Wall clock time and date at job start Tue Mar 31 2020 02:53:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 N 1.28713 * 125.32007 * 2 1 4 4 N 1.28986 * 108.99020 * 180.02562 * 3 2 1 5 5 C 1.34192 * 107.24815 * 359.97438 * 4 3 2 6 6 C 1.48006 * 126.69871 * 179.97438 * 5 4 3 7 7 O 1.21531 * 120.00089 * 180.02562 * 6 5 4 8 8 N 1.34779 * 119.99862 * 0.02562 * 6 5 4 9 9 C 1.46499 * 119.99872 * 180.02562 * 8 6 5 10 10 C 1.53000 * 109.46840 * 180.02562 * 9 8 6 11 11 H 1.08997 * 110.64262 * 305.69360 * 10 9 8 12 12 C 1.55164 * 110.71750 * 182.55756 * 10 9 8 13 13 C 1.54908 * 101.57931 * 206.13010 * 12 10 9 14 14 N 1.47430 * 104.83134 * 37.01126 * 13 12 10 15 15 C 1.36942 * 125.64516 * 155.89947 * 14 13 12 16 16 H 1.07996 * 119.99418 * 179.97438 * 15 14 13 17 17 C 1.38811 * 120.00015 * 359.97438 * 15 14 13 18 18 N 1.31614 * 120.00405 * 359.97438 * 17 15 14 19 19 Si 1.86804 * 119.99497 * 179.97438 * 17 15 14 20 20 H 1.48492 * 109.47216 * 90.00111 * 19 17 15 21 21 H 1.48499 * 109.46792 * 209.99880 * 19 17 15 22 22 H 1.48503 * 109.47146 * 329.99447 * 19 17 15 23 23 C 1.47314 * 108.73467 * 335.71446 * 14 13 12 24 24 N 1.28876 * 125.31656 * 180.31059 * 2 1 3 25 25 H 1.09005 * 109.47337 * 89.97757 * 1 2 3 26 26 H 1.09006 * 109.47510 * 209.97769 * 1 2 3 27 27 H 1.09007 * 109.47386 * 329.97946 * 1 2 3 28 28 H 0.97000 * 119.99708 * 359.97438 * 8 6 5 29 29 H 1.09002 * 109.47391 * 59.99686 * 9 8 6 30 30 H 1.09001 * 109.46813 * 299.99742 * 9 8 6 31 31 H 1.08995 * 111.00450 * 324.20690 * 12 10 9 32 32 H 1.09003 * 111.00051 * 88.02285 * 12 10 9 33 33 H 1.09003 * 110.36036 * 155.84656 * 13 12 10 34 34 H 1.08998 * 110.36782 * 278.06041 * 13 12 10 35 35 H 0.96991 * 120.00555 * 179.97438 * 18 17 15 36 36 H 1.09002 * 110.06317 * 241.86989 * 23 14 13 37 37 H 1.08996 * 109.85306 * 120.61548 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2091 1.0502 0.0000 4 7 3.4470 0.6875 -0.0005 5 6 3.4685 -0.6542 -0.0003 6 6 4.6692 -1.5196 -0.0013 7 8 4.5468 -2.7287 -0.0014 8 7 5.8983 -0.9666 -0.0020 9 6 7.0868 -1.8232 -0.0036 10 6 8.3439 -0.9511 -0.0035 11 1 8.3199 -0.2423 -0.8312 12 6 9.6213 -1.8294 -0.0698 13 6 10.6673 -0.9085 0.6066 14 7 9.9290 -0.2281 1.6862 15 6 10.4835 0.3055 2.8190 16 1 9.8542 0.7860 3.5534 17 6 11.8544 0.2287 3.0231 18 7 12.6213 -0.3574 2.1283 19 14 12.6108 0.9572 4.5680 20 1 12.6445 -0.0737 5.6362 21 1 13.9937 1.4118 4.2750 22 1 11.7954 2.1129 5.0208 23 6 8.4965 -0.2130 1.3432 24 7 2.2100 -1.0516 -0.0057 25 1 -0.3634 0.0004 -1.0277 26 1 -0.3634 -0.8902 0.5135 27 1 -0.3634 0.8898 0.5142 28 1 5.9960 -0.0016 -0.0023 29 1 7.0804 -2.4520 -0.8939 30 1 7.0819 -2.4529 0.8861 31 1 9.4904 -2.7526 0.4945 32 1 9.8965 -2.0411 -1.1031 33 1 11.4833 -1.5012 1.0201 34 1 11.0519 -0.1816 -0.1088 35 1 13.5792 -0.4108 2.2708 36 1 8.1464 0.8145 1.2445 37 1 7.9255 -0.7287 2.1153 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028746604.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:53:39 Heat of formation + Delta-G solvation = 98.584379 kcal Electronic energy + Delta-G solvation = -21215.396599 eV Core-core repulsion = 17838.068215 eV Total energy + Delta-G solvation = -3377.328384 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.139 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -45.57071 -40.91655 -39.23488 -36.41649 -36.10539 -34.39730 -34.30963 -31.72840 -30.29001 -29.45604 -27.52127 -26.43825 -24.92662 -23.94186 -22.44507 -21.76697 -21.21651 -19.54830 -18.78512 -18.74634 -17.93858 -17.31814 -16.93306 -16.62689 -16.07271 -15.62675 -15.29796 -15.16756 -14.53660 -14.25406 -14.17258 -14.12280 -13.52606 -13.38249 -13.18562 -13.13772 -12.81019 -12.65480 -12.37218 -12.26793 -12.00837 -11.98451 -11.81786 -11.62219 -11.51969 -11.50479 -11.27728 -10.72048 -10.27853 -8.85547 -7.75628 -5.19399 -0.19842 0.22696 0.79398 1.47405 1.49146 1.57758 1.71357 1.85799 2.50982 2.77493 3.05162 3.33681 3.63529 3.81789 3.96154 3.99070 4.04912 4.09898 4.23769 4.47291 4.50247 4.61485 4.67413 4.72218 4.79439 4.94205 4.96112 5.02942 5.17108 5.21187 5.41073 5.49894 5.70320 5.85758 6.18127 6.34916 6.79092 6.99915 7.13822 7.81387 8.44620 9.26219 Molecular weight = 280.14amu Principal moments of inertia in cm(-1) A = 0.028951 B = 0.003220 C = 0.002995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 966.932599 B = 8693.089465 C = 9348.136681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.115 5.115 3 N -0.061 5.061 4 N -0.268 5.268 5 C 0.116 3.884 6 C 0.617 3.383 7 O -0.543 6.543 8 N -0.690 5.690 9 C 0.143 3.857 10 C -0.096 4.096 11 H 0.098 0.902 12 C -0.120 4.120 13 C 0.151 3.849 14 N -0.629 5.629 15 C -0.238 4.238 16 H 0.078 0.922 17 C -0.068 4.068 18 N -0.949 5.949 19 Si 0.979 3.021 20 H -0.286 1.286 21 H -0.293 1.293 22 H -0.271 1.271 23 C 0.134 3.866 24 N -0.262 5.262 25 H 0.132 0.868 26 H 0.132 0.868 27 H 0.142 0.858 28 H 0.419 0.581 29 H 0.092 0.908 30 H 0.067 0.933 31 H 0.066 0.934 32 H 0.093 0.907 33 H 0.071 0.929 34 H -0.010 1.010 35 H 0.247 0.753 36 H 0.027 0.973 37 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.640 0.240 -7.413 25.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.030 5.030 3 N -0.054 5.054 4 N -0.142 5.142 5 C -0.168 4.168 6 C 0.398 3.602 7 O -0.418 6.418 8 N -0.342 5.342 9 C 0.020 3.980 10 C -0.115 4.115 11 H 0.116 0.884 12 C -0.159 4.159 13 C 0.026 3.974 14 N -0.355 5.355 15 C -0.368 4.368 16 H 0.096 0.904 17 C -0.260 4.260 18 N -0.599 5.599 19 Si 0.807 3.193 20 H -0.213 1.213 21 H -0.219 1.219 22 H -0.196 1.196 23 C 0.009 3.991 24 N -0.117 5.117 25 H 0.150 0.850 26 H 0.150 0.850 27 H 0.161 0.839 28 H 0.256 0.744 29 H 0.110 0.890 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.111 0.889 33 H 0.089 0.911 34 H 0.008 0.992 35 H 0.057 0.943 36 H 0.045 0.955 37 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges -24.914 -0.060 -7.315 25.965 hybrid contribution 0.980 0.538 0.875 1.420 sum -23.933 0.477 -6.440 24.789 Atomic orbital electron populations 1.23284 0.64875 1.09486 1.08804 1.50843 1.12774 0.99448 1.39933 1.78870 0.96100 1.14477 1.15972 1.76135 1.11171 1.09894 1.17004 1.25125 0.93342 0.90466 1.07819 1.16165 0.81255 0.85379 0.77435 1.90831 1.86117 1.14031 1.50802 1.45721 1.04120 1.12097 1.72225 1.21472 0.81005 0.92283 1.03240 1.22309 0.93717 0.97755 0.97694 0.88368 1.22846 0.93971 0.97696 1.01362 1.21746 0.94605 0.93020 0.88038 1.44902 1.02671 1.67265 1.20661 1.19447 0.91303 1.29333 0.96669 0.90415 1.25610 0.96550 1.02220 1.01646 1.70043 1.03861 1.49802 1.36160 0.85072 0.77324 0.78048 0.78858 1.21297 1.21945 1.19621 1.21592 0.85375 0.97390 0.94748 1.75053 1.02352 1.15498 1.18808 0.85033 0.85009 0.83945 0.74421 0.89035 0.91497 0.91491 0.88892 0.91058 0.99204 0.94340 0.95526 0.95886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.17 11.62 127.77 1.49 1.66 16 2 N -0.11 -1.92 4.39 -206.57 -0.91 -2.82 16 3 N -0.06 -1.30 13.23 37.02 0.49 -0.81 16 4 N -0.27 -6.88 12.26 -52.36 -0.64 -7.52 16 5 C 0.12 3.12 8.14 137.15 1.12 4.24 16 6 C 0.62 17.96 7.84 86.83 0.68 18.65 16 7 O -0.54 -18.82 17.10 -3.81 -0.07 -18.88 16 8 N -0.69 -17.92 5.43 -465.81 -2.53 -20.45 16 9 C 0.14 3.84 5.00 86.38 0.43 4.27 16 10 C -0.10 -2.96 2.98 -9.60 -0.03 -2.98 16 11 H 0.10 2.73 8.14 -2.39 -0.02 2.71 16 12 C -0.12 -4.18 6.54 31.99 0.21 -3.97 16 13 C 0.15 7.35 5.89 86.85 0.51 7.86 16 14 N -0.63 -32.50 3.40 -691.25 -2.35 -34.86 16 15 C -0.24 -13.57 10.28 84.03 0.86 -12.70 16 16 H 0.08 4.27 7.83 -2.91 -0.02 4.24 16 17 C -0.07 -3.90 5.49 84.86 0.47 -3.43 16 18 N -0.95 -56.96 10.09 21.65 0.22 -56.75 16 19 Si 0.98 46.24 29.55 68.60 2.03 48.27 16 20 H -0.29 -13.28 7.11 99.48 0.71 -12.58 16 21 H -0.29 -13.85 7.11 99.48 0.71 -13.15 16 22 H -0.27 -12.21 7.11 99.48 0.71 -11.51 16 23 C 0.13 5.37 6.67 86.67 0.58 5.95 16 24 N -0.26 -6.23 12.17 -52.31 -0.64 -6.86 16 25 H 0.13 -0.26 8.14 -2.38 -0.02 -0.28 16 26 H 0.13 -0.07 8.14 -2.38 -0.02 -0.09 16 27 H 0.14 -0.34 8.14 -2.38 -0.02 -0.36 16 28 H 0.42 9.96 8.15 -92.71 -0.76 9.21 16 29 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 30 H 0.07 1.98 8.00 -2.39 -0.02 1.96 16 31 H 0.07 2.32 8.05 -2.39 -0.02 2.30 16 32 H 0.09 2.69 8.14 -2.39 -0.02 2.67 16 33 H 0.07 4.00 5.87 -2.39 -0.01 3.98 16 34 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 35 H 0.25 14.38 8.31 -92.72 -0.77 13.61 16 36 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 37 H 0.02 0.94 7.73 -2.39 -0.02 0.92 16 Total: -1.00 -77.09 318.44 2.26 -74.83 By element: Atomic # 1 Polarization: 5.98 SS G_CDS: 0.35 Total: 6.33 kcal Atomic # 6 Polarization: 13.22 SS G_CDS: 6.31 Total: 19.53 kcal Atomic # 7 Polarization: -123.71 SS G_CDS: -6.36 Total: -130.07 kcal Atomic # 8 Polarization: -18.82 SS G_CDS: -0.07 Total: -18.88 kcal Atomic # 14 Polarization: 46.24 SS G_CDS: 2.03 Total: 48.27 kcal Total: -77.09 2.26 -74.83 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028746604.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 173.414 kcal (2) G-P(sol) polarization free energy of solvation -77.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.830 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds