Wall clock time and date at job start Tue Mar 31 2020 02:14:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 110.77624 * 2 1 4 4 C 1.54331 * 110.84650 * 236.93571 * 2 1 3 5 5 N 1.47029 * 107.26205 * 219.66816 * 4 2 1 6 6 C 1.34776 * 125.64982 * 178.84610 * 5 4 2 7 7 O 1.21281 * 120.00044 * 359.72221 * 6 5 4 8 8 C 1.50696 * 120.00170 * 179.71639 * 6 5 4 9 9 N 1.46499 * 109.47240 * 180.02562 * 8 6 5 10 10 C 1.34597 * 126.43779 * 124.99938 * 9 8 6 11 11 N 1.31072 * 106.67901 * 179.75730 * 10 9 8 12 12 N 1.28843 * 107.99150 * 0.24588 * 11 10 9 13 13 N 1.28736 * 109.39426 * 359.97438 * 12 11 10 14 14 C 1.47432 * 108.70236 * 358.58668 * 5 4 2 15 15 C 1.54907 * 104.83081 * 24.35599 * 14 5 4 16 16 H 1.08993 * 111.00747 * 81.10309 * 15 14 5 17 17 N 1.46497 * 111.00367 * 204.91640 * 15 14 5 18 18 C 1.36936 * 120.00157 * 273.54729 * 17 15 14 19 19 H 1.08002 * 119.99966 * 359.97438 * 18 17 15 20 20 C 1.38815 * 119.99972 * 179.97438 * 18 17 15 21 21 N 1.31624 * 120.00198 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 119.99807 * 180.02562 * 20 18 17 23 23 H 1.48495 * 109.47357 * 59.99607 * 22 20 18 24 24 H 1.48501 * 109.47262 * 180.02562 * 22 20 18 25 25 H 1.48508 * 109.47075 * 299.99941 * 22 20 18 26 26 H 1.09003 * 109.47272 * 296.75508 * 1 2 3 27 27 H 1.08993 * 109.47602 * 56.76168 * 1 2 3 28 28 H 1.08998 * 109.46970 * 176.76164 * 1 2 3 29 29 H 1.08995 * 109.99351 * 100.20023 * 4 2 1 30 30 H 1.09000 * 109.78429 * 339.02035 * 4 2 1 31 31 H 1.09001 * 109.47412 * 60.00363 * 8 6 5 32 32 H 1.09001 * 109.47339 * 300.00477 * 8 6 5 33 33 H 1.08002 * 126.66399 * 0.02758 * 10 9 8 34 34 H 1.08993 * 110.36447 * 143.19105 * 14 5 4 35 35 H 1.08999 * 110.36402 * 265.40909 * 14 5 4 36 36 H 0.97000 * 120.00029 * 93.54327 * 17 15 14 37 37 H 0.96988 * 119.99491 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9167 1.0192 0.0000 4 6 2.0792 -0.7869 -1.2087 5 7 3.2445 -1.5506 -0.7391 6 6 3.9923 -2.3835 -1.4898 7 8 3.7192 -2.5562 -2.6588 8 6 5.1677 -3.1000 -0.8768 9 7 5.8119 -3.9382 -1.8911 10 6 7.1094 -3.9067 -2.2478 11 7 7.2658 -4.8161 -3.1787 12 7 6.1228 -5.3732 -3.3868 13 7 5.2415 -4.8432 -2.6124 14 6 3.4633 -1.2497 0.6875 15 6 2.0790 -0.7954 1.2138 16 1 1.4455 -1.6535 1.4381 17 7 2.2215 0.0696 2.3875 18 6 2.3175 -0.4821 3.6371 19 1 2.2878 -1.5550 3.7574 20 6 2.4530 0.3375 4.7491 21 7 2.4897 1.6451 4.6025 22 14 2.5848 -0.4151 6.4537 23 1 3.7755 -1.3004 6.5132 24 1 2.7199 0.6657 7.4630 25 1 1.3629 -1.2092 6.7400 26 1 -0.3634 0.4626 0.9177 27 1 -0.3634 0.5632 -0.8595 28 1 -0.3633 -1.0260 -0.0581 29 1 2.3813 -0.0968 -1.9965 30 1 1.3155 -1.4687 -1.5829 31 1 4.8229 -3.7257 -0.0536 32 1 5.8839 -2.3688 -0.5020 33 1 7.8742 -3.2610 -1.8423 34 1 3.7960 -2.1425 1.2168 35 1 4.1946 -0.4490 0.7984 36 1 2.2478 1.0332 2.2794 37 1 2.5848 2.2177 5.3795 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054364516.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:14:25 Heat of formation + Delta-G solvation = 107.336270 kcal Electronic energy + Delta-G solvation = -21682.010608 eV Core-core repulsion = 18305.061734 eV Total energy + Delta-G solvation = -3376.948873 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.139 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -44.26957 -40.20928 -37.97849 -35.53094 -34.31515 -32.86428 -32.49404 -30.92375 -29.56018 -27.75685 -26.25892 -24.23033 -23.93674 -23.40328 -21.76191 -20.17719 -19.67018 -18.01735 -17.56249 -17.30732 -16.64487 -16.34167 -15.98479 -15.29575 -15.09543 -14.33407 -13.78122 -13.68389 -13.34484 -13.19107 -13.12756 -12.92442 -12.56795 -12.23955 -12.11930 -11.85433 -11.31013 -11.26469 -11.24079 -11.15889 -10.90088 -10.77377 -10.52657 -10.42515 -10.11870 -10.07049 -9.88334 -9.18679 -8.68369 -7.26595 -6.00362 -3.32460 1.11398 1.65928 2.17163 2.29457 2.81059 3.28767 3.34603 3.35856 3.90141 4.05608 4.15177 4.39633 4.52336 4.65039 4.77897 4.90132 5.03453 5.27280 5.35631 5.44758 5.50813 5.54914 5.64618 5.70980 5.83008 5.87397 6.00988 6.02922 6.11256 6.23824 6.26852 6.45425 6.66841 7.35969 7.47744 7.86680 8.16671 8.50720 9.29067 9.80914 10.15588 11.21103 Molecular weight = 280.14amu Principal moments of inertia in cm(-1) A = 0.020199 B = 0.004017 C = 0.003488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1385.862499 B = 6968.181191 C = 8024.571906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.113 4.113 3 H 0.086 0.914 4 C 0.118 3.882 5 N -0.605 5.605 6 C 0.514 3.486 7 O -0.525 6.525 8 C 0.099 3.901 9 N -0.297 5.297 10 C 0.159 3.841 11 N -0.310 5.310 12 N -0.083 5.083 13 N -0.062 5.062 14 C 0.063 3.937 15 C 0.178 3.822 16 H 0.068 0.932 17 N -0.709 5.709 18 C -0.255 4.255 19 H 0.072 0.928 20 C -0.004 4.004 21 N -0.927 5.927 22 Si 0.908 3.092 23 H -0.285 1.285 24 H -0.290 1.290 25 H -0.284 1.284 26 H 0.069 0.931 27 H 0.050 0.950 28 H 0.053 0.947 29 H 0.065 0.935 30 H 0.070 0.930 31 H 0.137 0.863 32 H 0.144 0.856 33 H 0.235 0.765 34 H 0.072 0.928 35 H 0.077 0.923 36 H 0.388 0.612 37 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.345 -4.176 -7.853 9.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.132 4.132 3 H 0.104 0.896 4 C -0.004 4.004 5 N -0.339 5.339 6 C 0.299 3.701 7 O -0.401 6.401 8 C -0.026 4.026 9 N -0.099 5.099 10 C -0.139 4.139 11 N -0.157 5.157 12 N -0.077 5.077 13 N -0.049 5.049 14 C -0.063 4.063 15 C 0.066 3.934 16 H 0.086 0.914 17 N -0.349 5.349 18 C -0.386 4.386 19 H 0.090 0.910 20 C -0.201 4.201 21 N -0.574 5.574 22 Si 0.738 3.262 23 H -0.211 1.211 24 H -0.216 1.216 25 H -0.211 1.211 26 H 0.088 0.912 27 H 0.069 0.931 28 H 0.072 0.928 29 H 0.084 0.916 30 H 0.088 0.912 31 H 0.155 0.845 32 H 0.162 0.838 33 H 0.251 0.749 34 H 0.090 0.910 35 H 0.095 0.905 36 H 0.223 0.777 37 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 3.800 -5.414 -9.202 11.332 hybrid contribution 0.469 0.896 1.820 2.082 sum 4.269 -4.519 -7.382 9.651 Atomic orbital electron populations 1.21671 0.93667 1.01727 1.02231 1.22496 0.96691 0.99843 0.94218 0.89576 1.22055 0.87010 0.94288 0.97061 1.48438 1.29823 1.43115 1.12567 1.19678 0.83762 0.80181 0.86500 1.90824 1.70176 1.63270 1.15822 1.22029 0.96935 0.94951 0.88733 1.48198 1.08051 1.25922 1.27778 1.27737 0.87402 1.01563 0.97222 1.74969 1.18379 1.08330 1.14030 1.78654 0.93220 1.19425 1.16410 1.79016 1.22055 1.00906 1.02883 1.23743 1.03614 1.01072 0.77878 1.21339 0.91411 0.93924 0.86767 0.91440 1.42296 1.86801 1.05164 1.00649 1.19168 1.43928 0.91884 0.83595 0.90981 1.24770 1.01954 0.95319 0.98073 1.69639 1.55893 1.02116 1.29746 0.86272 0.78014 0.77896 0.83972 1.21104 1.21576 1.21065 0.91189 0.93057 0.92766 0.91640 0.91206 0.84532 0.83829 0.74853 0.90991 0.90505 0.77749 0.93132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.70 9.16 37.16 0.34 -1.36 16 2 C -0.11 -1.51 3.16 -88.78 -0.28 -1.79 16 3 H 0.09 1.19 8.00 -51.93 -0.42 0.77 16 4 C 0.12 1.51 6.48 -3.06 -0.02 1.49 16 5 N -0.61 -7.65 3.33 -170.51 -0.57 -8.22 16 6 C 0.51 6.66 7.87 -10.99 -0.09 6.57 16 7 O -0.52 -9.03 16.02 5.56 0.09 -8.94 16 8 C 0.10 0.86 5.97 -5.20 -0.03 0.83 16 9 N -0.30 -3.42 3.20 -63.74 -0.20 -3.62 16 10 C 0.16 1.55 12.79 -90.39 -1.16 0.39 16 11 N -0.31 -4.26 12.36 29.59 0.37 -3.89 16 12 N -0.08 -1.33 13.43 60.35 0.81 -0.52 16 13 N -0.06 -0.95 12.28 60.35 0.74 -0.21 16 14 C 0.06 0.82 6.38 -2.53 -0.02 0.80 16 15 C 0.18 2.82 3.14 -65.78 -0.21 2.62 16 16 H 0.07 1.12 8.03 -51.93 -0.42 0.70 16 17 N -0.71 -14.78 5.28 -51.35 -0.27 -15.05 16 18 C -0.26 -6.10 9.98 -15.06 -0.15 -6.25 16 19 H 0.07 1.66 7.83 -52.49 -0.41 1.25 16 20 C 0.00 -0.10 5.50 -17.43 -0.10 -0.20 16 21 N -0.93 -25.24 13.06 55.49 0.72 -24.51 16 22 Si 0.91 20.22 29.55 -169.99 -5.02 15.20 16 23 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 24 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 25 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 26 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 27 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.05 0.65 8.07 -51.93 -0.42 0.23 16 29 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.07 0.90 7.77 -51.93 -0.40 0.50 16 31 H 0.14 0.94 7.85 -51.93 -0.41 0.54 16 32 H 0.14 0.67 8.08 -51.93 -0.42 0.25 16 33 H 0.24 0.88 8.06 -52.49 -0.42 0.46 16 34 H 0.07 0.84 7.48 -51.93 -0.39 0.45 16 35 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.39 8.76 7.71 -40.82 -0.31 8.44 16 37 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 LS Contribution 319.99 15.07 4.82 4.82 Total: -1.00 -32.81 319.99 -5.06 -37.87 By element: Atomic # 1 Polarization: 8.82 SS G_CDS: -4.84 Total: 3.98 kcal Atomic # 6 Polarization: 4.81 SS G_CDS: -1.70 Total: 3.11 kcal Atomic # 7 Polarization: -57.63 SS G_CDS: 1.60 Total: -56.03 kcal Atomic # 8 Polarization: -9.03 SS G_CDS: 0.09 Total: -8.94 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -5.02 Total: 15.20 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -32.81 -5.06 -37.87 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054364516.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.203 kcal (2) G-P(sol) polarization free energy of solvation -32.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.867 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds