Wall clock time and date at job start Tue Mar 31 2020 02:14:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09003 * 110.78000 * 2 1 4 4 C 1.54320 * 110.71978 * 236.75756 * 2 1 3 5 5 N 1.47023 * 107.27059 * 219.44556 * 4 2 1 6 6 C 1.36935 * 125.64638 * 178.99050 * 5 4 2 7 7 H 1.08004 * 120.00347 * 359.97438 * 6 5 4 8 8 C 1.38813 * 119.99991 * 179.97438 * 6 5 4 9 9 N 1.31621 * 119.99794 * 0.02562 * 8 6 5 10 10 Si 1.86798 * 119.99944 * 179.97438 * 8 6 5 11 11 H 1.48499 * 109.46988 * 60.00507 * 10 8 6 12 12 H 1.48500 * 109.46948 * 180.02562 * 10 8 6 13 13 H 1.48500 * 109.47511 * 300.00167 * 10 8 6 14 14 C 1.47423 * 108.70369 * 358.94261 * 5 4 2 15 15 C 1.54909 * 104.83342 * 24.12712 * 14 5 4 16 16 H 1.09003 * 111.03280 * 81.07712 * 15 14 5 17 17 N 1.46497 * 111.00676 * 204.91890 * 15 14 5 18 18 C 1.34780 * 119.99566 * 267.20003 * 17 15 14 19 19 O 1.21280 * 120.00423 * 359.97438 * 18 17 15 20 20 C 1.50701 * 119.99795 * 180.02562 * 18 17 15 21 21 N 1.46499 * 109.46992 * 179.97438 * 20 18 17 22 22 N 1.28877 * 125.45078 * 269.71474 * 21 20 18 23 23 C 1.31044 * 107.91915 * 179.89877 * 22 21 20 24 24 N 1.33319 * 106.89974 * 0.36122 * 23 22 21 25 25 N 1.28784 * 125.44648 * 90.02505 * 21 20 18 26 26 H 1.08999 * 109.46940 * 296.76711 * 1 2 3 27 27 H 1.08999 * 109.46774 * 56.76294 * 1 2 3 28 28 H 1.08993 * 109.47159 * 176.76166 * 1 2 3 29 29 H 1.08999 * 109.88378 * 338.86511 * 4 2 1 30 30 H 1.08997 * 109.87867 * 100.02800 * 4 2 1 31 31 H 0.97003 * 119.99773 * 179.97438 * 9 8 6 32 32 H 1.08999 * 110.36333 * 265.28907 * 14 5 4 33 33 H 1.08993 * 110.36509 * 142.97167 * 14 5 4 34 34 H 0.96995 * 120.00423 * 87.19308 * 17 15 14 35 35 H 1.09002 * 109.47060 * 299.99722 * 20 18 17 36 36 H 1.09001 * 109.47380 * 59.99809 * 20 18 17 37 37 H 1.07998 * 126.55209 * 180.14075 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9168 1.0191 0.0000 4 6 2.0760 -0.7912 -1.2072 5 7 3.2445 -1.5508 -0.7389 6 6 4.0044 -2.3968 -1.5017 7 1 3.7614 -2.5507 -2.5427 8 6 5.0872 -3.0569 -0.9370 9 7 5.3831 -2.8698 0.3319 10 14 6.1233 -4.2115 -1.9774 11 1 6.7145 -3.4588 -3.1127 12 1 7.2102 -4.7870 -1.1450 13 1 5.2688 -5.3072 -2.5013 14 6 3.4633 -1.2498 0.6876 15 6 2.0790 -0.7954 1.2139 16 1 1.4448 -1.6532 1.4380 17 7 2.2214 0.0697 2.3875 18 6 2.1873 -0.4628 3.6252 19 8 2.0382 -1.6579 3.7674 20 6 2.3332 0.4272 4.8326 21 7 2.2623 -0.3853 6.0495 22 7 1.1857 -0.6628 6.7014 23 6 1.5161 -1.4091 7.7265 24 7 2.8387 -1.5696 7.6789 25 7 3.2665 -0.9318 6.6423 26 1 -0.3633 0.4628 0.9175 27 1 -0.3633 0.5633 -0.8596 28 1 -0.3633 -1.0260 -0.0580 29 1 1.3130 -1.4758 -1.5775 30 1 2.3741 -0.1025 -1.9976 31 1 6.1395 -3.3313 0.7266 32 1 4.1931 -0.4479 0.7985 33 1 3.7960 -2.1426 1.2170 34 1 2.3404 1.0256 2.2739 35 1 3.2948 0.9391 4.7926 36 1 1.5297 1.1637 4.8405 37 1 0.8456 -1.8138 8.4702 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001079702533.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:14:50 Heat of formation + Delta-G solvation = 129.476404 kcal Electronic energy + Delta-G solvation = -21965.329005 eV Core-core repulsion = 18589.340200 eV Total energy + Delta-G solvation = -3375.988805 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.139 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -44.32082 -39.83908 -37.74076 -34.95236 -34.14758 -33.08218 -32.78510 -30.42919 -29.73307 -27.55682 -25.69593 -24.02345 -23.93908 -23.02218 -20.99300 -20.29701 -19.75549 -17.95820 -17.92902 -16.97961 -16.28047 -16.01545 -15.56811 -15.20021 -14.79534 -14.04924 -13.84408 -13.77452 -13.17261 -13.03158 -12.89061 -12.56161 -12.32220 -11.95653 -11.79707 -11.32400 -11.15009 -11.14323 -10.98576 -10.83683 -10.75611 -10.61947 -10.46987 -10.05999 -9.87898 -9.85104 -9.70759 -8.70473 -8.67289 -6.89087 -5.67096 -3.11038 1.17243 1.73448 2.25358 2.50819 3.14403 3.40343 3.44434 3.46743 4.01221 4.34896 4.43301 4.50412 4.54381 4.85821 5.01401 5.21927 5.33665 5.49337 5.65686 5.66537 5.72027 5.85861 5.92951 6.01526 6.05183 6.12088 6.28663 6.35521 6.56616 6.60495 6.83510 7.29454 7.53547 7.60503 7.82980 8.18205 8.33034 8.35412 9.17531 9.78946 10.41049 11.36126 Molecular weight = 280.14amu Principal moments of inertia in cm(-1) A = 0.018292 B = 0.004655 C = 0.003861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1530.331682 B = 6012.960538 C = 7249.952537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.111 4.111 3 H 0.075 0.925 4 C 0.141 3.859 5 N -0.602 5.602 6 C -0.230 4.230 7 H 0.079 0.921 8 C -0.008 4.008 9 N -0.919 5.919 10 Si 0.916 3.084 11 H -0.285 1.285 12 H -0.289 1.289 13 H -0.284 1.284 14 C 0.148 3.852 15 C 0.119 3.881 16 H 0.095 0.905 17 N -0.702 5.702 18 C 0.501 3.499 19 O -0.514 6.514 20 C 0.109 3.891 21 N -0.123 5.123 22 N -0.304 5.304 23 C 0.142 3.858 24 N -0.288 5.288 25 N -0.044 5.044 26 H 0.050 0.950 27 H 0.054 0.946 28 H 0.056 0.944 29 H 0.028 0.972 30 H 0.025 0.975 31 H 0.254 0.746 32 H 0.015 0.985 33 H 0.112 0.888 34 H 0.398 0.602 35 H 0.147 0.853 36 H 0.143 0.857 37 H 0.235 0.765 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.790 11.483 8.737 17.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.130 4.130 3 H 0.094 0.906 4 C 0.015 3.985 5 N -0.329 5.329 6 C -0.358 4.358 7 H 0.097 0.903 8 C -0.204 4.204 9 N -0.567 5.567 10 Si 0.746 3.254 11 H -0.211 1.211 12 H -0.215 1.215 13 H -0.211 1.211 14 C 0.022 3.978 15 C 0.014 3.986 16 H 0.113 0.887 17 N -0.353 5.353 18 C 0.283 3.717 19 O -0.389 6.389 20 C -0.016 4.016 21 N -0.035 5.035 22 N -0.154 5.154 23 C -0.161 4.161 24 N -0.159 5.159 25 N -0.038 5.038 26 H 0.069 0.931 27 H 0.073 0.927 28 H 0.076 0.924 29 H 0.046 0.954 30 H 0.043 0.957 31 H 0.065 0.935 32 H 0.033 0.967 33 H 0.130 0.870 34 H 0.232 0.768 35 H 0.165 0.835 36 H 0.161 0.839 37 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -9.146 10.592 8.524 16.386 hybrid contribution 0.107 -0.154 -0.398 0.440 sum -9.039 10.438 8.126 16.022 Atomic orbital electron populations 1.21748 0.94852 1.01999 1.00947 1.22444 0.95293 0.99190 0.96098 0.90635 1.21349 0.90303 0.93208 0.93685 1.44362 1.30900 1.50559 1.07060 1.19018 1.06366 1.17505 0.92926 0.90316 1.24823 0.98728 1.00449 0.96394 1.69765 1.30039 1.45974 1.10877 0.86140 0.79756 0.80604 0.78908 1.21150 1.21498 1.21062 1.22238 0.89038 1.01244 0.85271 1.22828 1.01501 0.92306 0.81953 0.88746 1.45705 1.73199 1.11320 1.05094 1.20072 0.78367 0.88924 0.84353 1.90850 1.47578 1.14849 1.85597 1.22051 1.08753 0.92275 0.78491 1.49480 1.01665 1.32879 1.19455 1.74662 1.13947 1.18908 1.07888 1.27306 0.92596 0.98491 0.97729 1.75890 1.10451 1.17458 1.12068 1.79056 1.15521 1.06796 1.02424 0.93103 0.92739 0.92441 0.95411 0.95740 0.93480 0.96714 0.87041 0.76758 0.83535 0.83914 0.74917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.73 9.16 37.16 0.34 -1.39 16 2 C -0.11 -1.70 3.20 -88.78 -0.28 -1.99 16 3 H 0.08 1.02 8.00 -51.93 -0.42 0.60 16 4 C 0.14 2.78 6.84 -3.07 -0.02 2.76 16 5 N -0.60 -15.18 3.39 -170.08 -0.58 -15.76 16 6 C -0.23 -6.40 10.27 -15.06 -0.15 -6.55 16 7 H 0.08 2.10 7.83 -52.48 -0.41 1.69 16 8 C -0.01 -0.22 5.49 -17.43 -0.10 -0.32 16 9 N -0.92 -27.31 10.09 55.49 0.56 -26.75 16 10 Si 0.92 22.27 29.55 -169.99 -5.02 17.25 16 11 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 12 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 13 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 14 C 0.15 3.53 5.58 -2.53 -0.01 3.52 16 15 C 0.12 2.14 2.87 -65.78 -0.19 1.95 16 16 H 0.09 1.94 7.44 -51.93 -0.39 1.56 16 17 N -0.70 -9.44 5.20 -51.73 -0.27 -9.71 16 18 C 0.50 7.38 7.90 -10.98 -0.09 7.29 16 19 O -0.51 -10.63 16.07 5.56 0.09 -10.54 16 20 C 0.11 1.07 7.08 -5.19 -0.04 1.03 16 21 N -0.12 -1.69 3.48 -11.72 -0.04 -1.73 16 22 N -0.30 -4.08 12.13 29.34 0.36 -3.72 16 23 C 0.14 1.73 13.26 -91.58 -1.21 0.51 16 24 N -0.29 -4.37 12.50 29.33 0.37 -4.00 16 25 N -0.04 -0.70 13.25 60.35 0.80 0.10 16 26 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.06 0.78 8.06 -51.93 -0.42 0.36 16 29 H 0.03 0.55 7.76 -51.93 -0.40 0.15 16 30 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.25 7.42 8.31 -40.82 -0.34 7.08 16 32 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.11 3.19 5.87 -51.93 -0.31 2.89 16 34 H 0.40 3.64 8.57 -40.82 -0.35 3.29 16 35 H 0.15 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.14 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.23 1.63 8.06 -52.49 -0.42 1.21 16 LS Contribution 317.41 15.07 4.78 4.78 Total: -1.00 -37.21 317.41 -5.49 -42.70 By element: Atomic # 1 Polarization: 5.34 SS G_CDS: -4.78 Total: 0.56 kcal Atomic # 6 Polarization: 8.57 SS G_CDS: -1.76 Total: 6.82 kcal Atomic # 7 Polarization: -62.77 SS G_CDS: 1.20 Total: -61.57 kcal Atomic # 8 Polarization: -10.63 SS G_CDS: 0.09 Total: -10.54 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.25 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -37.21 -5.49 -42.70 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001079702533.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 172.181 kcal (2) G-P(sol) polarization free energy of solvation -37.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 134.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.705 kcal (6) G-S(sol) free energy of system = (1) + (5) 129.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds