Wall clock time and date at job start Tue Mar 31 2020 02:14:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08992 * 110.88846 * 2 1 4 4 C 1.54909 * 111.00534 * 123.88579 * 2 1 3 5 5 N 1.47418 * 104.83184 * 155.08374 * 4 2 1 6 6 C 1.34776 * 125.65074 * 155.83634 * 5 4 2 7 7 O 1.21288 * 119.99824 * 359.97438 * 6 5 4 8 8 C 1.50695 * 120.00406 * 179.97438 * 6 5 4 9 9 N 1.46495 * 109.47507 * 179.97438 * 8 6 5 10 10 C 1.34598 * 126.44151 * 124.71600 * 9 8 6 11 11 N 1.31064 * 106.68463 * 179.88251 * 10 9 8 12 12 N 1.28845 * 107.99064 * 0.38264 * 11 10 9 13 13 N 1.28738 * 109.39528 * 359.75593 * 12 11 10 14 14 C 1.47024 * 108.70570 * 335.86900 * 5 4 2 15 15 C 1.54326 * 107.26637 * 1.05952 * 14 5 4 16 16 H 1.08999 * 110.71537 * 140.55908 * 15 14 5 17 17 N 1.46500 * 110.72191 * 263.82679 * 15 14 5 18 18 C 1.36938 * 120.00536 * 268.52549 * 17 15 14 19 19 H 1.08002 * 119.99518 * 359.97438 * 18 17 15 20 20 C 1.38806 * 120.00413 * 179.97438 * 18 17 15 21 21 N 1.31620 * 119.99848 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 120.00134 * 180.02562 * 20 18 17 23 23 H 1.48494 * 109.47272 * 89.99701 * 22 20 18 24 24 H 1.48502 * 109.47075 * 210.00125 * 22 20 18 25 25 H 1.48502 * 109.46959 * 329.99514 * 22 20 18 26 26 H 1.09001 * 109.47002 * 297.56794 * 1 2 3 27 27 H 1.08993 * 109.46955 * 57.57232 * 1 2 3 28 28 H 1.09000 * 109.47050 * 177.57060 * 1 2 3 29 29 H 1.09003 * 110.36235 * 273.92057 * 4 2 1 30 30 H 1.09000 * 110.36734 * 36.24379 * 4 2 1 31 31 H 1.09004 * 109.47560 * 300.00153 * 8 6 5 32 32 H 1.09011 * 109.47094 * 59.99880 * 8 6 5 33 33 H 1.08007 * 126.65714 * 0.02562 * 10 9 8 34 34 H 1.08996 * 109.88300 * 120.48004 * 14 5 4 35 35 H 1.09003 * 109.88428 * 241.64959 * 14 5 4 36 36 H 0.97006 * 120.00063 * 88.52291 * 17 15 14 37 37 H 0.97004 * 120.00013 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9187 1.0183 0.0000 4 6 2.0853 -0.8063 1.2005 5 7 3.4272 -1.2428 0.7737 6 6 4.4481 -1.5598 1.5944 7 8 4.3018 -1.4964 2.7967 8 6 5.7715 -1.9930 1.0182 9 7 6.7084 -2.2786 2.1076 10 6 7.3825 -3.4274 2.3018 11 7 8.1067 -3.2608 3.3814 12 7 7.8827 -2.0746 3.8317 13 7 7.0383 -1.4784 3.0644 14 6 3.4675 -1.2744 -0.6957 15 6 2.0861 -0.8083 -1.2020 16 1 2.1922 -0.1707 -2.0796 17 7 1.2268 -1.9579 -1.4956 18 6 1.2056 -2.4928 -2.7560 19 1 1.8222 -2.0669 -3.5337 20 6 0.3918 -3.5824 -3.0340 21 7 -0.3600 -4.1011 -2.0863 22 14 0.3636 -4.3125 -4.7532 23 1 1.3974 -5.3733 -4.8575 24 1 -0.9749 -4.8976 -5.0206 25 1 0.6456 -3.2468 -5.7483 26 1 -0.3633 0.4756 0.9110 27 1 -0.3633 0.5510 -0.8674 28 1 -0.3633 -1.0267 -0.0436 29 1 2.1561 -0.1713 2.0837 30 1 1.4520 -1.6700 1.4029 31 1 5.6294 -2.8904 0.4160 32 1 6.1740 -1.1959 0.3930 33 1 7.3373 -4.3135 1.6860 34 1 4.2426 -0.6001 -1.0598 35 1 3.6650 -2.2897 -1.0394 36 1 0.6727 -2.3402 -0.7972 37 1 -0.9284 -4.8627 -2.2805 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054364513.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:14:18 Heat of formation + Delta-G solvation = 111.191846 kcal Electronic energy + Delta-G solvation = -21915.198869 eV Core-core repulsion = 18538.417186 eV Total energy + Delta-G solvation = -3376.781683 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.139 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -44.22412 -40.14823 -38.00200 -35.47509 -34.19462 -32.71570 -32.43339 -30.69318 -29.49348 -27.94936 -26.13798 -24.06699 -23.89104 -23.40933 -22.23164 -19.62072 -19.47115 -18.00632 -17.76084 -17.29826 -16.45373 -16.12376 -16.02331 -15.33806 -14.73400 -14.57085 -14.00258 -13.70027 -13.30877 -13.14506 -12.92694 -12.63044 -12.34119 -12.20727 -12.06133 -11.76184 -11.27802 -11.25759 -11.20033 -11.05450 -10.93034 -10.61681 -10.47668 -10.39183 -10.12423 -9.95539 -9.79664 -9.17879 -8.58004 -7.24489 -5.98975 -3.30396 1.15442 1.71744 2.21321 2.39067 2.90751 3.28439 3.34660 3.37020 3.97484 4.11565 4.23987 4.38959 4.53446 4.70244 4.84420 4.96076 5.18696 5.31896 5.32339 5.46172 5.57295 5.58709 5.71750 5.79988 5.92505 5.98503 6.06589 6.15295 6.19809 6.29559 6.38148 6.55139 6.81877 7.47358 7.49175 7.96282 8.18317 8.54765 9.30563 9.83557 10.17920 11.22665 Molecular weight = 280.14amu Principal moments of inertia in cm(-1) A = 0.020817 B = 0.004237 C = 0.003723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1344.762181 B = 6606.427205 C = 7519.515048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.115 4.115 3 H 0.080 0.920 4 C 0.116 3.884 5 N -0.599 5.599 6 C 0.514 3.486 7 O -0.526 6.526 8 C 0.100 3.900 9 N -0.297 5.297 10 C 0.161 3.839 11 N -0.310 5.310 12 N -0.083 5.083 13 N -0.063 5.063 14 C 0.061 3.939 15 C 0.173 3.827 16 H 0.076 0.924 17 N -0.710 5.710 18 C -0.253 4.253 19 H 0.073 0.927 20 C -0.005 4.005 21 N -0.927 5.927 22 Si 0.907 3.093 23 H -0.289 1.289 24 H -0.291 1.291 25 H -0.281 1.281 26 H 0.045 0.955 27 H 0.059 0.941 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.144 0.856 32 H 0.134 0.866 33 H 0.235 0.765 34 H 0.060 0.940 35 H 0.081 0.919 36 H 0.387 0.613 37 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.959 5.207 1.168 10.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.135 4.135 3 H 0.098 0.902 4 C -0.006 4.006 5 N -0.333 5.333 6 C 0.299 3.701 7 O -0.402 6.402 8 C -0.026 4.026 9 N -0.099 5.099 10 C -0.138 4.138 11 N -0.157 5.157 12 N -0.078 5.078 13 N -0.050 5.050 14 C -0.065 4.065 15 C 0.060 3.940 16 H 0.094 0.906 17 N -0.351 5.351 18 C -0.384 4.384 19 H 0.091 0.909 20 C -0.202 4.202 21 N -0.574 5.574 22 Si 0.738 3.262 23 H -0.216 1.216 24 H -0.217 1.217 25 H -0.206 1.206 26 H 0.064 0.936 27 H 0.078 0.922 28 H 0.092 0.908 29 H 0.090 0.910 30 H 0.091 0.909 31 H 0.162 0.838 32 H 0.152 0.848 33 H 0.252 0.748 34 H 0.078 0.922 35 H 0.099 0.901 36 H 0.223 0.777 37 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 9.407 5.870 2.780 11.431 hybrid contribution -0.674 -1.224 -1.769 2.254 sum 8.733 4.646 1.011 9.943 Atomic orbital electron populations 1.21569 0.93148 1.03623 1.00721 1.22664 0.97213 0.98503 0.95141 0.90207 1.22334 0.81920 0.98643 0.97659 1.48352 1.11869 1.65067 1.07978 1.19636 0.84487 0.79275 0.86734 1.90825 1.82348 1.53055 1.13986 1.22019 0.87543 1.06922 0.86097 1.48190 1.30659 1.10749 1.20320 1.27749 0.93990 0.93534 0.98526 1.74966 1.21275 1.11226 1.08263 1.78643 1.09832 1.00021 1.19273 1.78995 1.10848 1.19066 0.96073 1.23512 1.02571 1.02446 0.77975 1.21170 0.87940 0.89945 0.94896 0.90602 1.42467 1.48825 1.32911 1.10922 1.19223 1.21232 1.10158 0.87755 0.90899 1.24761 0.99042 0.98713 0.97702 1.69651 1.29822 1.26035 1.31913 0.86205 0.77058 0.79082 0.83857 1.21638 1.21698 1.20627 0.93608 0.92189 0.90776 0.90954 0.90879 0.83788 0.84809 0.74839 0.92178 0.90056 0.77703 0.93225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.89 8.98 37.16 0.33 -1.55 16 2 C -0.12 -1.56 3.51 -88.47 -0.31 -1.87 16 3 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 4 C 0.12 1.68 6.33 -2.53 -0.02 1.66 16 5 N -0.60 -8.19 3.33 -170.52 -0.57 -8.76 16 6 C 0.51 7.16 7.87 -10.99 -0.09 7.08 16 7 O -0.53 -9.66 15.95 5.55 0.09 -9.57 16 8 C 0.10 0.92 6.16 -5.20 -0.03 0.89 16 9 N -0.30 -3.58 3.19 -63.74 -0.20 -3.78 16 10 C 0.16 1.68 12.79 -90.40 -1.16 0.52 16 11 N -0.31 -4.44 12.36 29.59 0.37 -4.07 16 12 N -0.08 -1.38 13.43 60.35 0.81 -0.57 16 13 N -0.06 -1.00 12.29 60.35 0.74 -0.25 16 14 C 0.06 0.78 6.23 -3.06 -0.02 0.76 16 15 C 0.17 2.68 3.39 -66.10 -0.22 2.46 16 16 H 0.08 1.15 8.09 -51.93 -0.42 0.73 16 17 N -0.71 -14.67 4.46 -51.65 -0.23 -14.90 16 18 C -0.25 -6.00 9.96 -15.06 -0.15 -6.15 16 19 H 0.07 1.66 7.83 -52.49 -0.41 1.25 16 20 C -0.01 -0.13 5.50 -17.43 -0.10 -0.23 16 21 N -0.93 -25.38 13.06 55.49 0.72 -24.66 16 22 Si 0.91 20.21 29.55 -169.99 -5.02 15.18 16 23 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 24 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 25 H -0.28 -6.08 7.11 56.52 0.40 -5.67 16 26 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 28 H 0.07 1.26 6.27 -51.93 -0.33 0.94 16 29 H 0.07 1.04 8.04 -51.93 -0.42 0.62 16 30 H 0.07 1.17 8.04 -51.93 -0.42 0.76 16 31 H 0.14 0.83 8.08 -51.93 -0.42 0.41 16 32 H 0.13 0.87 8.14 -51.92 -0.42 0.45 16 33 H 0.24 1.11 8.06 -52.48 -0.42 0.69 16 34 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 35 H 0.08 1.14 8.04 -51.93 -0.42 0.72 16 36 H 0.39 8.78 6.25 -40.82 -0.25 8.53 16 37 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 LS Contribution 317.37 15.07 4.78 4.78 Total: -1.00 -33.04 317.37 -5.02 -38.06 By element: Atomic # 1 Polarization: 9.71 SS G_CDS: -4.75 Total: 4.96 kcal Atomic # 6 Polarization: 5.33 SS G_CDS: -1.76 Total: 3.57 kcal Atomic # 7 Polarization: -58.63 SS G_CDS: 1.64 Total: -56.99 kcal Atomic # 8 Polarization: -9.66 SS G_CDS: 0.09 Total: -9.57 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -5.02 Total: 15.18 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -33.04 -5.02 -38.06 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054364513.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.252 kcal (2) G-P(sol) polarization free energy of solvation -33.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.060 kcal (6) G-S(sol) free energy of system = (1) + (5) 111.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds