Wall clock time and date at job start Tue Mar 31 2020 02:53:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.34775 * 120.00356 * 2 1 4 4 O 1.21540 * 120.00158 * 175.95117 * 3 2 1 5 5 C 1.47999 * 119.99911 * 355.95462 * 3 2 1 6 6 N 1.34191 * 126.69907 * 5.93131 * 5 3 2 7 7 N 1.28981 * 107.24907 * 179.83936 * 6 5 3 8 8 N 1.28721 * 108.99130 * 0.43268 * 7 6 5 9 9 C 1.46502 * 125.31873 * 179.68684 * 8 7 6 10 10 N 1.28867 * 109.35787 * 359.72549 * 8 7 6 11 11 C 1.46504 * 119.99629 * 180.02562 * 2 1 3 12 12 H 1.08999 * 110.64017 * 178.30817 * 11 2 1 13 13 C 1.55153 * 110.71976 * 54.97703 * 11 2 1 14 14 C 1.55135 * 101.48641 * 205.96774 * 13 11 2 15 15 N 1.47424 * 104.71889 * 37.29442 * 14 13 11 16 16 C 1.36939 * 125.64845 * 155.82412 * 15 14 13 17 17 H 1.08000 * 119.99830 * 190.27488 * 16 15 14 18 18 C 1.38811 * 120.00035 * 10.26826 * 16 15 14 19 19 N 1.31619 * 119.99765 * 9.14403 * 18 16 15 20 20 Si 1.86794 * 119.99898 * 189.14900 * 18 16 15 21 21 H 1.48507 * 109.47064 * 265.02398 * 20 18 16 22 22 H 1.48500 * 109.47508 * 25.02446 * 20 18 16 23 23 H 1.48497 * 109.47312 * 145.02337 * 20 18 16 24 24 C 1.47024 * 108.70410 * 335.55195 * 15 14 13 25 25 H 1.09001 * 109.46864 * 275.71437 * 1 2 3 26 26 H 1.09001 * 109.47389 * 35.71034 * 1 2 3 27 27 H 1.09003 * 109.47866 * 155.71342 * 1 2 3 28 28 H 1.08993 * 109.47235 * 270.03958 * 9 8 7 29 29 H 1.09001 * 109.47311 * 30.05121 * 9 8 7 30 30 H 1.09007 * 109.46805 * 150.04124 * 9 8 7 31 31 H 1.09000 * 111.00299 * 324.20260 * 13 11 2 32 32 H 1.08996 * 111.01015 * 88.02508 * 13 11 2 33 33 H 1.09001 * 110.49296 * 278.45659 * 14 13 11 34 34 H 1.08994 * 110.34669 * 156.05373 * 14 13 11 35 35 H 0.97001 * 119.99973 * 179.97438 * 19 18 16 36 36 H 1.09003 * 109.87918 * 120.70687 * 24 15 14 37 37 H 1.09002 * 109.88632 * 241.87096 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3520 1.1684 0.0743 5 6 1.4017 2.4473 -0.0904 6 7 0.0698 2.6092 -0.0663 7 7 -0.1636 3.8737 -0.1663 8 7 0.9568 4.5004 -0.2602 9 6 1.1069 5.9513 -0.3966 10 7 1.9258 3.6520 -0.2164 11 6 2.1974 -1.2688 -0.0006 12 1 3.2725 -1.0918 -0.0306 13 6 1.7505 -2.1601 -1.1894 14 6 2.0689 -3.5788 -0.6486 15 7 1.7322 -3.5174 0.7854 16 6 1.4002 -4.5867 1.5737 17 1 1.0098 -4.4244 2.5675 18 6 1.5654 -5.8794 1.0955 19 7 2.2045 -6.0856 -0.0364 20 14 0.8806 -7.3261 2.0585 21 1 1.9445 -7.8903 2.9276 22 1 -0.2544 -6.8683 2.8995 23 1 0.4075 -8.3699 1.1142 24 6 1.8181 -2.1187 1.2304 25 1 -0.3633 0.1023 1.0226 26 1 -0.3634 0.8344 -0.5998 27 1 -0.3635 -0.9367 -0.4227 28 1 1.1094 6.2186 -1.4533 29 1 0.2767 6.4510 0.1027 30 1 2.0463 6.2639 0.0595 31 1 0.6848 -2.0434 -1.3861 32 1 2.3366 -1.9431 -2.0824 33 1 3.1261 -3.8091 -0.7805 34 1 1.4519 -4.3234 -1.1515 35 1 2.3203 -6.9889 -0.3704 36 1 0.8540 -1.7945 1.6220 37 1 2.5847 -2.0207 1.9990 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033344964.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:53:43 Heat of formation + Delta-G solvation = 124.774624 kcal Electronic energy + Delta-G solvation = -21919.594619 eV Core-core repulsion = 18543.401929 eV Total energy + Delta-G solvation = -3376.192690 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.139 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -45.56848 -41.26659 -39.03641 -36.70984 -36.03936 -34.39469 -34.00951 -31.21084 -30.03970 -29.03478 -28.04035 -26.83535 -25.75015 -24.11675 -22.48320 -22.16956 -20.60269 -19.10423 -18.91454 -18.73323 -17.94720 -17.64539 -16.73534 -16.46383 -15.94130 -15.77939 -15.29763 -14.75468 -14.47072 -14.32223 -14.14640 -14.02755 -13.79957 -13.57092 -13.39509 -12.93804 -12.83430 -12.70453 -12.46577 -12.25413 -12.20827 -12.04423 -11.98782 -11.80766 -11.53607 -11.48979 -11.43192 -10.68335 -9.82841 -8.87272 -7.87026 -5.23001 -0.19714 0.23361 0.78597 1.49007 1.50025 1.55697 1.60782 1.79705 2.50900 2.65340 3.00348 3.33039 3.66627 3.73472 3.84381 3.94425 4.04766 4.20736 4.24793 4.25509 4.47045 4.53300 4.59971 4.67145 4.74246 4.87698 4.97933 4.98968 5.01695 5.16036 5.40204 5.46072 5.57496 5.70697 6.07297 6.19938 6.66298 7.01797 7.08199 7.74316 8.40511 9.24838 Molecular weight = 280.14amu Principal moments of inertia in cm(-1) A = 0.047476 B = 0.003490 C = 0.003402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 589.630888 B = 8022.015288 C = 8228.097318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.573 5.573 3 C 0.611 3.389 4 O -0.548 6.548 5 C 0.123 3.877 6 N -0.259 5.259 7 N -0.061 5.061 8 N -0.113 5.113 9 C 0.072 3.928 10 N -0.262 5.262 11 C 0.142 3.858 12 H 0.096 0.904 13 C -0.134 4.134 14 C 0.181 3.819 15 N -0.620 5.620 16 C -0.245 4.245 17 H 0.080 0.920 18 C -0.061 4.061 19 N -0.947 5.947 20 Si 0.979 3.021 21 H -0.289 1.289 22 H -0.267 1.267 23 H -0.291 1.291 24 C 0.130 3.870 25 H 0.067 0.933 26 H 0.106 0.894 27 H 0.084 0.916 28 H 0.131 0.869 29 H 0.144 0.856 30 H 0.130 0.870 31 H 0.087 0.913 32 H 0.085 0.915 33 H 0.001 0.999 34 H 0.046 0.954 35 H 0.249 0.751 36 H 0.044 0.956 37 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.924 24.847 -3.037 25.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.303 5.303 3 C 0.394 3.606 4 O -0.423 6.423 5 C -0.160 4.160 6 N -0.133 5.133 7 N -0.054 5.054 8 N -0.029 5.029 9 C -0.064 4.064 10 N -0.118 5.118 11 C 0.039 3.961 12 H 0.114 0.886 13 C -0.173 4.173 14 C 0.055 3.945 15 N -0.347 5.347 16 C -0.373 4.373 17 H 0.097 0.903 18 C -0.254 4.254 19 N -0.595 5.595 20 Si 0.807 3.193 21 H -0.216 1.216 22 H -0.192 1.192 23 H -0.218 1.218 24 C 0.004 3.996 25 H 0.086 0.914 26 H 0.124 0.876 27 H 0.102 0.898 28 H 0.149 0.851 29 H 0.162 0.838 30 H 0.148 0.852 31 H 0.105 0.895 32 H 0.104 0.896 33 H 0.019 0.981 34 H 0.064 0.936 35 H 0.059 0.941 36 H 0.062 0.938 37 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges -5.793 25.091 -3.020 25.927 hybrid contribution 0.455 -1.365 0.526 1.532 sum -5.338 23.725 -2.493 24.446 Atomic orbital electron populations 1.22372 0.76347 1.04915 1.03775 1.47575 1.08914 1.03878 1.69962 1.16371 0.85397 0.81270 0.77546 1.90816 1.13826 1.86491 1.51214 1.24842 0.89378 0.94078 1.07749 1.76236 1.12690 1.07110 1.17283 1.78875 1.11424 0.99694 1.15449 1.50812 0.99903 1.12523 1.39616 1.23280 1.09057 0.65704 1.08381 1.75062 1.18719 0.99211 1.18792 1.21995 0.96785 0.81171 0.96175 0.88588 1.23284 1.02462 0.94817 0.96758 1.21238 0.96584 0.92893 0.83776 1.44693 1.81230 1.01943 1.06818 1.19383 1.35083 0.84909 0.97962 0.90256 1.25666 1.00789 0.99843 0.99134 1.70139 1.45996 1.20240 1.23168 0.85061 0.78058 0.78767 0.77387 1.21593 1.19210 1.21771 1.21594 0.98484 0.84889 0.94639 0.91445 0.87606 0.89774 0.85088 0.83785 0.85162 0.89496 0.89632 0.98136 0.93599 0.94129 0.93798 0.96581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.78 8.41 127.77 1.08 2.85 16 2 N -0.57 -18.30 2.88 -819.20 -2.36 -20.66 16 3 C 0.61 20.54 7.69 86.83 0.67 21.20 16 4 O -0.55 -21.84 16.48 -3.84 -0.06 -21.90 16 5 C 0.12 3.51 7.81 137.15 1.07 4.58 16 6 N -0.26 -6.58 9.07 -52.37 -0.47 -7.05 16 7 N -0.06 -1.28 13.23 37.02 0.49 -0.79 16 8 N -0.11 -1.92 4.39 -206.58 -0.91 -2.83 16 9 C 0.07 0.19 11.62 127.77 1.49 1.67 16 10 N -0.26 -6.57 12.17 -52.32 -0.64 -7.21 16 11 C 0.14 5.30 3.35 46.18 0.15 5.46 16 12 H 0.10 3.85 7.00 -2.39 -0.02 3.83 16 13 C -0.13 -4.94 6.60 32.06 0.21 -4.73 16 14 C 0.18 8.85 5.43 86.93 0.47 9.32 16 15 N -0.62 -32.20 3.39 -691.54 -2.35 -34.54 16 16 C -0.24 -13.78 10.24 84.03 0.86 -12.92 16 17 H 0.08 4.30 7.85 -2.91 -0.02 4.28 16 18 C -0.06 -3.45 5.40 84.86 0.46 -2.99 16 19 N -0.95 -56.76 10.68 21.65 0.23 -56.53 16 20 Si 0.98 45.63 29.56 68.60 2.03 47.66 16 21 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 22 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 23 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 24 C 0.13 5.60 6.88 86.73 0.60 6.20 16 25 H 0.07 1.71 8.09 -2.39 -0.02 1.69 16 26 H 0.11 2.55 5.27 -2.39 -0.01 2.54 16 27 H 0.08 2.20 6.13 -2.39 -0.01 2.19 16 28 H 0.13 -0.22 8.14 -2.39 -0.02 -0.23 16 29 H 0.14 -0.38 8.14 -2.39 -0.02 -0.40 16 30 H 0.13 0.00 8.14 -2.38 -0.02 -0.02 16 31 H 0.09 2.91 6.15 -2.39 -0.01 2.90 16 32 H 0.09 2.82 8.14 -2.39 -0.02 2.81 16 33 H 0.00 0.03 8.07 -2.39 -0.02 0.01 16 34 H 0.05 2.48 6.94 -2.39 -0.02 2.47 16 35 H 0.25 14.48 8.31 -92.71 -0.77 13.71 16 36 H 0.04 1.78 7.07 -2.39 -0.02 1.77 16 37 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 Total: -1.00 -75.64 308.19 4.11 -71.53 By element: Atomic # 1 Polarization: 0.58 SS G_CDS: 1.10 Total: 1.68 kcal Atomic # 6 Polarization: 23.59 SS G_CDS: 7.05 Total: 30.65 kcal Atomic # 7 Polarization: -123.61 SS G_CDS: -6.01 Total: -129.61 kcal Atomic # 8 Polarization: -21.84 SS G_CDS: -0.06 Total: -21.90 kcal Atomic # 14 Polarization: 45.63 SS G_CDS: 2.03 Total: 47.66 kcal Total: -75.64 4.11 -71.53 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033344964.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 196.305 kcal (2) G-P(sol) polarization free energy of solvation -75.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 120.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.531 kcal (6) G-S(sol) free energy of system = (1) + (5) 124.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds