Wall clock time and date at job start Tue Mar 31 2020 02:53:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46499 * 120.00015 * 2 1 4 4 C 1.53000 * 109.46967 * 276.05948 * 3 2 1 5 5 H 1.09003 * 112.97062 * 67.79788 * 4 3 2 6 6 C 1.53947 * 113.76532 * 296.12172 * 4 3 2 7 7 C 1.53950 * 86.29033 * 222.09014 * 6 4 3 8 8 N 1.47578 * 86.23659 * 23.55281 * 7 6 4 9 9 C 1.36941 * 134.49262 * 155.42865 * 8 7 6 10 10 H 1.08004 * 119.99999 * 185.79675 * 9 8 7 11 11 C 1.38816 * 120.00145 * 5.79204 * 9 8 7 12 12 N 1.31618 * 119.99420 * 0.02562 * 11 9 8 13 13 Si 1.86795 * 120.00009 * 179.97438 * 11 9 8 14 14 H 1.48499 * 109.47232 * 0.02562 * 13 11 9 15 15 H 1.48504 * 109.46796 * 120.00200 * 13 11 9 16 16 H 1.48494 * 109.47322 * 239.99918 * 13 11 9 17 17 C 1.34771 * 119.99880 * 179.97438 * 2 1 3 18 18 O 1.21537 * 119.99993 * 184.93204 * 17 2 1 19 19 C 1.48003 * 120.00300 * 4.93838 * 17 2 1 20 20 N 1.34196 * 126.69600 * 3.49197 * 19 17 2 21 21 N 1.28983 * 107.25179 * 179.89730 * 20 19 17 22 22 N 1.28729 * 108.98690 * 0.37524 * 21 20 19 23 23 C 1.46502 * 125.31870 * 179.80058 * 22 21 20 24 24 N 1.28869 * 109.36015 * 359.76121 * 22 21 20 25 25 H 1.08998 * 109.47135 * 95.64110 * 1 2 3 26 26 H 1.09004 * 109.46843 * 215.64754 * 1 2 3 27 27 H 1.09002 * 109.47067 * 335.64280 * 1 2 3 28 28 H 1.08993 * 109.47410 * 156.05392 * 3 2 1 29 29 H 1.08996 * 109.46949 * 36.05115 * 3 2 1 30 30 H 1.08998 * 113.74401 * 107.75173 * 6 4 3 31 31 H 1.09005 * 113.84046 * 336.45057 * 6 4 3 32 32 H 1.09002 * 113.76523 * 137.90357 * 7 6 4 33 33 H 1.08994 * 113.77399 * 269.19068 * 7 6 4 34 34 H 0.96999 * 119.99551 * 179.97438 * 12 11 9 35 35 H 1.09000 * 109.46520 * 269.95283 * 23 22 21 36 36 H 1.08994 * 109.46989 * 29.94971 * 23 22 21 37 37 H 1.08990 * 109.46963 * 149.95852 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3207 1.7865 -1.4345 5 1 1.3644 2.0895 -1.8609 6 6 3.1487 0.8719 -2.3552 7 6 3.7798 2.1641 -2.9047 8 7 3.3977 2.7816 -1.6200 9 6 3.8574 3.8473 -0.8931 10 1 3.4543 4.0450 0.0892 11 6 4.8414 4.6733 -1.4187 12 7 5.3322 4.4325 -2.6160 13 14 5.4678 6.1274 -0.4274 14 1 4.7594 6.1795 0.8766 15 1 6.9262 5.9745 -0.1922 16 1 5.2166 7.3835 -1.1784 17 6 2.1389 -1.1672 0.0005 18 8 3.3509 -1.1691 0.0910 19 6 1.4030 -2.4466 -0.1092 20 7 0.0808 -2.5991 -0.2805 21 7 -0.1551 -3.8663 -0.3283 22 7 0.9540 -4.5044 -0.1872 23 6 1.0975 -5.9623 -0.1822 24 7 1.9183 -3.6603 -0.0520 25 1 -0.3633 -0.1010 -1.0227 26 1 -0.3633 -0.8351 0.5990 27 1 -0.3633 0.9362 0.4238 28 1 3.1925 1.1138 0.4171 29 1 1.6597 1.9988 0.6048 30 1 2.5510 0.3296 -3.0879 31 1 3.8523 0.2316 -1.8231 32 1 4.8571 2.0967 -3.0565 33 1 3.2542 2.5785 -3.7649 34 1 6.0196 5.0099 -2.9834 35 1 0.9988 -6.3335 0.8378 36 1 0.3223 -6.4059 -0.8069 37 1 2.0783 -6.2321 -0.5737 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085770255.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:53:18 Heat of formation + Delta-G solvation = 149.065597 kcal Electronic energy + Delta-G solvation = -21993.866555 eV Core-core repulsion = 18618.727201 eV Total energy + Delta-G solvation = -3375.139354 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.139 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -45.52747 -41.15139 -39.41536 -36.83935 -36.09268 -34.34546 -34.18081 -30.75000 -29.83293 -29.23576 -27.80054 -26.08337 -25.26174 -24.34403 -23.64842 -21.37807 -20.75748 -18.99640 -18.71554 -18.57658 -17.70384 -17.54744 -17.05460 -16.57517 -15.83307 -15.55055 -15.30735 -15.06513 -14.32078 -14.24255 -14.16675 -14.00923 -13.83388 -13.41770 -13.30415 -12.96488 -12.91050 -12.59025 -12.51325 -12.24645 -12.20708 -12.07152 -11.82748 -11.60679 -11.47774 -11.38070 -11.23318 -10.84411 -9.78081 -8.87649 -7.87053 -5.19974 -0.15232 0.28368 0.82754 1.47001 1.48963 1.58592 1.64137 1.89599 2.49367 2.71844 3.03477 3.34178 3.44378 3.82459 3.92330 4.07876 4.19429 4.25646 4.31949 4.37499 4.47138 4.50874 4.62472 4.70054 4.83041 4.84180 4.98832 5.00506 5.07517 5.10546 5.22809 5.42273 5.55413 5.70734 5.95322 6.13459 6.77590 6.94385 7.05968 7.64460 8.60672 9.31497 Molecular weight = 280.14amu Principal moments of inertia in cm(-1) A = 0.038469 B = 0.003747 C = 0.003683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 727.683965 B = 7470.766485 C = 7600.417776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.579 5.579 3 C 0.129 3.871 4 C 0.135 3.865 5 H 0.067 0.933 6 C -0.139 4.139 7 C 0.162 3.838 8 N -0.627 5.627 9 C -0.226 4.226 10 H 0.091 0.909 11 C -0.073 4.073 12 N -0.958 5.958 13 Si 0.978 3.022 14 H -0.260 1.260 15 H -0.297 1.297 16 H -0.293 1.293 17 C 0.607 3.393 18 O -0.545 6.545 19 C 0.122 3.878 20 N -0.255 5.255 21 N -0.062 5.062 22 N -0.116 5.116 23 C 0.073 3.927 24 N -0.267 5.267 25 H 0.070 0.930 26 H 0.089 0.911 27 H 0.096 0.904 28 H 0.066 0.934 29 H 0.099 0.901 30 H 0.071 0.929 31 H 0.066 0.934 32 H 0.030 0.970 33 H 0.022 0.978 34 H 0.246 0.754 35 H 0.131 0.869 36 H 0.144 0.856 37 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.563 -21.254 5.837 26.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.311 5.311 3 C 0.005 3.995 4 C 0.028 3.972 5 H 0.084 0.916 6 C -0.177 4.177 7 C 0.036 3.964 8 N -0.354 5.354 9 C -0.354 4.354 10 H 0.109 0.891 11 C -0.266 4.266 12 N -0.607 5.607 13 Si 0.807 3.193 14 H -0.184 1.184 15 H -0.224 1.224 16 H -0.220 1.220 17 C 0.389 3.611 18 O -0.419 6.419 19 C -0.161 4.161 20 N -0.130 5.130 21 N -0.055 5.055 22 N -0.031 5.031 23 C -0.064 4.064 24 N -0.122 5.122 25 H 0.088 0.912 26 H 0.107 0.893 27 H 0.115 0.885 28 H 0.085 0.915 29 H 0.117 0.883 30 H 0.089 0.911 31 H 0.085 0.915 32 H 0.048 0.952 33 H 0.040 0.960 34 H 0.055 0.945 35 H 0.149 0.851 36 H 0.162 0.838 37 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -14.247 -21.408 5.909 26.386 hybrid contribution 1.133 1.270 0.028 1.702 sum -13.114 -20.139 5.937 24.755 Atomic orbital electron populations 1.22299 0.75761 1.04737 1.03799 1.47529 1.09077 1.04044 1.70482 1.21643 0.97393 0.82984 0.97455 1.22728 0.92482 0.87747 0.94237 0.91559 1.23551 0.99114 0.96163 0.98893 1.21998 0.97435 0.88612 0.88330 1.46334 1.35139 1.32654 1.21255 1.19503 1.16024 1.01892 0.97965 0.89089 1.25682 1.00772 1.02175 0.97925 1.70049 1.31741 1.40821 1.18119 0.85004 0.77373 0.78720 0.78232 1.18393 1.22433 1.22024 1.16416 0.85398 0.81475 0.77767 1.90854 1.14160 1.86417 1.50482 1.24956 0.89752 0.93958 1.07431 1.76270 1.12511 1.07310 1.16901 1.78849 1.11591 0.99405 1.15675 1.50792 1.00571 1.12292 1.39431 1.23250 1.08934 0.65398 1.08788 1.75081 1.18705 0.99522 1.18912 0.91177 0.89306 0.88502 0.91522 0.88331 0.91056 0.91497 0.95199 0.96012 0.94486 0.85116 0.83768 0.85401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.63 9.38 127.77 1.20 2.82 16 2 N -0.58 -17.43 2.77 -850.02 -2.36 -19.79 16 3 C 0.13 4.58 5.49 86.38 0.47 5.05 16 4 C 0.13 5.50 4.59 45.05 0.21 5.71 16 5 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 6 C -0.14 -5.88 7.27 31.25 0.23 -5.65 16 7 C 0.16 8.34 7.37 86.48 0.64 8.98 16 8 N -0.63 -33.14 3.58 -690.98 -2.48 -35.61 16 9 C -0.23 -12.80 10.52 84.03 0.88 -11.92 16 10 H 0.09 4.81 7.83 -2.91 -0.02 4.79 16 11 C -0.07 -4.29 5.50 84.86 0.47 -3.83 16 12 N -0.96 -60.25 11.54 21.65 0.25 -60.00 16 13 Si 0.98 46.94 29.55 68.60 2.03 48.97 16 14 H -0.26 -11.49 7.11 99.48 0.71 -10.79 16 15 H -0.30 -14.42 7.11 99.48 0.71 -13.71 16 16 H -0.29 -14.01 7.11 99.48 0.71 -13.31 16 17 C 0.61 20.70 7.19 86.83 0.62 21.32 16 18 O -0.54 -22.97 15.35 -3.83 -0.06 -23.02 16 19 C 0.12 3.55 7.77 137.15 1.07 4.62 16 20 N -0.26 -6.36 9.27 -52.36 -0.49 -6.85 16 21 N -0.06 -1.29 13.23 37.02 0.49 -0.80 16 22 N -0.12 -2.05 4.39 -206.60 -0.91 -2.96 16 23 C 0.07 0.26 11.62 127.77 1.49 1.74 16 24 N -0.27 -7.00 12.17 -52.31 -0.64 -7.64 16 25 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 26 H 0.09 1.83 5.85 -2.38 -0.01 1.82 16 27 H 0.10 1.67 7.90 -2.39 -0.02 1.65 16 28 H 0.07 2.84 7.19 -2.39 -0.02 2.82 16 29 H 0.10 3.06 7.96 -2.39 -0.02 3.04 16 30 H 0.07 2.61 8.14 -2.39 -0.02 2.59 16 31 H 0.07 3.08 6.83 -2.38 -0.02 3.06 16 32 H 0.03 1.73 7.43 -2.39 -0.02 1.71 16 33 H 0.02 1.14 8.14 -2.39 -0.02 1.12 16 34 H 0.25 15.03 8.31 -92.71 -0.77 14.26 16 35 H 0.13 -0.11 8.14 -2.39 -0.02 -0.13 16 36 H 0.14 -0.27 8.14 -2.39 -0.02 -0.29 16 37 H 0.13 0.18 8.14 -2.39 -0.02 0.17 16 Total: -1.00 -80.35 316.18 4.20 -76.15 By element: Atomic # 1 Polarization: 1.62 SS G_CDS: 1.09 Total: 2.71 kcal Atomic # 6 Polarization: 21.58 SS G_CDS: 7.27 Total: 28.85 kcal Atomic # 7 Polarization: -127.53 SS G_CDS: -6.12 Total: -133.65 kcal Atomic # 8 Polarization: -22.97 SS G_CDS: -0.06 Total: -23.02 kcal Atomic # 14 Polarization: 46.94 SS G_CDS: 2.03 Total: 48.97 kcal Total: -80.35 4.20 -76.15 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085770255.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 225.214 kcal (2) G-P(sol) polarization free energy of solvation -80.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 144.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.148 kcal (6) G-S(sol) free energy of system = (1) + (5) 149.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds