Wall clock time and date at job start Tue Mar 31 2020 02:53:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46497 * 119.99707 * 2 1 4 4 C 1.53010 * 109.47020 * 264.43586 * 3 2 1 5 5 H 1.08996 * 112.95863 * 291.58274 * 4 3 2 6 6 C 1.53942 * 113.76909 * 63.26165 * 4 3 2 7 7 C 1.53941 * 86.29127 * 137.91041 * 6 4 3 8 8 N 1.47583 * 113.76795 * 159.90461 * 4 3 2 9 9 C 1.36933 * 134.49357 * 41.06590 * 8 4 3 10 10 H 1.08002 * 120.00296 * 4.83756 * 9 8 4 11 11 C 1.38814 * 119.99979 * 184.83436 * 9 8 4 12 12 N 1.31620 * 120.00040 * 0.02562 * 11 9 8 13 13 Si 1.86797 * 119.99906 * 180.02562 * 11 9 8 14 14 H 1.48500 * 109.47302 * 90.00304 * 13 11 9 15 15 H 1.48510 * 109.46707 * 210.00049 * 13 11 9 16 16 H 1.48501 * 109.47391 * 329.99814 * 13 11 9 17 17 C 1.34773 * 120.00020 * 180.02562 * 2 1 3 18 18 O 1.21536 * 119.99674 * 185.11241 * 17 2 1 19 19 C 1.48005 * 120.00029 * 5.11453 * 17 2 1 20 20 N 1.34187 * 126.69789 * 353.13460 * 19 17 2 21 21 N 1.28988 * 107.25163 * 180.02562 * 20 19 17 22 22 N 1.28721 * 108.98594 * 359.97438 * 21 20 19 23 23 C 1.46501 * 125.31864 * 179.97438 * 22 21 20 24 24 N 1.28874 * 109.36200 * 0.24738 * 22 21 20 25 25 H 1.09007 * 109.47389 * 264.08979 * 1 2 3 26 26 H 1.08998 * 109.47720 * 24.08820 * 1 2 3 27 27 H 1.09003 * 109.47312 * 144.09373 * 1 2 3 28 28 H 1.08997 * 109.47367 * 24.43171 * 3 2 1 29 29 H 1.08993 * 109.47299 * 144.43852 * 3 2 1 30 30 H 1.09004 * 113.73668 * 252.25253 * 6 4 3 31 31 H 1.08997 * 113.74552 * 23.45328 * 6 4 3 32 32 H 1.09004 * 113.77433 * 90.69120 * 7 6 4 33 33 H 1.08996 * 113.76958 * 221.98384 * 7 6 4 34 34 H 0.96994 * 120.00472 * 179.97438 * 12 11 9 35 35 H 1.09005 * 109.46818 * 90.02792 * 23 22 21 36 36 H 1.09001 * 109.47106 * 330.03138 * 23 22 21 37 37 H 1.08996 * 109.47334 * 210.02541 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.5735 1.6405 -1.4358 5 1 3.3188 0.9720 -1.8667 6 6 1.3605 1.8895 -2.3503 7 6 2.1492 3.0911 -2.9016 8 7 2.8821 3.0721 -1.6182 9 6 3.5700 4.0059 -0.8901 10 1 4.0944 3.7120 0.0071 11 6 3.5934 5.3303 -1.3054 12 7 2.9539 5.6886 -2.3986 13 14 4.5323 6.6039 -0.3126 14 1 5.9306 6.6839 -0.8063 15 1 3.8780 7.9287 -0.4621 16 1 4.5347 6.2118 1.1197 17 6 2.1389 -1.1672 -0.0005 18 8 3.3506 -1.1692 0.0933 19 6 1.4033 -2.4463 -0.1154 20 7 0.0715 -2.6100 -0.0969 21 7 -0.1605 -3.8726 -0.2229 22 7 0.9611 -4.4969 -0.3189 23 6 1.1133 -5.9457 -0.4744 24 7 1.9292 -3.6491 -0.2511 25 1 -0.3634 -0.1058 1.0222 26 1 -0.3634 0.9381 -0.4194 27 1 -0.3634 -0.8324 -0.6027 28 1 1.5688 2.0512 0.4250 29 1 3.1030 1.1655 0.5976 30 1 1.1942 1.1001 -3.0834 31 1 0.4544 2.1669 -1.8117 32 1 2.7708 2.8504 -3.7641 33 1 1.5420 3.9839 -3.0509 34 1 2.9699 6.6140 -2.6886 35 1 1.1235 -6.1982 -1.5347 36 1 0.2799 -6.4528 0.0119 37 1 2.0496 -6.2639 -0.0161 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085770254.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:53:12 Heat of formation + Delta-G solvation = 151.167196 kcal Electronic energy + Delta-G solvation = -21902.550961 eV Core-core repulsion = 18527.502739 eV Total energy + Delta-G solvation = -3375.048222 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.139 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -45.54339 -41.14769 -39.49973 -36.84109 -36.09494 -34.35326 -34.18385 -30.78457 -29.83980 -29.26286 -27.81931 -26.03016 -25.29059 -24.34692 -23.65244 -21.38258 -20.81054 -19.04339 -18.74104 -18.53029 -17.80169 -17.46434 -17.04393 -16.55132 -15.97039 -15.54605 -15.32183 -15.08032 -14.32154 -14.25875 -14.08279 -14.04458 -13.86042 -13.55587 -13.30310 -13.03413 -12.87885 -12.52824 -12.49577 -12.27753 -12.24030 -11.92915 -11.80170 -11.57368 -11.48159 -11.45352 -11.29485 -10.81196 -9.78736 -8.88819 -7.86350 -5.21324 -0.16676 0.26542 0.81416 1.47100 1.48937 1.57092 1.61059 1.86981 2.48440 2.69981 3.02226 3.32618 3.45262 3.78801 3.90969 4.06501 4.17681 4.25626 4.27177 4.37410 4.47802 4.54420 4.62215 4.69518 4.83022 4.92876 4.98316 4.99836 5.03952 5.16072 5.24528 5.39899 5.59213 5.71778 5.97621 6.11600 6.72722 6.95286 7.04431 7.63825 8.59516 9.29457 Molecular weight = 280.14amu Principal moments of inertia in cm(-1) A = 0.039713 B = 0.003665 C = 0.003564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 704.887470 B = 7637.324922 C = 7855.476998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.576 5.576 3 C 0.135 3.865 4 C 0.128 3.872 5 H 0.031 0.969 6 C -0.124 4.124 7 C 0.147 3.853 8 N -0.626 5.626 9 C -0.231 4.231 10 H 0.080 0.920 11 C -0.064 4.064 12 N -0.951 5.951 13 Si 0.975 3.025 14 H -0.292 1.292 15 H -0.292 1.292 16 H -0.267 1.267 17 C 0.606 3.394 18 O -0.552 6.552 19 C 0.123 3.877 20 N -0.256 5.256 21 N -0.061 5.061 22 N -0.114 5.114 23 C 0.073 3.927 24 N -0.266 5.266 25 H 0.074 0.926 26 H 0.089 0.911 27 H 0.100 0.900 28 H 0.099 0.901 29 H 0.061 0.939 30 H 0.075 0.925 31 H 0.095 0.905 32 H 0.010 0.990 33 H 0.053 0.947 34 H 0.248 0.752 35 H 0.129 0.871 36 H 0.145 0.855 37 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.924 -23.725 4.161 26.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.307 5.307 3 C 0.011 3.989 4 C 0.021 3.979 5 H 0.048 0.952 6 C -0.162 4.162 7 C 0.022 3.978 8 N -0.353 5.353 9 C -0.360 4.360 10 H 0.098 0.902 11 C -0.257 4.257 12 N -0.600 5.600 13 Si 0.804 3.196 14 H -0.219 1.219 15 H -0.218 1.218 16 H -0.191 1.191 17 C 0.388 3.612 18 O -0.427 6.427 19 C -0.160 4.160 20 N -0.130 5.130 21 N -0.054 5.054 22 N -0.030 5.030 23 C -0.064 4.064 24 N -0.122 5.122 25 H 0.093 0.907 26 H 0.108 0.892 27 H 0.118 0.882 28 H 0.118 0.882 29 H 0.079 0.921 30 H 0.093 0.907 31 H 0.113 0.887 32 H 0.028 0.972 33 H 0.072 0.928 34 H 0.057 0.943 35 H 0.148 0.852 36 H 0.163 0.837 37 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -9.673 -23.847 4.276 26.087 hybrid contribution 1.390 1.221 0.110 1.853 sum -8.284 -22.626 4.385 24.491 Atomic orbital electron populations 1.22508 0.75786 1.05257 1.04011 1.47572 1.09142 1.03972 1.70022 1.21572 0.96943 0.83204 0.97181 1.22606 0.94695 0.85878 0.94721 0.95168 1.23530 0.96889 0.97438 0.98375 1.22291 0.91752 0.96269 0.87491 1.46422 1.62947 1.04642 1.21249 1.19380 1.24051 0.87872 1.04676 0.90226 1.25571 1.02185 0.98771 0.99145 1.70000 1.47805 1.16631 1.25563 0.85126 0.77520 0.78357 0.78623 1.21896 1.21816 1.19138 1.16467 0.85365 0.81487 0.77858 1.90832 1.14237 1.86573 1.51016 1.24909 0.89413 0.94118 1.07536 1.76220 1.12552 1.07003 1.17254 1.78859 1.11343 0.99868 1.15369 1.50791 0.99899 1.12576 1.39705 1.23264 1.09021 0.65926 1.08189 1.75076 1.18857 0.99390 1.18862 0.90719 0.89194 0.88189 0.88232 0.92056 0.90660 0.88706 0.97228 0.92816 0.94292 0.85248 0.83682 0.85259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.52 9.36 127.77 1.20 2.71 16 2 N -0.58 -17.76 2.75 -850.01 -2.34 -20.10 16 3 C 0.13 4.94 5.29 86.38 0.46 5.40 16 4 C 0.13 5.43 4.55 45.09 0.21 5.64 16 5 H 0.03 1.41 8.14 -2.39 -0.02 1.39 16 6 C -0.12 -4.62 7.28 31.25 0.23 -4.39 16 7 C 0.15 7.16 7.65 86.43 0.66 7.82 16 8 N -0.63 -32.74 3.58 -690.86 -2.48 -35.22 16 9 C -0.23 -13.19 10.51 84.03 0.88 -12.31 16 10 H 0.08 4.39 7.83 -2.91 -0.02 4.37 16 11 C -0.06 -3.68 5.50 84.86 0.47 -3.21 16 12 N -0.95 -57.87 11.32 21.65 0.25 -57.62 16 13 Si 0.98 46.53 29.55 68.60 2.03 48.56 16 14 H -0.29 -13.90 7.11 99.48 0.71 -13.19 16 15 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 16 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 17 C 0.61 20.66 7.64 86.83 0.66 21.32 16 18 O -0.55 -23.00 16.74 -3.83 -0.06 -23.06 16 19 C 0.12 3.56 7.81 137.15 1.07 4.63 16 20 N -0.26 -6.35 9.07 -52.36 -0.47 -6.83 16 21 N -0.06 -1.26 13.23 37.02 0.49 -0.77 16 22 N -0.11 -1.99 4.39 -206.58 -0.91 -2.89 16 23 C 0.07 0.23 11.62 127.77 1.49 1.71 16 24 N -0.27 -6.88 12.17 -52.32 -0.64 -7.52 16 25 H 0.07 1.51 8.14 -2.38 -0.02 1.49 16 26 H 0.09 1.90 6.56 -2.39 -0.02 1.89 16 27 H 0.10 2.24 5.24 -2.39 -0.01 2.23 16 28 H 0.10 3.54 8.03 -2.39 -0.02 3.52 16 29 H 0.06 2.48 7.53 -2.39 -0.02 2.46 16 30 H 0.07 2.41 8.14 -2.38 -0.02 2.39 16 31 H 0.09 3.16 6.78 -2.39 -0.02 3.15 16 32 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 33 H 0.05 2.87 6.97 -2.39 -0.02 2.86 16 34 H 0.25 14.66 8.31 -92.71 -0.77 13.88 16 35 H 0.13 -0.10 8.14 -2.38 -0.02 -0.12 16 36 H 0.15 -0.36 8.14 -2.39 -0.02 -0.37 16 37 H 0.13 0.08 8.14 -2.39 -0.02 0.06 16 Total: -1.00 -78.36 315.58 4.28 -74.08 By element: Atomic # 1 Polarization: 0.95 SS G_CDS: 1.09 Total: 2.04 kcal Atomic # 6 Polarization: 22.01 SS G_CDS: 7.32 Total: 29.33 kcal Atomic # 7 Polarization: -124.85 SS G_CDS: -6.10 Total: -130.95 kcal Atomic # 8 Polarization: -23.00 SS G_CDS: -0.06 Total: -23.06 kcal Atomic # 14 Polarization: 46.53 SS G_CDS: 2.03 Total: 48.56 kcal Total: -78.36 4.28 -74.08 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085770254.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 225.248 kcal (2) G-P(sol) polarization free energy of solvation -78.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 146.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.080 kcal (6) G-S(sol) free energy of system = (1) + (5) 151.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds