Wall clock time and date at job start Tue Mar 31 2020 02:14:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 110.88683 * 2 1 4 4 C 1.55129 * 110.93700 * 124.07416 * 2 1 3 5 5 N 1.47426 * 104.72100 * 155.29347 * 4 2 1 6 6 C 1.34780 * 125.64713 * 155.82001 * 5 4 2 7 7 O 1.21534 * 119.99966 * 359.71163 * 6 5 4 8 8 C 1.48003 * 119.99957 * 179.71512 * 6 5 4 9 9 N 1.34189 * 126.69980 * 359.96993 * 8 6 5 10 10 N 1.28978 * 107.25368 * 180.02562 * 9 8 6 11 11 N 1.28716 * 108.98909 * 0.02562 * 10 9 8 12 12 C 1.46497 * 125.32272 * 179.97438 * 11 10 9 13 13 N 1.28874 * 109.36013 * 359.97438 * 11 10 9 14 14 C 1.47017 * 108.70233 * 335.55252 * 5 4 2 15 15 C 1.54322 * 107.27336 * 1.28654 * 14 5 4 16 16 H 1.08998 * 110.72079 * 140.55604 * 15 14 5 17 17 N 1.46496 * 110.72301 * 263.83164 * 15 14 5 18 18 C 1.36933 * 120.00301 * 273.54792 * 17 15 14 19 19 H 1.08010 * 119.99675 * 359.97438 * 18 17 15 20 20 C 1.38817 * 120.00580 * 180.02562 * 18 17 15 21 21 N 1.31619 * 119.99304 * 359.97438 * 20 18 17 22 22 Si 1.86795 * 120.00248 * 179.97438 * 20 18 17 23 23 H 1.48496 * 109.47190 * 59.99643 * 22 20 18 24 24 H 1.48498 * 109.47191 * 180.02562 * 22 20 18 25 25 H 1.48503 * 109.46759 * 299.99708 * 22 20 18 26 26 H 1.08997 * 109.47220 * 183.87877 * 1 2 3 27 27 H 1.08992 * 109.47508 * 303.88285 * 1 2 3 28 28 H 1.09001 * 109.47042 * 63.88150 * 1 2 3 29 29 H 1.08994 * 110.49975 * 36.44530 * 4 2 1 30 30 H 1.09004 * 110.34215 * 274.05354 * 4 2 1 31 31 H 1.08995 * 109.47480 * 270.02539 * 12 11 10 32 32 H 1.08998 * 109.47161 * 30.02536 * 12 11 10 33 33 H 1.09004 * 109.47489 * 150.01743 * 12 11 10 34 34 H 1.08997 * 109.88344 * 120.71119 * 14 5 4 35 35 H 1.09003 * 109.88087 * 241.87480 * 14 5 4 36 36 H 0.97004 * 119.99928 * 93.53964 * 17 15 14 37 37 H 0.96999 * 119.99478 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0184 0.0000 4 6 2.0843 -0.8117 1.2001 5 7 3.4280 -1.2421 0.7726 6 6 4.4489 -1.5602 1.5930 7 8 4.3021 -1.4987 2.7979 8 6 5.7488 -1.9844 1.0266 9 7 6.0575 -2.0996 -0.2742 10 7 7.2834 -2.4945 -0.3430 11 7 7.7475 -2.6295 0.8500 12 6 9.1059 -3.0627 1.1864 13 7 6.8304 -2.3241 1.7023 14 6 3.4679 -1.2730 -0.6967 15 6 2.0862 -0.8075 -1.2025 16 1 2.1916 -0.1694 -2.0798 17 7 1.2274 -1.9574 -1.4963 18 6 1.2821 -2.5562 -2.7265 19 1 1.9581 -2.1804 -3.4804 20 6 0.4679 -3.6454 -3.0052 21 7 -0.3562 -4.1030 -2.0866 22 14 0.5420 -4.4618 -4.6837 23 1 1.9162 -4.9694 -4.9270 24 1 -0.4190 -5.5930 -4.7269 25 1 0.1873 -3.4714 -5.7318 26 1 -0.3633 -1.0253 0.0695 27 1 -0.3634 0.5729 0.8531 28 1 -0.3633 0.4524 -0.9227 29 1 1.4537 -1.6783 1.3987 30 1 2.1522 -0.1800 2.0858 31 1 9.1281 -4.1483 1.2812 32 1 9.7918 -2.7527 0.3981 33 1 9.4086 -2.6093 2.1303 34 1 4.2426 -0.5982 -1.0608 35 1 3.6658 -2.2881 -1.0409 36 1 0.6201 -2.2947 -0.8193 37 1 -0.9254 -4.8639 -2.2814 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054981274.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:14:02 Heat of formation + Delta-G solvation = 99.657646 kcal Electronic energy + Delta-G solvation = -22144.147187 eV Core-core repulsion = 18766.865343 eV Total energy + Delta-G solvation = -3377.281844 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.139 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -45.56470 -41.21358 -39.12256 -36.37414 -35.70453 -34.38004 -33.92586 -32.21758 -29.96747 -29.36073 -27.87106 -26.02248 -25.60845 -24.01791 -23.51482 -21.26121 -20.71207 -19.48004 -18.82265 -18.75870 -17.76041 -17.45122 -16.84109 -16.45225 -15.87162 -15.48787 -15.26062 -14.75434 -14.53411 -14.46268 -14.18194 -14.06475 -13.56342 -13.34910 -13.19210 -13.02456 -12.85145 -12.73925 -12.37645 -12.27761 -12.25846 -12.15575 -11.93243 -11.64671 -11.50737 -11.41622 -11.30888 -10.91694 -9.80801 -8.98032 -7.89187 -5.16677 -0.21691 0.24499 0.79428 1.51147 1.53055 1.58481 1.62243 1.83824 2.60391 2.69246 3.00424 3.41987 3.57649 3.85926 3.91806 3.97615 4.02938 4.11709 4.21735 4.44361 4.49240 4.58460 4.64279 4.68528 4.74941 4.92018 4.97176 5.03391 5.04188 5.15471 5.27680 5.37026 5.58877 5.64402 6.21246 6.32588 6.66345 7.01741 7.40523 8.14338 8.37743 9.33876 Molecular weight = 280.14amu Principal moments of inertia in cm(-1) A = 0.016013 B = 0.005375 C = 0.004316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1748.173079 B = 5207.735295 C = 6486.545633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.097 4.097 3 H 0.115 0.885 4 C 0.115 3.885 5 N -0.583 5.583 6 C 0.622 3.378 7 O -0.551 6.551 8 C 0.118 3.882 9 N -0.263 5.263 10 N -0.065 5.065 11 N -0.114 5.114 12 C 0.072 3.928 13 N -0.261 5.261 14 C 0.091 3.909 15 C 0.162 3.838 16 H 0.084 0.916 17 N -0.721 5.721 18 C -0.235 4.235 19 H 0.080 0.920 20 C -0.071 4.071 21 N -0.968 5.968 22 Si 0.965 3.035 23 H -0.284 1.284 24 H -0.301 1.301 25 H -0.275 1.275 26 H 0.038 0.962 27 H 0.075 0.925 28 H 0.058 0.942 29 H 0.058 0.942 30 H 0.093 0.907 31 H 0.127 0.873 32 H 0.144 0.856 33 H 0.135 0.865 34 H 0.082 0.918 35 H 0.054 0.946 36 H 0.377 0.623 37 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.651 7.372 6.049 19.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.117 4.117 3 H 0.133 0.867 4 C -0.006 4.006 5 N -0.315 5.315 6 C 0.405 3.595 7 O -0.427 6.427 8 C -0.166 4.166 9 N -0.137 5.137 10 N -0.059 5.059 11 N -0.030 5.030 12 C -0.064 4.064 13 N -0.116 5.116 14 C -0.035 4.035 15 C 0.051 3.949 16 H 0.102 0.898 17 N -0.361 5.361 18 C -0.367 4.367 19 H 0.098 0.902 20 C -0.263 4.263 21 N -0.619 5.619 22 Si 0.795 3.205 23 H -0.210 1.210 24 H -0.227 1.227 25 H -0.201 1.201 26 H 0.057 0.943 27 H 0.094 0.906 28 H 0.078 0.922 29 H 0.076 0.924 30 H 0.111 0.889 31 H 0.146 0.854 32 H 0.162 0.838 33 H 0.153 0.847 34 H 0.100 0.900 35 H 0.072 0.928 36 H 0.211 0.789 37 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 17.131 7.188 6.102 19.554 hybrid contribution -0.549 -1.142 -0.294 1.301 sum 16.582 6.046 5.808 18.581 Atomic orbital electron populations 1.21474 0.92961 1.01536 1.02268 1.22661 0.97077 0.99357 0.92578 0.86663 1.22530 0.80595 0.98547 0.98938 1.48216 1.11520 1.63213 1.08502 1.15843 0.80583 0.78313 0.84793 1.90782 1.82471 1.55337 1.14145 1.25004 0.96727 1.06783 0.88054 1.76309 1.04740 1.15348 1.17274 1.78880 1.04684 1.15063 1.07239 1.50863 1.14161 1.37188 1.00765 1.23281 0.71009 1.04701 1.07417 1.75008 0.97970 1.16762 1.21900 1.23177 1.01159 1.01959 0.77177 1.21515 0.87897 0.88883 0.96574 0.89797 1.42583 1.45975 1.33953 1.13603 1.19595 1.16911 1.08625 0.91521 0.90238 1.25434 0.99707 1.00211 1.00981 1.69801 1.28861 1.28253 1.34997 0.85329 0.76752 0.77786 0.80606 1.21016 1.22731 1.20121 0.94251 0.90592 0.92249 0.92370 0.88900 0.85443 0.83758 0.84697 0.90010 0.92752 0.78938 0.94284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.65 8.85 71.98 0.64 -3.02 16 2 C -0.10 -2.82 3.53 -9.33 -0.03 -2.86 16 3 H 0.12 2.67 8.14 -2.38 -0.02 2.65 16 4 C 0.12 3.70 6.36 86.93 0.55 4.25 16 5 N -0.58 -20.76 3.32 -814.59 -2.71 -23.47 16 6 C 0.62 23.45 7.87 86.83 0.68 24.13 16 7 O -0.55 -22.82 17.35 -3.82 -0.07 -22.89 16 8 C 0.12 4.10 7.97 137.15 1.09 5.19 16 9 N -0.26 -8.94 10.09 -52.37 -0.53 -9.47 16 10 N -0.07 -1.83 13.23 37.02 0.49 -1.34 16 11 N -0.11 -2.56 4.39 -206.59 -0.91 -3.47 16 12 C 0.07 0.49 11.62 127.77 1.49 1.98 16 13 N -0.26 -7.81 12.17 -52.32 -0.64 -8.44 16 14 C 0.09 3.27 5.28 86.73 0.46 3.72 16 15 C 0.16 5.88 3.36 46.18 0.16 6.03 16 16 H 0.08 2.90 8.12 -2.39 -0.02 2.88 16 17 N -0.72 -34.02 4.61 -317.33 -1.46 -35.48 16 18 C -0.23 -12.44 9.98 84.04 0.84 -11.60 16 19 H 0.08 4.02 7.83 -2.91 -0.02 4.00 16 20 C -0.07 -3.98 5.50 84.86 0.47 -3.52 16 21 N -0.97 -58.32 13.06 21.65 0.28 -58.04 16 22 Si 0.97 45.71 29.55 68.60 2.03 47.74 16 23 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 24 H -0.30 -14.54 7.11 99.48 0.71 -13.84 16 25 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 26 H 0.04 1.41 6.38 -2.39 -0.02 1.39 16 27 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 28 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 29 H 0.06 2.09 7.99 -2.39 -0.02 2.07 16 30 H 0.09 2.66 8.03 -2.38 -0.02 2.64 16 31 H 0.13 0.41 8.14 -2.39 -0.02 0.39 16 32 H 0.14 0.20 8.14 -2.39 -0.02 0.18 16 33 H 0.13 0.40 8.14 -2.39 -0.02 0.38 16 34 H 0.08 2.67 7.66 -2.39 -0.02 2.65 16 35 H 0.05 2.34 7.67 -2.39 -0.02 2.32 16 36 H 0.38 19.28 6.10 -92.71 -0.57 18.72 16 37 H 0.25 14.72 8.31 -92.71 -0.77 13.95 16 Total: -1.00 -74.21 316.36 3.36 -70.85 By element: Atomic # 1 Polarization: 19.17 SS G_CDS: 0.54 Total: 19.70 kcal Atomic # 6 Polarization: 17.98 SS G_CDS: 6.34 Total: 24.32 kcal Atomic # 7 Polarization: -134.24 SS G_CDS: -5.47 Total: -139.71 kcal Atomic # 8 Polarization: -22.82 SS G_CDS: -0.07 Total: -22.89 kcal Atomic # 14 Polarization: 45.71 SS G_CDS: 2.03 Total: 47.74 kcal Total: -74.21 3.36 -70.85 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054981274.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.503 kcal (2) G-P(sol) polarization free energy of solvation -74.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.846 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds