Wall clock time and date at job start Tue Mar 31 2020 02:14:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08992 * 110.88846 * 2 1 4 4 C 1.54909 * 111.00534 * 123.88579 * 2 1 3 5 5 N 1.47418 * 104.83184 * 155.08374 * 4 2 1 6 6 C 1.34777 * 125.65118 * 155.90958 * 5 4 2 7 7 O 1.21284 * 119.99692 * 359.97438 * 6 5 4 8 8 C 1.50697 * 120.00494 * 179.97438 * 6 5 4 9 9 N 1.46494 * 109.47512 * 179.97438 * 8 6 5 10 10 N 1.28890 * 125.45180 * 269.72115 * 9 8 6 11 11 C 1.31042 * 107.91464 * 179.89580 * 10 9 8 12 12 N 1.33320 * 106.90112 * 0.35682 * 11 10 9 13 13 N 1.28781 * 125.44748 * 90.02229 * 9 8 6 14 14 C 1.47024 * 108.70570 * 335.86900 * 5 4 2 15 15 C 1.54326 * 107.26637 * 1.05952 * 14 5 4 16 16 H 1.08999 * 110.71537 * 140.55908 * 15 14 5 17 17 N 1.46500 * 110.72191 * 263.82679 * 15 14 5 18 18 C 1.36938 * 120.00536 * 268.52549 * 17 15 14 19 19 H 1.08002 * 119.99518 * 359.97438 * 18 17 15 20 20 C 1.38806 * 120.00413 * 179.97438 * 18 17 15 21 21 N 1.31620 * 119.99848 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 120.00134 * 180.02562 * 20 18 17 23 23 H 1.48494 * 109.47272 * 89.99701 * 22 20 18 24 24 H 1.48502 * 109.47075 * 210.00125 * 22 20 18 25 25 H 1.48502 * 109.46959 * 329.99514 * 22 20 18 26 26 H 1.09001 * 109.47002 * 297.56794 * 1 2 3 27 27 H 1.08993 * 109.46955 * 57.57232 * 1 2 3 28 28 H 1.09000 * 109.47050 * 177.57060 * 1 2 3 29 29 H 1.09003 * 110.36235 * 273.92057 * 4 2 1 30 30 H 1.09000 * 110.36734 * 36.24379 * 4 2 1 31 31 H 1.09000 * 109.46834 * 300.00156 * 8 6 5 32 32 H 1.09005 * 109.46889 * 59.99263 * 8 6 5 33 33 H 1.08004 * 126.54327 * 180.13870 * 11 10 9 34 34 H 1.08996 * 109.88300 * 120.48004 * 14 5 4 35 35 H 1.09001 * 109.88002 * 241.49547 * 14 5 4 36 36 H 0.97006 * 120.00063 * 88.52291 * 17 15 14 37 37 H 0.97004 * 120.00013 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9187 1.0183 0.0000 4 6 2.0853 -0.8063 1.2005 5 7 3.4272 -1.2428 0.7737 6 6 4.4477 -1.5611 1.5944 7 8 4.3010 -1.4991 2.7967 8 6 5.7712 -1.9941 1.0182 9 7 6.7076 -2.2814 2.1076 10 7 7.5105 -1.4298 2.6474 11 6 8.1853 -2.0497 3.5841 12 7 7.7678 -3.3158 3.5893 13 7 6.8640 -3.4266 2.6755 14 6 3.4675 -1.2744 -0.6957 15 6 2.0861 -0.8083 -1.2020 16 1 2.1922 -0.1707 -2.0796 17 7 1.2268 -1.9579 -1.4956 18 6 1.2056 -2.4928 -2.7560 19 1 1.8222 -2.0669 -3.5337 20 6 0.3918 -3.5824 -3.0340 21 7 -0.3600 -4.1011 -2.0863 22 14 0.3636 -4.3125 -4.7532 23 1 1.3974 -5.3733 -4.8575 24 1 -0.9749 -4.8976 -5.0206 25 1 0.6456 -3.2468 -5.7483 26 1 -0.3633 0.4756 0.9110 27 1 -0.3633 0.5510 -0.8674 28 1 -0.3633 -1.0267 -0.0436 29 1 2.1561 -0.1713 2.0837 30 1 1.4520 -1.6700 1.4029 31 1 5.6289 -2.8908 0.4150 32 1 6.1741 -1.1965 0.3940 33 1 8.9386 -1.6182 4.2266 34 1 4.2426 -0.6001 -1.0598 35 1 3.6677 -2.2892 -1.0393 36 1 0.6727 -2.3402 -0.7972 37 1 -0.9284 -4.8627 -2.2805 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054646792.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:14:32 Heat of formation + Delta-G solvation = 120.785368 kcal Electronic energy + Delta-G solvation = -21913.476603 eV Core-core repulsion = 18537.110926 eV Total energy + Delta-G solvation = -3376.365677 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.139 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -44.36910 -40.12072 -37.94826 -34.99569 -34.16255 -33.13407 -32.59264 -30.65614 -29.54205 -27.91995 -26.15523 -24.02926 -23.99755 -23.25293 -22.18340 -19.68909 -19.45401 -18.07901 -17.78283 -17.30515 -16.37966 -16.11134 -15.81825 -15.02728 -14.70517 -14.49939 -13.99095 -13.83237 -13.41750 -13.17914 -13.05867 -12.59473 -12.33675 -12.07320 -11.99333 -11.72227 -11.24589 -11.19261 -11.03679 -11.01483 -10.89468 -10.69730 -10.58589 -10.35719 -10.08663 -9.91123 -9.75851 -9.13562 -8.56506 -7.20044 -5.94351 -3.25756 1.12661 1.68730 2.20111 2.40144 2.98487 3.32886 3.38478 3.40854 3.98494 4.18607 4.31426 4.43311 4.61029 4.83348 4.86682 4.99369 5.21097 5.35698 5.50506 5.60200 5.61855 5.67307 5.74840 5.81555 5.96323 6.01500 6.10485 6.17692 6.22670 6.32013 6.40541 6.58289 6.84464 7.48599 7.53551 7.95758 8.22873 8.30729 9.35120 9.87967 10.22280 11.27326 Molecular weight = 280.14amu Principal moments of inertia in cm(-1) A = 0.020923 B = 0.004229 C = 0.003754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1337.941027 B = 6619.466280 C = 7457.079793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.115 4.115 3 H 0.080 0.920 4 C 0.116 3.884 5 N -0.597 5.597 6 C 0.517 3.483 7 O -0.536 6.536 8 C 0.114 3.886 9 N -0.122 5.122 10 N -0.304 5.304 11 C 0.141 3.859 12 N -0.289 5.289 13 N -0.046 5.046 14 C 0.059 3.941 15 C 0.174 3.826 16 H 0.077 0.923 17 N -0.710 5.710 18 C -0.253 4.253 19 H 0.073 0.927 20 C -0.005 4.005 21 N -0.927 5.927 22 Si 0.907 3.093 23 H -0.289 1.289 24 H -0.291 1.291 25 H -0.281 1.281 26 H 0.045 0.955 27 H 0.059 0.941 28 H 0.074 0.926 29 H 0.071 0.929 30 H 0.074 0.926 31 H 0.149 0.851 32 H 0.144 0.856 33 H 0.235 0.765 34 H 0.061 0.939 35 H 0.083 0.917 36 H 0.387 0.613 37 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.065 8.669 4.470 14.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.135 4.135 3 H 0.098 0.902 4 C -0.006 4.006 5 N -0.330 5.330 6 C 0.302 3.698 7 O -0.414 6.414 8 C -0.010 4.010 9 N -0.034 5.034 10 N -0.153 5.153 11 C -0.162 4.162 12 N -0.160 5.160 13 N -0.040 5.040 14 C -0.067 4.067 15 C 0.061 3.939 16 H 0.095 0.905 17 N -0.351 5.351 18 C -0.384 4.384 19 H 0.091 0.909 20 C -0.202 4.202 21 N -0.574 5.574 22 Si 0.738 3.262 23 H -0.216 1.216 24 H -0.217 1.217 25 H -0.206 1.206 26 H 0.064 0.936 27 H 0.078 0.922 28 H 0.093 0.907 29 H 0.090 0.910 30 H 0.092 0.908 31 H 0.166 0.834 32 H 0.162 0.838 33 H 0.251 0.749 34 H 0.079 0.921 35 H 0.101 0.899 36 H 0.223 0.777 37 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 10.617 8.157 4.676 14.182 hybrid contribution 0.189 -0.220 -0.527 0.602 sum 10.806 7.937 4.148 14.034 Atomic orbital electron populations 1.21569 0.93126 1.03664 1.00692 1.22664 0.97223 0.98468 0.95149 0.90210 1.22348 0.81910 0.98690 0.97624 1.48332 1.11813 1.64791 1.08064 1.19701 0.84563 0.78875 0.86663 1.90786 1.82713 1.53681 1.14198 1.22019 0.86565 1.07158 0.85267 1.49533 1.24759 1.04034 1.25068 1.74680 1.06226 1.22144 1.12259 1.27315 1.02111 0.88714 0.98065 1.75879 1.07970 1.18385 1.13736 1.79038 1.12606 1.07967 1.04433 1.23554 1.02626 1.02650 0.77834 1.21167 0.87897 0.89965 0.94868 0.90544 1.42467 1.48788 1.32906 1.10942 1.19220 1.21215 1.10209 0.87729 0.90890 1.24762 0.99063 0.98681 0.97708 1.69651 1.29821 1.26014 1.31900 0.86203 0.77039 0.79102 0.83848 1.21607 1.21718 1.20647 0.93637 0.92171 0.90737 0.91025 0.90762 0.83378 0.83810 0.74884 0.92087 0.89907 0.77687 0.93231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.92 8.98 37.16 0.33 -1.59 16 2 C -0.11 -1.59 3.51 -88.47 -0.31 -1.91 16 3 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 4 C 0.12 1.74 6.33 -2.53 -0.02 1.72 16 5 N -0.60 -8.69 3.33 -170.52 -0.57 -9.25 16 6 C 0.52 7.84 7.92 -10.99 -0.09 7.75 16 7 O -0.54 -10.31 16.69 5.55 0.09 -10.22 16 8 C 0.11 1.31 6.28 -5.20 -0.03 1.27 16 9 N -0.12 -1.72 3.49 -11.72 -0.04 -1.77 16 10 N -0.30 -4.09 12.13 29.34 0.36 -3.73 16 11 C 0.14 1.67 13.26 -91.58 -1.21 0.46 16 12 N -0.29 -4.26 12.50 29.33 0.37 -3.90 16 13 N -0.05 -0.73 13.25 60.35 0.80 0.07 16 14 C 0.06 0.81 6.23 -3.06 -0.02 0.79 16 15 C 0.17 2.78 3.39 -66.10 -0.22 2.56 16 16 H 0.08 1.19 8.09 -51.93 -0.42 0.77 16 17 N -0.71 -15.12 4.46 -51.65 -0.23 -15.35 16 18 C -0.25 -6.16 9.96 -15.06 -0.15 -6.31 16 19 H 0.07 1.70 7.83 -52.49 -0.41 1.29 16 20 C -0.01 -0.13 5.50 -17.43 -0.10 -0.23 16 21 N -0.93 -25.94 13.06 55.49 0.72 -25.21 16 22 Si 0.91 20.71 29.55 -169.99 -5.02 15.69 16 23 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 24 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 25 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 26 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 28 H 0.07 1.29 6.27 -51.93 -0.33 0.97 16 29 H 0.07 1.05 8.04 -51.93 -0.42 0.63 16 30 H 0.07 1.24 8.04 -51.93 -0.42 0.82 16 31 H 0.15 1.40 8.14 -51.93 -0.42 0.98 16 32 H 0.14 1.15 8.14 -51.93 -0.42 0.73 16 33 H 0.24 1.54 8.06 -52.48 -0.42 1.12 16 34 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.08 1.26 8.05 -51.93 -0.42 0.84 16 36 H 0.39 9.03 6.25 -40.82 -0.25 8.77 16 37 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 LS Contribution 318.91 15.07 4.81 4.81 Total: -1.00 -32.51 318.91 -5.29 -37.80 By element: Atomic # 1 Polarization: 11.30 SS G_CDS: -4.76 Total: 6.54 kcal Atomic # 6 Polarization: 6.34 SS G_CDS: -1.82 Total: 4.52 kcal Atomic # 7 Polarization: -60.55 SS G_CDS: 1.41 Total: -59.14 kcal Atomic # 8 Polarization: -10.31 SS G_CDS: 0.09 Total: -10.22 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -32.51 -5.29 -37.80 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054646792.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.582 kcal (2) G-P(sol) polarization free energy of solvation -32.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 126.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.797 kcal (6) G-S(sol) free energy of system = (1) + (5) 120.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds