 3 25 25 H 1.09005 * 109.47337 * 89.97757 * 1 2 3 26 26 H 1.09006 * 109.47510 * 209.97769 * 1 2 3 27 27 H 1.09007 * 109.47386 * 329.97946 * 1 2 3 28 28 H 0.97000 * 119.99708 * 359.97438 * 8 6 5 29 29 H 1.09002 * 109.47391 * 59.99686 * 9 8 6 30 30 H 1.09001 * 109.46813 * 299.99742 * 9 8 6 31 31 H 1.08995 * 111.00450 * 324.20690 * 12 10 9 32 32 H 1.09003 * 111.00051 * 88.02285 * 12 10 9 33 33 H 1.09003 * 110.36036 * 155.84656 * 13 12 10 34 34 H 1.08998 * 110.36782 * 278.06041 * 13 12 10 35 35 H 0.96991 * 120.00555 * 179.97438 * 18 17 15 36 36 H 1.09002 * 110.06317 * 241.86989 * 23 14 13 37 37 H 1.08996 * 109.85306 * 120.61548 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2091 1.0502 0.0000 4 7 3.4470 0.6875 -0.0005 5 6 3.4685 -0.6542 -0.0003 6 6 4.6692 -1.5196 -0.0013 7 8 4.5468 -2.7287 -0.0014 8 7 5.8983 -0.9666 -0.0020 9 6 7.0868 -1.8232 -0.0036 10 6 8.3439 -0.9511 -0.0035 11 1 8.3199 -0.2423 -0.8312 12 6 9.6213 -1.8294 -0.0698 13 6 10.6673 -0.9085 0.6066 14 7 9.9290 -0.2281 1.6862 15 6 10.4835 0.3055 2.8190 16 1 9.8542 0.7860 3.5534 17 6 11.8544 0.2287 3.0231 18 7 12.6213 -0.3574 2.1283 19 14 12.6108 0.9572 4.5680 20 1 12.6445 -0.0737 5.6362 21 1 13.9937 1.4118 4.2750 22 1 11.7954 2.1129 5.0208 23 6 8.4965 -0.2130 1.3432 24 7 2.2100 -1.0516 -0.0057 25 1 -0.3634 0.0004 -1.0277 26 1 -0.3634 -0.8902 0.5135 27 1 -0.3634 0.8898 0.5142 28 1 5.9960 -0.0016 -0.0023 29 1 7.0804 -2.4520 -0.8939 30 1 7.0819 -2.4529 0.8861 31 1 9.4904 -2.7526 0.4945 32 1 9.8965 -2.0411 -1.1031 33 1 11.4833 -1.5012 1.0201 34 1 11.0519 -0.1816 -0.1088 35 1 13.5792 -0.4108 2.2708 36 1 8.1464 0.8145 1.2445 37 1 7.9255 -0.7287 2.1153 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028746604.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:53:40 Heat of formation + Delta-G solvation = 125.374509 kcal Electronic energy + Delta-G solvation = -21214.234891 eV Core-core repulsion = 17838.068215 eV Total energy + Delta-G solvation = -3376.166677 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.139 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -44.69791 -39.71919 -37.63689 -35.57965 -34.76564 -33.46193 -32.52675 -30.06582 -29.22371 -28.20184 -26.05175 -24.98512 -23.61326 -23.00661 -21.20085 -20.11865 -19.75529 -18.49290 -17.92993 -17.15499 -16.78207 -16.07038 -15.57925 -14.92121 -14.57553 -14.37605 -14.21512 -13.91805 -13.72113 -13.55945 -12.87529 -12.48629 -12.46823 -11.78593 -11.71002 -11.49799 -11.44613 -11.40816 -10.93764 -10.78347 -10.69405 -10.60892 -10.29864 -10.08666 -9.99299 -9.77802 -9.51189 -9.11378 -8.62784 -6.81042 -5.63175 -3.04592 0.69517 1.20805 1.42144 2.70130 2.96361 3.42130 3.47041 3.49004 3.74329 3.86815 4.34849 4.50296 4.54115 4.66088 4.95018 5.09045 5.24398 5.29598 5.41110 5.53978 5.62341 5.68710 5.87231 6.02276 6.08735 6.27891 6.36350 6.58262 6.59417 6.72953 6.92245 7.29061 7.53600 7.65108 7.82633 7.87755 7.98284 8.38677 9.24649 9.85311 10.50110 11.40935 Molecular weight = 280.14amu Principal moments of inertia in cm(-1) A = 0.028951 B = 0.003220 C = 0.002995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 966.932599 B = 8693.089465 C = 9348.136681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.137 5.137 3 N -0.055 5.055 4 N -0.250 5.250 5 C 0.133 3.867 6 C 0.613 3.387 7 O -0.512 6.512 8 N -0.698 5.698 9 C 0.133 3.867 10 C -0.116 4.116 11 H 0.079 0.921 12 C -0.134 4.134 13 C 0.152 3.848 14 N -0.605 5.605 15 C -0.221 4.221 16 H 0.077 0.923 17 C -0.012 4.012 18 N -0.923 5.923 19 Si 0.914 3.086 20 H -0.289 1.289 21 H -0.290 1.290 22 H -0.282 1.282 23 C 0.139 3.861 24 N -0.249 5.249 25 H 0.105 0.895 26 H 0.114 0.886 27 H 0.116 0.884 28 H 0.413 0.587 29 H 0.073 0.927 30 H 0.077 0.923 31 H 0.064 0.936 32 H 0.061 0.939 33 H 0.107 0.893 34 H 0.012 0.988 35 H 0.252 0.748 36 H 0.022 0.978 37 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.397 -0.099 -6.994 23.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.050 5.050 3 N -0.049 5.049 4 N -0.125 5.125 5 C -0.151 4.151 6 C 0.392 3.608 7 O -0.384 6.384 8 N -0.350 5.350 9 C 0.010 3.990 10 C -0.135 4.135 11 H 0.097 0.903 12 C -0.174 4.174 13 C 0.027 3.973 14 N -0.331 5.331 15 C -0.350 4.350 16 H 0.095 0.905 17 C -0.207 4.207 18 N -0.572 5.572 19 Si 0.745 3.255 20 H -0.216 1.216 21 H -0.217 1.217 22 H -0.207 1.207 23 C 0.013 3.987 24 N -0.103 5.103 25 H 0.124 0.876 26 H 0.133 0.867 27 H 0.135 0.865 28 H 0.249 0.751 29 H 0.091 0.909 30 H 0.095 0.905 31 H 0.083 0.917 32 H 0.080 0.920 33 H 0.125 0.875 34 H 0.030 0.970 35 H 0.063 0.937 36 H 0.040 0.960 37 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -22.632 -0.433 -6.890 23.661 hybrid contribution 0.453 0.602 0.746 1.060 sum -22.179 0.169 -6.144 23.015 Atomic orbital electron populations 1.22557 0.68454 1.07293 1.06429 1.50271 1.11159 1.00704 1.42828 1.78947 0.96383 1.13987 1.15593 1.76177 1.10041 1.10125 1.16204 1.25398 0.93247 0.90314 1.06173 1.16093 0.80787 0.85685 0.78186 1.90854 1.85596 1.12754 1.49176 1.45830 1.04511 1.11862 1.72798 1.21645 0.81809 0.92776 1.02768 1.22470 0.93578 0.97996 0.99450 0.90257 1.23010 0.95246 0.98840 1.00255 1.21932 0.93677 0.93134 0.88560 1.44575 1.00374 1.67225 1.20917 1.19087 0.90794 1.29469 0.95620 0.90520 1.24781 0.96004 1.01319 0.98640 1.69785 1.04117 1.48702 1.34590 0.86073 0.78504 0.78590 0.82348 1.21614 1.21671 1.20746 1.21411 0.88124 0.96550 0.92633 1.75092 1.02474 1.14317 1.18435 0.87622 0.86733 0.86520 0.75146 0.90888 0.90504 0.91736 0.92005 0.87500 0.96976 0.93743 0.96048 0.95657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.25 11.62 59.85 0.70 0.95 16 2 N -0.14 -1.29 4.39 -16.64 -0.07 -1.36 16 3 N -0.06 -0.64 13.23 60.35 0.80 0.16 16 4 N -0.25 -3.36 12.26 32.10 0.39 -2.97 16 5 C 0.13 1.85 8.14 -156.24 -1.27 0.58 16 6 C 0.61 9.22 7.84 -12.25 -0.10 9.13 16 7 O -0.51 -9.06 17.10 5.34 0.09 -8.97 16 8 N -0.70 -9.59 5.43 -61.20 -0.33 -9.93 16 9 C 0.13 1.92 5.00 -4.04 -0.02 1.90 16 10 C -0.12 -1.90 2.98 -88.78 -0.26 -2.16 16 11 H 0.08 1.22 8.14 -51.93 -0.42 0.79 16 12 C -0.13 -2.44 6.54 -24.58 -0.16 -2.60 16 13 C 0.15 3.64 5.89 -2.53 -0.01 3.63 16 14 N -0.60 -15.47 3.40 -169.84 -0.58 -16.05 16 15 C -0.22 -6.21 10.28 -15.06 -0.15 -6.37 16 16 H 0.08 2.09 7.83 -52.49 -0.41 1.68 16 17 C -0.01 -0.34 5.49 -17.43 -0.10 -0.44 16 18 N -0.92 -26.98 10.09 55.49 0.56 -26.42 16 19 Si 0.91 22.23 29.55 -169.99 -5.02 17.20 16 20 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 21 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 22 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 23 C 0.14 2.83 6.67 -2.91 -0.02 2.81 16 24 N -0.25 -3.15 12.17 32.11 0.39 -2.76 16 25 H 0.11 0.08 8.14 -51.93 -0.42 -0.34 16 26 H 0.11 0.15 8.14 -51.93 -0.42 -0.27 16 27 H 0.12 0.07 8.14 -51.93 -0.42 -0.36 16 28 H 0.41 5.23 8.15 -40.82 -0.33 4.90 16 29 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.08 1.20 8.00 -51.93 -0.42 0.78 16 31 H 0.06 1.16 8.05 -51.93 -0.42 0.74 16 32 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 33 H 0.11 2.90 5.87 -51.93 -0.31 2.59 16 34 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 35 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 36 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.03 0.52 7.73 -51.93 -0.40 0.12 16 LS Contribution 318.44 15.07 4.80 4.80 Total: -1.00 -34.84 318.44 -5.18 -40.01 By element: Atomic # 1 Polarization: 3.66 SS G_CDS: -4.80 Total: -1.14 kcal Atomic # 6 Polarization: 8.82 SS G_CDS: -1.40 Total: 7.42 kcal Atomic # 7 Polarization: -60.49 SS G_CDS: 1.16 Total: -59.33 kcal Atomic # 8 Polarization: -9.06 SS G_CDS: 0.09 Total: -8.97 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.20 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -34.84 -5.18 -40.01 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028746604.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.389 kcal (2) G-P(sol) polarization free energy of solvation -34.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 130.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.015 kcal (6) G-S(sol) free energy of system = (1) + (5) 125.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds